Wall clock time and date at job start Wed Apr 1 2020 05:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33468 * 125.49444 * 2 1 4 4 C 1.30340 * 109.72391 * 179.97438 * 3 2 1 5 5 N 1.34671 * 108.04464 * 0.06116 * 4 3 2 6 6 N 1.30973 * 125.50100 * 180.02562 * 2 1 3 7 7 C 1.46295 * 125.04742 * 179.88401 * 5 4 3 8 8 C 1.53306 * 108.77402 * 342.98906 * 7 5 4 9 9 H 1.09000 * 109.47138 * 290.13599 * 8 7 5 10 10 C 1.50698 * 109.47291 * 170.13550 * 8 7 5 11 11 O 1.21275 * 120.00442 * 239.99588 * 10 8 7 12 12 N 1.34777 * 119.99782 * 59.99328 * 10 8 7 13 13 C 1.46494 * 120.00174 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.47379 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.69943 * 299.31691 * 14 13 12 16 16 C 1.52757 * 109.51169 * 179.19922 * 14 13 12 17 17 C 1.53040 * 109.38565 * 185.70835 * 16 14 13 18 18 C 1.53042 * 109.53887 * 61.23447 * 17 16 14 19 19 C 1.53191 * 109.31422 * 298.64192 * 18 17 16 20 20 N 1.46924 * 108.77923 * 54.62964 * 19 18 17 21 21 C 1.36939 * 120.62878 * 126.36800 * 20 19 18 22 22 H 1.08001 * 119.99994 * 211.22611 * 21 20 19 23 23 C 1.38809 * 119.99848 * 31.23000 * 21 20 19 24 24 N 1.31618 * 120.00271 * 20.98141 * 23 21 20 25 25 Si 1.86800 * 119.99801 * 200.98555 * 23 21 20 26 26 H 1.48495 * 109.47271 * 269.99856 * 25 23 21 27 27 H 1.48504 * 109.47171 * 149.99449 * 25 23 21 28 28 H 1.48503 * 109.47302 * 29.99702 * 25 23 21 29 29 C 1.53167 * 109.48073 * 50.13347 * 8 7 5 30 30 C 1.50928 * 127.90135 * 180.10883 * 4 3 2 31 31 H 1.09007 * 109.47395 * 269.99490 * 1 2 3 32 32 H 1.08997 * 109.47641 * 29.99988 * 1 2 3 33 33 H 1.09003 * 109.47157 * 149.99948 * 1 2 3 34 34 H 1.08999 * 109.59172 * 223.19978 * 7 5 4 35 35 H 1.09000 * 109.70685 * 102.84441 * 7 5 4 36 36 H 0.97004 * 119.99710 * 0.02562 * 12 10 8 37 37 H 1.09001 * 109.47263 * 60.00582 * 13 12 10 38 38 H 1.09003 * 109.47361 * 300.00232 * 13 12 10 39 39 H 1.09001 * 109.56821 * 65.66829 * 16 14 13 40 40 H 1.09004 * 109.38292 * 305.63007 * 16 14 13 41 41 H 1.09004 * 109.45470 * 301.21716 * 17 16 14 42 42 H 1.08998 * 109.46287 * 181.25922 * 17 16 14 43 43 H 1.08999 * 109.49853 * 178.68769 * 18 17 16 44 44 H 1.09003 * 109.49488 * 58.58706 * 18 17 16 45 45 H 1.09007 * 109.58596 * 294.84286 * 19 18 17 46 46 H 1.08999 * 109.58959 * 174.42635 * 19 18 17 47 47 H 0.96999 * 120.00027 * 4.98919 * 24 23 21 48 48 H 1.08997 * 109.50396 * 50.75273 * 29 8 7 49 49 H 1.09005 * 109.50437 * 170.88760 * 29 8 7 50 50 H 1.09000 * 109.71723 * 283.69865 * 30 4 3 51 51 H 1.08994 * 109.71682 * 44.30028 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2819 1.0867 0.0000 4 6 3.5362 0.7324 0.0005 5 7 3.5897 -0.6132 -0.0004 6 7 2.2675 -1.0663 -0.0005 7 6 4.8198 -1.4052 -0.0027 8 6 5.9854 -0.5049 -0.4283 9 1 5.8848 -0.2554 -1.4846 10 6 7.2875 -1.2299 -0.2052 11 8 8.1196 -0.7652 0.5448 12 7 7.5274 -2.3948 -0.8391 13 6 8.7934 -3.0994 -0.6227 14 6 8.8111 -4.3835 -1.4544 15 1 7.9911 -5.0321 -1.1463 16 6 10.1391 -5.1088 -1.2448 17 6 10.2127 -6.3152 -2.1836 18 6 10.1448 -5.8382 -3.6362 19 6 8.8114 -5.1222 -3.8726 20 7 8.6673 -4.0503 -2.8781 21 6 8.4097 -2.7640 -3.2710 22 1 8.7823 -1.9359 -2.6864 23 6 7.6696 -2.5246 -4.4207 24 7 6.8790 -3.4607 -4.9013 25 14 7.7958 -0.8738 -5.2858 26 1 6.7751 0.0533 -4.7345 27 1 7.5627 -1.0583 -6.7408 28 1 9.1500 -0.3040 -5.0699 29 6 5.9679 0.7809 0.4038 30 6 4.7522 1.6265 0.0030 31 1 -0.3634 -0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 4.7209 -2.2319 -0.7061 35 1 5.0067 -1.7966 0.9973 36 1 6.8620 -2.7663 -1.4393 37 1 8.8945 -3.3488 0.4335 38 1 9.6220 -2.4592 -0.9258 39 1 10.2110 -5.4473 -0.2111 40 1 10.9617 -4.4276 -1.4626 41 1 9.3761 -6.9841 -1.9815 42 1 11.1501 -6.8466 -2.0193 43 1 10.2207 -6.6958 -4.3047 44 1 10.9670 -5.1498 -3.8318 45 1 7.9913 -5.8323 -3.7657 46 1 8.7988 -4.6946 -4.8751 47 1 6.7576 -4.2904 -4.4138 48 1 5.9029 0.5286 1.4622 49 1 6.8814 1.3464 0.2191 50 1 4.9054 2.0417 -0.9931 51 1 4.6128 2.4348 0.7208 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024571405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:07 Heat of formation + Delta-G solvation = 40.393400 kcal Electronic energy + Delta-G solvation = -32082.288443 eV Core-core repulsion = 28017.486004 eV Total energy + Delta-G solvation = -4064.802440 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.44914 -41.14721 -39.64689 -37.68639 -35.84439 -35.19156 -34.29957 -33.19309 -32.37032 -31.51672 -30.71716 -29.43366 -27.62331 -26.47722 -25.40751 -24.21505 -23.72464 -22.50823 -21.89301 -21.43253 -20.75544 -20.41664 -19.16980 -18.16158 -17.79780 -17.19196 -17.16548 -16.82238 -16.26297 -15.97194 -15.55729 -15.45001 -15.27462 -15.15988 -15.05293 -15.00030 -14.84527 -14.22597 -14.06018 -13.95817 -13.73770 -13.55429 -13.35349 -13.25895 -13.09870 -12.84828 -12.78400 -12.69348 -12.53831 -12.26784 -12.01367 -12.00345 -11.97597 -11.73754 -11.64840 -11.30890 -11.18714 -11.06614 -10.82788 -10.78745 -10.46632 -10.36359 -9.90604 -8.81917 -8.09705 -5.34440 0.51505 1.09034 1.53280 1.59156 1.62026 1.76394 1.77814 2.24178 2.61664 2.89677 3.10723 3.27771 3.44745 3.46093 3.50374 3.69673 3.80047 3.90248 4.01156 4.08667 4.15885 4.16875 4.21317 4.31110 4.35571 4.44015 4.48960 4.54876 4.66788 4.70592 4.71846 4.74379 4.86175 4.89366 4.91912 4.92859 5.01403 5.06558 5.09069 5.15147 5.26204 5.27315 5.29461 5.34783 5.45113 5.52356 5.61697 5.71801 6.00394 6.47553 6.61118 7.02704 7.10361 7.20928 7.83032 8.30535 9.12079 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011920 B = 0.003335 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.399804 B = 8393.585958 C = 8938.403886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.205 3.795 3 N -0.560 5.560 4 C 0.276 3.724 5 N -0.381 5.381 6 N -0.349 5.349 7 C 0.146 3.854 8 C -0.117 4.117 9 H 0.107 0.893 10 C 0.523 3.477 11 O -0.573 6.573 12 N -0.691 5.691 13 C 0.141 3.859 14 C 0.160 3.840 15 H 0.031 0.969 16 C -0.123 4.123 17 C -0.103 4.103 18 C -0.131 4.131 19 C 0.156 3.844 20 N -0.609 5.609 21 C -0.324 4.324 22 H 0.055 0.945 23 C -0.062 4.062 24 N -0.947 5.947 25 Si 1.090 2.910 26 H -0.282 1.282 27 H -0.298 1.298 28 H -0.284 1.284 29 C -0.097 4.097 30 C -0.036 4.036 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.409 0.591 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.047 0.953 45 H 0.006 0.994 46 H 0.040 0.960 47 H 0.259 0.741 48 H 0.080 0.920 49 H 0.104 0.896 50 H 0.115 0.885 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 3.386 10.925 11.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.076 4.076 3 N -0.290 5.290 4 C 0.000 4.000 5 N -0.172 5.172 6 N -0.178 5.178 7 C 0.023 3.977 8 C -0.139 4.139 9 H 0.125 0.875 10 C 0.309 3.691 11 O -0.454 6.454 12 N -0.340 5.340 13 C 0.017 3.983 14 C 0.054 3.946 15 H 0.049 0.951 16 C -0.162 4.162 17 C -0.141 4.141 18 C -0.170 4.170 19 C 0.030 3.970 20 N -0.335 5.335 21 C -0.454 4.454 22 H 0.073 0.927 23 C -0.260 4.260 24 N -0.590 5.590 25 Si 0.918 3.082 26 H -0.208 1.208 27 H -0.225 1.225 28 H -0.210 1.210 29 C -0.135 4.135 30 C -0.075 4.075 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.245 0.755 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.024 0.976 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.099 0.901 49 H 0.123 0.877 50 H 0.133 0.867 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.271 4.081 10.129 11.400 hybrid contribution 0.434 -1.359 0.378 1.476 sum -2.837 2.722 10.507 11.219 Atomic orbital electron populations 1.20243 0.81221 1.04912 1.04908 1.25248 0.99921 0.85135 0.97320 1.70211 1.00378 1.31229 1.27134 1.25033 0.95840 0.84156 0.94963 1.50167 1.05524 1.06377 1.55104 1.77887 0.87234 1.23825 1.28890 1.21687 0.78061 0.93516 1.04398 1.21659 0.91086 0.97153 1.04018 0.87461 1.20145 0.88215 0.80983 0.79806 1.90653 1.48533 1.67080 1.39108 1.46102 1.20016 1.22571 1.45344 1.21242 0.85826 0.92793 0.98426 1.20796 0.96196 0.93410 0.84166 0.95099 1.21821 0.97071 0.97350 0.99985 1.21349 1.01918 0.96924 0.93860 1.21961 0.98017 0.99304 0.97703 1.20807 0.93823 0.89329 0.92999 1.44328 1.83648 1.05347 1.00184 1.20002 1.29401 0.84105 1.11865 0.92715 1.26544 0.94101 1.06087 0.99283 1.70854 1.35336 1.09220 1.43583 0.83158 0.76186 0.73263 0.75600 1.20821 1.22515 1.21019 1.21521 0.99048 0.93173 0.99784 1.20629 0.84720 0.95705 1.06456 0.88267 0.88453 0.89315 0.88752 0.88019 0.75466 0.90531 0.93513 0.89801 0.92855 0.92356 0.90553 0.91568 0.93444 0.97558 0.94181 0.92997 0.90109 0.87725 0.86713 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.01 10.51 71.23 0.75 -0.26 16 2 C 0.21 5.94 8.15 138.48 1.13 7.07 16 3 N -0.56 -16.68 11.18 -179.31 -2.01 -18.69 16 4 C 0.28 7.62 7.72 138.37 1.07 8.68 16 5 N -0.38 -11.39 4.04 -338.34 -1.37 -12.76 16 6 N -0.35 -11.35 12.74 -51.08 -0.65 -12.00 16 7 C 0.15 3.88 6.43 86.52 0.56 4.44 16 8 C -0.12 -3.09 2.54 -11.38 -0.03 -3.12 16 9 H 0.11 3.04 8.12 -2.39 -0.02 3.02 16 10 C 0.52 16.70 7.14 87.66 0.63 17.32 16 11 O -0.57 -20.74 15.83 -3.01 -0.05 -20.79 16 12 N -0.69 -23.44 3.72 -463.07 -1.72 -25.17 16 13 C 0.14 4.77 4.42 86.38 0.38 5.15 16 14 C 0.16 5.56 3.00 44.83 0.13 5.70 16 15 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 16 C -0.12 -3.55 5.34 30.53 0.16 -3.39 16 17 C -0.10 -2.86 5.89 30.62 0.18 -2.68 16 18 C -0.13 -4.40 6.08 30.67 0.19 -4.22 16 19 C 0.16 6.67 4.64 86.36 0.40 7.07 16 20 N -0.61 -26.15 2.82 -676.03 -1.90 -28.06 16 21 C -0.32 -15.44 6.86 84.03 0.58 -14.86 16 22 H 0.06 2.68 5.89 -2.91 -0.02 2.67 16 23 C -0.06 -3.18 4.77 84.86 0.41 -2.78 16 24 N -0.95 -52.63 12.50 21.65 0.27 -52.36 16 25 Si 1.09 48.18 29.97 68.60 2.06 50.24 16 26 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 27 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 28 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 29 C -0.10 -2.08 4.68 30.79 0.14 -1.93 16 30 C -0.04 -0.70 6.33 30.06 0.19 -0.51 16 31 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 2.67 7.88 -2.39 -0.02 2.65 16 35 H 0.10 2.47 8.11 -2.39 -0.02 2.45 16 36 H 0.41 14.97 6.99 -92.71 -0.65 14.32 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.05 1.79 7.45 -2.39 -0.02 1.77 16 39 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.01 0.28 7.78 -2.38 -0.02 0.27 16 46 H 0.04 2.00 6.44 -2.39 -0.02 1.98 16 47 H 0.26 14.55 6.45 -92.71 -0.60 13.95 16 48 H 0.08 1.71 8.12 -2.39 -0.02 1.69 16 49 H 0.10 2.20 7.80 -2.38 -0.02 2.18 16 50 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 51 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -66.10 395.52 1.95 -64.15 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: 0.46 Total: 33.76 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 6.86 Total: 21.67 kcal Atomic # 7 Polarization: -141.65 SS G_CDS: -7.38 Total: -149.03 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.05 Total: -20.79 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.06 Total: 50.24 kcal Total: -66.10 1.95 -64.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024571405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.543 kcal (2) G-P(sol) polarization free energy of solvation -66.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds