Wall clock time and date at job start Wed Apr 1 2020 05:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33468 * 125.49444 * 2 1 4 4 C 1.30340 * 109.72391 * 179.97438 * 3 2 1 5 5 N 1.34671 * 108.04464 * 0.06116 * 4 3 2 6 6 N 1.30973 * 125.50100 * 180.02562 * 2 1 3 7 7 C 1.46295 * 125.04742 * 179.88401 * 5 4 3 8 8 C 1.53306 * 108.77402 * 342.98906 * 7 5 4 9 9 H 1.09000 * 109.47138 * 290.13599 * 8 7 5 10 10 C 1.50698 * 109.47291 * 170.13550 * 8 7 5 11 11 O 1.21275 * 120.00442 * 239.99588 * 10 8 7 12 12 N 1.34777 * 119.99782 * 59.99328 * 10 8 7 13 13 C 1.46494 * 120.00174 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.47379 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.69943 * 299.31691 * 14 13 12 16 16 C 1.52757 * 109.51169 * 179.19922 * 14 13 12 17 17 C 1.53040 * 109.38565 * 185.70835 * 16 14 13 18 18 C 1.53042 * 109.53887 * 61.23447 * 17 16 14 19 19 C 1.53191 * 109.31422 * 298.64192 * 18 17 16 20 20 N 1.46924 * 108.77923 * 54.62964 * 19 18 17 21 21 C 1.36939 * 120.62878 * 126.36800 * 20 19 18 22 22 H 1.08001 * 119.99994 * 211.22611 * 21 20 19 23 23 C 1.38809 * 119.99848 * 31.23000 * 21 20 19 24 24 N 1.31618 * 120.00271 * 20.98141 * 23 21 20 25 25 Si 1.86800 * 119.99801 * 200.98555 * 23 21 20 26 26 H 1.48495 * 109.47271 * 269.99856 * 25 23 21 27 27 H 1.48504 * 109.47171 * 149.99449 * 25 23 21 28 28 H 1.48503 * 109.47302 * 29.99702 * 25 23 21 29 29 C 1.53167 * 109.48073 * 50.13347 * 8 7 5 30 30 C 1.50928 * 127.90135 * 180.10883 * 4 3 2 31 31 H 1.09007 * 109.47395 * 269.99490 * 1 2 3 32 32 H 1.08997 * 109.47641 * 29.99988 * 1 2 3 33 33 H 1.09003 * 109.47157 * 149.99948 * 1 2 3 34 34 H 1.08999 * 109.59172 * 223.19978 * 7 5 4 35 35 H 1.09000 * 109.70685 * 102.84441 * 7 5 4 36 36 H 0.97004 * 119.99710 * 0.02562 * 12 10 8 37 37 H 1.09001 * 109.47263 * 60.00582 * 13 12 10 38 38 H 1.09003 * 109.47361 * 300.00232 * 13 12 10 39 39 H 1.09001 * 109.56821 * 65.66829 * 16 14 13 40 40 H 1.09004 * 109.38292 * 305.63007 * 16 14 13 41 41 H 1.09004 * 109.45470 * 301.21716 * 17 16 14 42 42 H 1.08998 * 109.46287 * 181.25922 * 17 16 14 43 43 H 1.08999 * 109.49853 * 178.68769 * 18 17 16 44 44 H 1.09003 * 109.49488 * 58.58706 * 18 17 16 45 45 H 1.09007 * 109.58596 * 294.84286 * 19 18 17 46 46 H 1.08999 * 109.58959 * 174.42635 * 19 18 17 47 47 H 0.96999 * 120.00027 * 4.98919 * 24 23 21 48 48 H 1.08997 * 109.50396 * 50.75273 * 29 8 7 49 49 H 1.09005 * 109.50437 * 170.88760 * 29 8 7 50 50 H 1.09000 * 109.71723 * 283.69865 * 30 4 3 51 51 H 1.08994 * 109.71682 * 44.30028 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2819 1.0867 0.0000 4 6 3.5362 0.7324 0.0005 5 7 3.5897 -0.6132 -0.0004 6 7 2.2675 -1.0663 -0.0005 7 6 4.8198 -1.4052 -0.0027 8 6 5.9854 -0.5049 -0.4283 9 1 5.8848 -0.2554 -1.4846 10 6 7.2875 -1.2299 -0.2052 11 8 8.1196 -0.7652 0.5448 12 7 7.5274 -2.3948 -0.8391 13 6 8.7934 -3.0994 -0.6227 14 6 8.8111 -4.3835 -1.4544 15 1 7.9911 -5.0321 -1.1463 16 6 10.1391 -5.1088 -1.2448 17 6 10.2127 -6.3152 -2.1836 18 6 10.1448 -5.8382 -3.6362 19 6 8.8114 -5.1222 -3.8726 20 7 8.6673 -4.0503 -2.8781 21 6 8.4097 -2.7640 -3.2710 22 1 8.7823 -1.9359 -2.6864 23 6 7.6696 -2.5246 -4.4207 24 7 6.8790 -3.4607 -4.9013 25 14 7.7958 -0.8738 -5.2858 26 1 6.7751 0.0533 -4.7345 27 1 7.5627 -1.0583 -6.7408 28 1 9.1500 -0.3040 -5.0699 29 6 5.9679 0.7809 0.4038 30 6 4.7522 1.6265 0.0030 31 1 -0.3634 -0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 4.7209 -2.2319 -0.7061 35 1 5.0067 -1.7966 0.9973 36 1 6.8620 -2.7663 -1.4393 37 1 8.8945 -3.3488 0.4335 38 1 9.6220 -2.4592 -0.9258 39 1 10.2110 -5.4473 -0.2111 40 1 10.9617 -4.4276 -1.4626 41 1 9.3761 -6.9841 -1.9815 42 1 11.1501 -6.8466 -2.0193 43 1 10.2207 -6.6958 -4.3047 44 1 10.9670 -5.1498 -3.8318 45 1 7.9913 -5.8323 -3.7657 46 1 8.7988 -4.6946 -4.8751 47 1 6.7576 -4.2904 -4.4138 48 1 5.9029 0.5286 1.4622 49 1 6.8814 1.3464 0.2191 50 1 4.9054 2.0417 -0.9931 51 1 4.6128 2.4348 0.7208 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024571405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:08 Heat of formation + Delta-G solvation = 56.999277 kcal Electronic energy + Delta-G solvation = -32081.568358 eV Core-core repulsion = 28017.486004 eV Total energy + Delta-G solvation = -4064.082355 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.35282 -39.80322 -38.16773 -36.53749 -34.43817 -33.47097 -33.23609 -32.10904 -31.01303 -29.83605 -29.60170 -28.43631 -26.09917 -24.89567 -24.34681 -23.04357 -22.15545 -21.09817 -20.74414 -20.19613 -19.37804 -19.13820 -17.56637 -16.86846 -16.55608 -16.04460 -15.70721 -15.45681 -15.10426 -14.43208 -14.31827 -14.27954 -13.92444 -13.82772 -13.77199 -13.60470 -13.36394 -13.19818 -12.93931 -12.64351 -12.55474 -12.36706 -12.26883 -11.94455 -11.74275 -11.63345 -11.50811 -11.31160 -11.16887 -10.97022 -10.83603 -10.50632 -10.32992 -10.19111 -10.09789 -10.02894 -9.84045 -9.68847 -9.57651 -9.27915 -9.23527 -8.66365 -8.38865 -6.99883 -6.17084 -3.43122 1.61538 2.18938 2.85986 2.90881 3.34460 3.42521 3.52397 3.56300 3.86957 4.19167 4.41135 4.48405 4.57699 4.69030 4.84666 4.97629 5.05324 5.17455 5.23182 5.25972 5.29661 5.32147 5.43218 5.44232 5.50619 5.52922 5.56892 5.67081 5.75660 5.80098 5.85193 5.87396 5.95241 6.01458 6.10874 6.17492 6.21140 6.34663 6.40039 6.45144 6.46104 6.51473 6.61186 6.74525 6.76714 6.93512 7.01293 7.11163 7.91354 7.99655 8.13535 8.43128 8.59256 8.93734 9.67663 10.14152 11.07595 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.003335 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.399804 B = 8393.585958 C = 8938.403886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.212 3.788 3 N -0.541 5.541 4 C 0.281 3.719 5 N -0.371 5.371 6 N -0.314 5.314 7 C 0.141 3.859 8 C -0.126 4.126 9 H 0.115 0.885 10 C 0.520 3.480 11 O -0.553 6.553 12 N -0.687 5.687 13 C 0.136 3.864 14 C 0.162 3.838 15 H 0.030 0.970 16 C -0.128 4.128 17 C -0.108 4.108 18 C -0.139 4.139 19 C 0.152 3.848 20 N -0.596 5.596 21 C -0.348 4.348 22 H 0.062 0.938 23 C -0.018 4.018 24 N -0.915 5.915 25 Si 1.057 2.943 26 H -0.294 1.294 27 H -0.285 1.285 28 H -0.292 1.292 29 C -0.105 4.105 30 C -0.043 4.043 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.414 0.586 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.017 0.983 46 H 0.077 0.923 47 H 0.271 0.729 48 H 0.077 0.923 49 H 0.100 0.900 50 H 0.103 0.897 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 2.982 9.325 10.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.070 4.070 3 N -0.270 5.270 4 C 0.004 3.996 5 N -0.161 5.161 6 N -0.142 5.142 7 C 0.018 3.982 8 C -0.148 4.148 9 H 0.133 0.867 10 C 0.303 3.697 11 O -0.432 6.432 12 N -0.337 5.337 13 C 0.012 3.988 14 C 0.055 3.945 15 H 0.047 0.953 16 C -0.168 4.168 17 C -0.145 4.145 18 C -0.178 4.178 19 C 0.026 3.974 20 N -0.321 5.321 21 C -0.477 4.477 22 H 0.079 0.921 23 C -0.222 4.222 24 N -0.555 5.555 25 Si 0.887 3.113 26 H -0.222 1.222 27 H -0.211 1.211 28 H -0.218 1.218 29 C -0.143 4.143 30 C -0.082 4.082 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.252 0.748 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.035 0.965 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.118 0.882 50 H 0.121 0.879 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.784 3.681 8.500 10.005 hybrid contribution 0.563 -1.209 0.827 1.569 sum -3.221 2.472 9.327 10.172 Atomic orbital electron populations 1.20048 0.84003 1.03943 1.03435 1.24394 0.98196 0.85630 0.98743 1.70166 0.99836 1.30826 1.26163 1.24338 0.95012 0.84045 0.96172 1.50100 1.05567 1.05879 1.54557 1.77938 0.86548 1.22566 1.27192 1.21744 0.78403 0.93927 1.04124 1.21742 0.92623 0.96465 1.04003 0.86731 1.19808 0.87653 0.81543 0.80657 1.90666 1.47565 1.66721 1.38253 1.46056 1.20245 1.22092 1.45284 1.21286 0.86462 0.93513 0.97499 1.20625 0.94697 0.92818 0.86336 0.95287 1.21863 0.99263 0.97621 0.98017 1.21359 1.00209 0.96970 0.95990 1.22075 1.01057 0.99336 0.95330 1.20964 0.91985 0.89589 0.94872 1.44143 1.83615 1.05956 0.98424 1.19994 1.31696 0.83160 1.12881 0.92064 1.25774 0.93773 1.04646 0.97960 1.70773 1.32970 1.08860 1.42854 0.83630 0.75632 0.74969 0.77042 1.22171 1.21106 1.21798 1.21552 0.98438 0.94236 1.00110 1.20472 0.86779 0.95965 1.05001 0.90104 0.89683 0.90085 0.87798 0.88993 0.74811 0.92522 0.91373 0.92847 0.91976 0.92862 0.93374 0.93290 0.92463 0.96501 0.90453 0.91766 0.90395 0.88191 0.87913 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.56 10.51 36.00 0.38 -0.18 16 2 C 0.21 3.15 8.15 -156.44 -1.27 1.88 16 3 N -0.54 -8.36 11.18 -8.03 -0.09 -8.45 16 4 C 0.28 4.04 7.72 -155.78 -1.20 2.83 16 5 N -0.37 -5.61 4.04 -58.29 -0.24 -5.85 16 6 N -0.31 -5.12 12.74 32.50 0.41 -4.70 16 7 C 0.14 1.89 6.43 -3.99 -0.03 1.86 16 8 C -0.13 -1.71 2.54 -91.53 -0.23 -1.94 16 9 H 0.11 1.64 8.12 -51.93 -0.42 1.22 16 10 C 0.52 8.46 7.14 -10.99 -0.08 8.38 16 11 O -0.55 -10.31 15.83 5.56 0.09 -10.22 16 12 N -0.69 -11.74 3.72 -60.30 -0.22 -11.96 16 13 C 0.14 2.37 4.42 -4.04 -0.02 2.35 16 14 C 0.16 2.90 3.00 -67.82 -0.20 2.70 16 15 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 16 C -0.13 -2.01 5.34 -26.84 -0.14 -2.16 16 17 C -0.11 -1.65 5.89 -26.69 -0.16 -1.81 16 18 C -0.14 -2.42 6.08 -26.61 -0.16 -2.58 16 19 C 0.15 3.19 4.64 -3.71 -0.02 3.17 16 20 N -0.60 -12.73 2.82 -165.03 -0.46 -13.20 16 21 C -0.35 -8.22 6.86 -15.06 -0.10 -8.32 16 22 H 0.06 1.50 5.89 -52.49 -0.31 1.19 16 23 C -0.02 -0.46 4.77 -17.43 -0.08 -0.54 16 24 N -0.91 -24.63 12.50 55.49 0.69 -23.93 16 25 Si 1.06 23.56 29.97 -169.99 -5.09 18.47 16 26 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 29 C -0.11 -1.22 4.68 -26.43 -0.12 -1.34 16 30 C -0.04 -0.46 6.33 -27.55 -0.17 -0.63 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.44 7.88 -51.93 -0.41 1.03 16 35 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 36 H 0.41 7.50 6.99 -40.82 -0.29 7.21 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.32 7.45 -51.93 -0.39 0.94 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.37 7.78 -51.92 -0.40 -0.04 16 46 H 0.08 1.86 6.44 -51.93 -0.33 1.53 16 47 H 0.27 7.30 6.45 -40.82 -0.26 7.04 16 48 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 49 H 0.10 1.15 7.80 -51.93 -0.41 0.75 16 50 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -30.20 395.52 -10.93 -41.12 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -8.35 Total: 9.09 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -3.62 Total: 3.68 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: 0.09 Total: -68.10 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.09 Total: 18.47 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.20 -10.93 -41.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024571405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.122 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds