Wall clock time and date at job start Wed Apr 1 2020 05:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33474 * 125.49862 * 2 1 4 4 C 1.30337 * 109.72609 * 180.02562 * 3 2 1 5 5 N 1.34679 * 108.04410 * 359.94819 * 4 3 2 6 6 N 1.30974 * 125.49855 * 180.02562 * 2 1 3 7 7 C 1.46290 * 125.04633 * 180.32188 * 5 4 3 8 8 C 1.53202 * 108.83030 * 16.70615 * 7 5 4 9 9 H 1.08993 * 109.33199 * 70.08782 * 8 7 5 10 10 C 1.50702 * 109.50336 * 190.01854 * 8 7 5 11 11 O 1.21283 * 119.99737 * 120.16179 * 10 8 7 12 12 N 1.34777 * 120.00229 * 300.15652 * 10 8 7 13 13 C 1.46495 * 120.00042 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47118 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.58061 * 60.09716 * 14 13 12 16 16 C 1.53192 * 109.58710 * 180.51956 * 14 13 12 17 17 C 1.53040 * 109.31172 * 174.42535 * 16 14 13 18 18 C 1.53046 * 109.53800 * 298.63831 * 17 16 14 19 19 C 1.53190 * 109.31281 * 61.36293 * 18 17 16 20 20 N 1.46919 * 108.77913 * 305.36769 * 19 18 17 21 21 C 1.36937 * 120.62979 * 233.63452 * 20 19 18 22 22 H 1.08001 * 120.00266 * 148.64189 * 21 20 19 23 23 C 1.38806 * 119.99843 * 328.63547 * 21 20 19 24 24 N 1.31615 * 120.00485 * 346.95827 * 23 21 20 25 25 Si 1.86806 * 120.00064 * 166.95851 * 23 21 20 26 26 H 1.48506 * 109.46943 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47069 * 119.99996 * 25 23 21 28 28 H 1.48496 * 109.47131 * 240.00377 * 25 23 21 29 29 C 1.53152 * 109.58547 * 310.10403 * 8 7 5 30 30 C 1.50919 * 127.90191 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.47211 * 270.00288 * 1 2 3 32 32 H 1.09000 * 109.47081 * 30.00103 * 1 2 3 33 33 H 1.09002 * 109.47164 * 149.99961 * 1 2 3 34 34 H 1.09000 * 109.59031 * 136.53609 * 7 5 4 35 35 H 1.09004 * 109.59169 * 256.96679 * 7 5 4 36 36 H 0.97006 * 119.99764 * 0.02562 * 12 10 8 37 37 H 1.09000 * 109.47883 * 300.00324 * 13 12 10 38 38 H 1.09007 * 109.47075 * 60.00482 * 13 12 10 39 39 H 1.08999 * 109.50005 * 294.37430 * 16 14 13 40 40 H 1.08999 * 109.49686 * 54.47447 * 16 14 13 41 41 H 1.08998 * 109.46069 * 178.61664 * 17 16 14 42 42 H 1.09006 * 109.46160 * 58.65605 * 17 16 14 43 43 H 1.09004 * 109.49242 * 301.41178 * 18 17 16 44 44 H 1.09000 * 109.49820 * 181.31563 * 18 17 16 45 45 H 1.08996 * 109.58585 * 185.57466 * 19 18 17 46 46 H 1.09000 * 109.58376 * 65.15275 * 19 18 17 47 47 H 0.97001 * 120.00608 * 180.02562 * 24 23 21 48 48 H 1.09002 * 109.51030 * 309.14164 * 29 8 7 49 49 H 1.09000 * 109.54592 * 189.03081 * 29 8 7 50 50 H 1.09002 * 109.71795 * 315.62195 * 30 4 3 51 51 H 1.09003 * 109.72000 * 76.22757 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5363 0.7324 -0.0005 5 7 3.5897 -0.6134 0.0002 6 7 2.2675 -1.0663 -0.0005 7 6 4.8197 -1.4053 0.0067 8 6 5.9852 -0.5051 0.4290 9 1 5.8843 -0.2559 1.4853 10 6 7.2874 -1.2302 0.2062 11 8 8.1198 -0.7652 -0.5433 12 7 7.5269 -2.3953 0.8399 13 6 8.7926 -3.1005 0.6228 14 6 8.8100 -4.3847 1.4543 15 1 7.9826 -5.0268 1.1521 16 6 10.1378 -5.1178 1.2393 17 6 10.2068 -6.3255 2.1768 18 6 10.1476 -5.8494 3.6301 19 6 8.8199 -5.1246 3.8721 20 7 8.6793 -4.0509 2.8792 21 6 8.4318 -2.7633 3.2742 22 1 8.8096 -1.9371 2.6902 23 6 7.6953 -2.5200 4.4254 24 7 7.0211 -3.4968 4.9942 25 14 7.6610 -0.8059 5.1674 26 1 8.4944 0.1067 4.3440 27 1 6.2626 -0.3072 5.1967 28 1 8.1984 -0.8546 6.5508 29 6 5.9682 0.7808 -0.4027 30 6 4.7522 1.6264 -0.0013 31 1 -0.3633 0.0001 1.0276 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 4.7200 -2.2295 0.7129 35 1 5.0067 -1.7983 -0.9927 36 1 6.8610 -2.7674 1.4391 37 1 8.8932 -3.3497 -0.4335 38 1 9.6215 -2.4607 0.9258 39 1 10.2035 -5.4558 0.2052 40 1 10.9655 -4.4421 1.4550 41 1 11.1400 -6.8630 2.0085 42 1 9.3649 -6.9886 1.9773 43 1 10.9752 -5.1668 3.8232 44 1 10.2203 -6.7081 4.2975 45 1 8.8140 -4.6979 4.8751 46 1 7.9947 -5.8291 3.7677 47 1 6.5062 -3.3267 5.7984 48 1 5.9036 0.5288 -1.4612 49 1 6.8815 1.3465 -0.2184 50 1 4.6137 2.4350 -0.7190 51 1 4.9043 2.0412 0.9952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024571406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:13 Heat of formation + Delta-G solvation = 58.417204 kcal Electronic energy + Delta-G solvation = -32040.781612 eV Core-core repulsion = 27976.760743 eV Total energy + Delta-G solvation = -4064.020869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.35747 -39.77669 -37.98189 -36.52235 -34.37676 -33.25883 -33.15012 -32.10504 -30.93048 -30.02013 -29.58360 -28.43393 -26.11020 -24.92796 -24.34435 -23.02959 -22.22001 -20.94932 -20.69334 -20.18978 -19.36167 -19.10278 -17.27010 -16.73043 -16.36991 -16.00656 -15.71905 -15.47046 -15.12034 -14.43699 -14.28859 -14.16652 -14.12038 -13.86850 -13.70214 -13.48794 -13.19223 -13.04833 -12.82020 -12.64539 -12.53308 -12.38897 -12.12675 -11.99370 -11.77342 -11.66959 -11.33936 -11.23879 -11.05039 -10.97040 -10.87451 -10.63856 -10.36933 -10.22452 -10.07641 -10.03962 -9.70102 -9.69122 -9.55370 -9.37427 -9.27924 -8.71677 -8.39175 -6.75892 -5.94560 -3.42100 1.60979 2.18824 2.85427 2.91831 3.21712 3.33351 3.34118 3.53803 3.86289 4.19334 4.31972 4.48161 4.57883 4.68932 4.84302 5.05336 5.13137 5.17302 5.22055 5.26608 5.30920 5.41677 5.44743 5.50118 5.54868 5.57673 5.61630 5.66078 5.79495 5.86030 5.88816 5.95716 6.01149 6.05758 6.20114 6.29472 6.32739 6.34226 6.45501 6.52008 6.63240 6.66581 6.76221 6.77948 6.87375 6.99639 7.30660 7.57616 7.67918 8.02120 8.12939 8.30314 8.60689 9.05553 9.67223 10.25754 11.11879 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011959 B = 0.003341 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.707020 B = 8377.636063 C = 8930.770800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.212 3.788 3 N -0.542 5.542 4 C 0.280 3.720 5 N -0.371 5.371 6 N -0.313 5.313 7 C 0.140 3.860 8 C -0.126 4.126 9 H 0.113 0.887 10 C 0.520 3.480 11 O -0.552 6.552 12 N -0.689 5.689 13 C 0.134 3.866 14 C 0.160 3.840 15 H 0.032 0.968 16 C -0.127 4.127 17 C -0.108 4.108 18 C -0.144 4.144 19 C 0.173 3.827 20 N -0.589 5.589 21 C -0.253 4.253 22 H 0.070 0.930 23 C 0.009 3.991 24 N -0.897 5.897 25 Si 0.888 3.112 26 H -0.276 1.276 27 H -0.289 1.289 28 H -0.287 1.287 29 C -0.105 4.105 30 C -0.043 4.043 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.416 0.584 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.085 0.915 46 H 0.018 0.982 47 H 0.254 0.746 48 H 0.078 0.922 49 H 0.099 0.901 50 H 0.106 0.894 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 2.944 -9.162 10.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.070 4.070 3 N -0.270 5.270 4 C 0.004 3.996 5 N -0.161 5.161 6 N -0.142 5.142 7 C 0.017 3.983 8 C -0.149 4.149 9 H 0.131 0.869 10 C 0.303 3.697 11 O -0.431 6.431 12 N -0.339 5.339 13 C 0.010 3.990 14 C 0.053 3.947 15 H 0.050 0.950 16 C -0.167 4.167 17 C -0.145 4.145 18 C -0.184 4.184 19 C 0.048 3.952 20 N -0.313 5.313 21 C -0.383 4.383 22 H 0.088 0.912 23 C -0.190 4.190 24 N -0.541 5.541 25 Si 0.717 3.283 26 H -0.201 1.201 27 H -0.216 1.216 28 H -0.214 1.214 29 C -0.144 4.144 30 C -0.082 4.082 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.254 0.746 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.036 0.964 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.118 0.882 50 H 0.125 0.875 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.902 2.769 -9.534 10.667 hybrid contribution -0.066 0.518 1.075 1.195 sum -3.968 3.287 -8.459 9.904 Atomic orbital electron populations 1.20047 0.84010 1.03755 1.03618 1.24398 0.98196 0.85636 0.98775 1.70165 0.99847 1.30844 1.26170 1.24333 0.95000 0.84071 0.96227 1.50117 1.05597 1.05871 1.54516 1.77942 0.86542 1.22533 1.27159 1.21750 0.78326 0.93917 1.04273 1.21720 0.92755 0.96516 1.03882 0.86928 1.19795 0.87604 0.81578 0.80692 1.90670 1.47497 1.66731 1.38229 1.46083 1.20399 1.22008 1.45419 1.21338 0.86291 0.93655 0.97746 1.20738 0.94740 0.92670 0.86566 0.95041 1.21936 0.99220 0.97638 0.97892 1.21364 1.00003 0.96901 0.96259 1.22197 1.01819 0.99327 0.95017 1.20764 0.90545 0.88867 0.95046 1.44074 1.83304 1.05629 0.98273 1.19230 1.26910 0.83544 1.08630 0.91196 1.25088 0.96932 0.96802 1.00215 1.69993 1.31664 1.30928 1.21474 0.86446 0.77444 0.84712 0.79666 1.20059 1.21622 1.21353 1.21556 0.98399 0.94226 1.00178 1.20477 0.86821 0.95996 1.04939 0.89972 0.89758 0.90146 0.87613 0.88902 0.74632 0.92452 0.91365 0.93018 0.92056 0.93686 0.92876 0.92832 0.93521 0.89709 0.96360 0.93548 0.90314 0.88204 0.87532 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.55 10.51 36.00 0.38 -0.17 16 2 C 0.21 3.13 8.15 -156.43 -1.27 1.85 16 3 N -0.54 -8.33 11.18 -8.03 -0.09 -8.42 16 4 C 0.28 4.00 7.72 -155.77 -1.20 2.80 16 5 N -0.37 -5.56 4.04 -58.35 -0.24 -5.80 16 6 N -0.31 -5.07 12.74 32.50 0.41 -4.65 16 7 C 0.14 1.85 6.42 -4.05 -0.03 1.83 16 8 C -0.13 -1.69 2.54 -91.59 -0.23 -1.93 16 9 H 0.11 1.58 8.12 -51.93 -0.42 1.16 16 10 C 0.52 8.36 7.14 -10.98 -0.08 8.28 16 11 O -0.55 -10.20 15.83 5.55 0.09 -10.11 16 12 N -0.69 -11.61 3.75 -60.29 -0.23 -11.83 16 13 C 0.13 2.29 4.43 -4.04 -0.02 2.27 16 14 C 0.16 2.87 3.01 -67.60 -0.20 2.66 16 15 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 16 C -0.13 -2.01 5.37 -26.61 -0.14 -2.15 16 17 C -0.11 -1.68 5.88 -26.69 -0.16 -1.84 16 18 C -0.14 -2.57 6.08 -26.61 -0.16 -2.73 16 19 C 0.17 3.75 5.26 -3.72 -0.02 3.73 16 20 N -0.59 -12.68 2.97 -164.78 -0.49 -13.17 16 21 C -0.25 -5.94 6.96 -15.06 -0.10 -6.05 16 22 H 0.07 1.68 5.87 -52.49 -0.31 1.37 16 23 C 0.01 0.23 4.99 -17.43 -0.09 0.14 16 24 N -0.90 -23.48 11.19 55.49 0.62 -22.86 16 25 Si 0.89 20.10 29.57 -169.99 -5.03 15.07 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 C -0.11 -1.21 4.68 -26.42 -0.12 -1.33 16 30 C -0.04 -0.46 6.33 -27.54 -0.17 -0.63 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.11 1.43 7.87 -51.93 -0.41 1.02 16 35 H 0.09 1.13 8.11 -51.93 -0.42 0.71 16 36 H 0.42 7.40 7.04 -40.82 -0.29 7.12 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.30 7.42 -51.92 -0.39 0.91 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 2.09 6.18 -51.93 -0.32 1.77 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 48 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 49 H 0.10 1.15 7.80 -51.93 -0.41 0.74 16 50 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 396.92 15.07 5.98 5.98 Total: -1.00 -29.82 396.92 -11.03 -40.85 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -8.43 Total: 8.22 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -3.63 Total: 6.72 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -0.01 Total: -66.73 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.82 -11.03 -40.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024571406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.266 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds