Wall clock time and date at job start Wed Apr 1 2020 05:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33474 * 125.49862 * 2 1 4 4 C 1.30337 * 109.72609 * 180.02562 * 3 2 1 5 5 N 1.34679 * 108.04410 * 359.94819 * 4 3 2 6 6 N 1.30974 * 125.49855 * 180.02562 * 2 1 3 7 7 C 1.46290 * 125.04633 * 180.32188 * 5 4 3 8 8 C 1.53202 * 108.83030 * 16.70615 * 7 5 4 9 9 H 1.08993 * 109.33199 * 70.08782 * 8 7 5 10 10 C 1.50702 * 109.50336 * 190.01854 * 8 7 5 11 11 O 1.21283 * 119.99737 * 120.16179 * 10 8 7 12 12 N 1.34777 * 120.00229 * 300.15652 * 10 8 7 13 13 C 1.46495 * 120.00042 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47118 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.58061 * 60.09716 * 14 13 12 16 16 C 1.53192 * 109.58710 * 180.51956 * 14 13 12 17 17 C 1.53040 * 109.31172 * 174.42535 * 16 14 13 18 18 C 1.53046 * 109.53800 * 298.63831 * 17 16 14 19 19 C 1.53190 * 109.31281 * 61.36293 * 18 17 16 20 20 N 1.46919 * 108.77913 * 305.36769 * 19 18 17 21 21 C 1.36937 * 120.62979 * 233.63452 * 20 19 18 22 22 H 1.08001 * 120.00266 * 148.64189 * 21 20 19 23 23 C 1.38806 * 119.99843 * 328.63547 * 21 20 19 24 24 N 1.31615 * 120.00485 * 346.95827 * 23 21 20 25 25 Si 1.86806 * 120.00064 * 166.95851 * 23 21 20 26 26 H 1.48506 * 109.46943 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47069 * 119.99996 * 25 23 21 28 28 H 1.48496 * 109.47131 * 240.00377 * 25 23 21 29 29 C 1.53152 * 109.58547 * 310.10403 * 8 7 5 30 30 C 1.50919 * 127.90191 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.47211 * 270.00288 * 1 2 3 32 32 H 1.09000 * 109.47081 * 30.00103 * 1 2 3 33 33 H 1.09002 * 109.47164 * 149.99961 * 1 2 3 34 34 H 1.09000 * 109.59031 * 136.53609 * 7 5 4 35 35 H 1.09004 * 109.59169 * 256.96679 * 7 5 4 36 36 H 0.97006 * 119.99764 * 0.02562 * 12 10 8 37 37 H 1.09000 * 109.47883 * 300.00324 * 13 12 10 38 38 H 1.09007 * 109.47075 * 60.00482 * 13 12 10 39 39 H 1.08999 * 109.50005 * 294.37430 * 16 14 13 40 40 H 1.08999 * 109.49686 * 54.47447 * 16 14 13 41 41 H 1.08998 * 109.46069 * 178.61664 * 17 16 14 42 42 H 1.09006 * 109.46160 * 58.65605 * 17 16 14 43 43 H 1.09004 * 109.49242 * 301.41178 * 18 17 16 44 44 H 1.09000 * 109.49820 * 181.31563 * 18 17 16 45 45 H 1.08996 * 109.58585 * 185.57466 * 19 18 17 46 46 H 1.09000 * 109.58376 * 65.15275 * 19 18 17 47 47 H 0.97001 * 120.00608 * 180.02562 * 24 23 21 48 48 H 1.09002 * 109.51030 * 309.14164 * 29 8 7 49 49 H 1.09000 * 109.54592 * 189.03081 * 29 8 7 50 50 H 1.09002 * 109.71795 * 315.62195 * 30 4 3 51 51 H 1.09003 * 109.72000 * 76.22757 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5363 0.7324 -0.0005 5 7 3.5897 -0.6134 0.0002 6 7 2.2675 -1.0663 -0.0005 7 6 4.8197 -1.4053 0.0067 8 6 5.9852 -0.5051 0.4290 9 1 5.8843 -0.2559 1.4853 10 6 7.2874 -1.2302 0.2062 11 8 8.1198 -0.7652 -0.5433 12 7 7.5269 -2.3953 0.8399 13 6 8.7926 -3.1005 0.6228 14 6 8.8100 -4.3847 1.4543 15 1 7.9826 -5.0268 1.1521 16 6 10.1378 -5.1178 1.2393 17 6 10.2068 -6.3255 2.1768 18 6 10.1476 -5.8494 3.6301 19 6 8.8199 -5.1246 3.8721 20 7 8.6793 -4.0509 2.8792 21 6 8.4318 -2.7633 3.2742 22 1 8.8096 -1.9371 2.6902 23 6 7.6953 -2.5200 4.4254 24 7 7.0211 -3.4968 4.9942 25 14 7.6610 -0.8059 5.1674 26 1 8.4944 0.1067 4.3440 27 1 6.2626 -0.3072 5.1967 28 1 8.1984 -0.8546 6.5508 29 6 5.9682 0.7808 -0.4027 30 6 4.7522 1.6264 -0.0013 31 1 -0.3633 0.0001 1.0276 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 4.7200 -2.2295 0.7129 35 1 5.0067 -1.7983 -0.9927 36 1 6.8610 -2.7674 1.4391 37 1 8.8932 -3.3497 -0.4335 38 1 9.6215 -2.4607 0.9258 39 1 10.2035 -5.4558 0.2052 40 1 10.9655 -4.4421 1.4550 41 1 11.1400 -6.8630 2.0085 42 1 9.3649 -6.9886 1.9773 43 1 10.9752 -5.1668 3.8232 44 1 10.2203 -6.7081 4.2975 45 1 8.8140 -4.6979 4.8751 46 1 7.9947 -5.8291 3.7677 47 1 6.5062 -3.3267 5.7984 48 1 5.9036 0.5288 -1.4612 49 1 6.8815 1.3465 -0.2184 50 1 4.6137 2.4350 -0.7190 51 1 4.9043 2.0412 0.9952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024571406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:11 Heat of formation + Delta-G solvation = 42.080970 kcal Electronic energy + Delta-G solvation = -32041.490004 eV Core-core repulsion = 27976.760743 eV Total energy + Delta-G solvation = -4064.729261 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.44439 -41.09582 -39.45647 -37.66368 -35.76888 -34.90335 -34.29157 -33.17029 -32.31450 -31.68583 -30.69707 -29.42226 -27.65560 -26.48286 -25.39172 -24.20278 -23.77258 -22.31778 -21.87504 -21.41189 -20.72397 -20.36438 -18.68297 -18.02503 -17.72663 -17.29797 -17.16040 -16.79082 -16.31436 -15.94347 -15.69117 -15.40106 -15.25737 -15.07970 -14.94099 -14.81623 -14.57441 -14.21235 -14.07095 -13.96427 -13.65326 -13.53251 -13.36717 -13.33005 -12.89063 -12.86175 -12.77741 -12.66561 -12.57173 -12.33410 -12.23931 -12.02825 -11.99174 -11.79916 -11.53394 -11.21413 -11.13735 -11.09417 -10.82051 -10.78292 -10.53653 -10.35851 -9.86398 -8.56251 -7.83694 -5.31179 0.51774 1.10358 1.37274 1.46119 1.50702 1.63124 1.77762 2.27600 2.47570 2.89842 3.12417 3.31951 3.46544 3.48549 3.60131 3.70711 3.81064 3.99496 4.04561 4.17871 4.21114 4.22841 4.28350 4.36112 4.44383 4.49061 4.56150 4.67042 4.71454 4.71853 4.78714 4.86068 4.87981 4.92195 4.93148 5.00713 5.07293 5.14668 5.22696 5.27132 5.28321 5.37737 5.45278 5.46969 5.59359 5.64098 5.72226 5.74743 5.83947 6.43637 6.64247 7.02954 7.18292 7.25008 7.88343 8.42169 9.20611 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011959 B = 0.003341 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.707020 B = 8377.636063 C = 8930.770800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.205 3.795 3 N -0.561 5.561 4 C 0.275 3.725 5 N -0.381 5.381 6 N -0.348 5.348 7 C 0.144 3.856 8 C -0.118 4.118 9 H 0.106 0.894 10 C 0.524 3.476 11 O -0.573 6.573 12 N -0.693 5.693 13 C 0.139 3.861 14 C 0.158 3.842 15 H 0.032 0.968 16 C -0.122 4.122 17 C -0.103 4.103 18 C -0.136 4.136 19 C 0.178 3.822 20 N -0.601 5.601 21 C -0.232 4.232 22 H 0.068 0.932 23 C -0.034 4.034 24 N -0.926 5.926 25 Si 0.933 3.067 26 H -0.270 1.270 27 H -0.293 1.293 28 H -0.299 1.299 29 C -0.097 4.097 30 C -0.036 4.036 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.411 0.589 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.061 0.939 45 H 0.048 0.952 46 H -0.001 1.001 47 H 0.246 0.754 48 H 0.081 0.919 49 H 0.104 0.896 50 H 0.132 0.868 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.499 3.281 -10.853 11.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.077 4.077 3 N -0.290 5.290 4 C -0.001 4.001 5 N -0.171 5.171 6 N -0.177 5.177 7 C 0.022 3.978 8 C -0.140 4.140 9 H 0.124 0.876 10 C 0.309 3.691 11 O -0.453 6.453 12 N -0.343 5.343 13 C 0.015 3.985 14 C 0.052 3.948 15 H 0.050 0.950 16 C -0.161 4.161 17 C -0.141 4.141 18 C -0.175 4.175 19 C 0.052 3.948 20 N -0.326 5.326 21 C -0.362 4.362 22 H 0.085 0.915 23 C -0.230 4.230 24 N -0.572 5.572 25 Si 0.763 3.237 26 H -0.195 1.195 27 H -0.221 1.221 28 H -0.226 1.226 29 C -0.136 4.136 30 C -0.076 4.076 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.248 0.752 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.017 0.983 47 H 0.055 0.945 48 H 0.100 0.900 49 H 0.122 0.878 50 H 0.150 0.850 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.328 3.105 -11.252 12.138 hybrid contribution -0.219 0.390 1.560 1.623 sum -3.546 3.495 -9.692 10.896 Atomic orbital electron populations 1.20240 0.81247 1.05097 1.04695 1.25245 0.99915 0.85143 0.97395 1.70208 1.00409 1.31279 1.27144 1.25014 0.95804 0.84205 0.95051 1.50190 1.05570 1.06355 1.55014 1.77889 0.87233 1.23770 1.28808 1.21707 0.77934 0.93523 1.04604 1.21643 0.91279 0.97175 1.03937 0.87571 1.20112 0.88135 0.81032 0.79849 1.90658 1.48461 1.67106 1.39095 1.46132 1.20193 1.22461 1.45473 1.21293 0.85745 0.92844 0.98656 1.20908 0.96166 0.93383 0.84315 0.95040 1.21891 0.97137 0.97289 0.99811 1.21350 1.01619 0.96976 0.94153 1.22054 0.98767 0.99247 0.97404 1.20562 0.92163 0.88587 0.93448 1.44269 1.83272 1.04990 1.00056 1.19293 1.24825 0.84435 1.07694 0.91475 1.25514 0.97712 0.98614 1.01184 1.70114 1.33238 1.32106 1.21788 0.85727 0.76955 0.82593 0.78430 1.19450 1.22071 1.22628 1.21524 0.98943 0.93207 0.99893 1.20631 0.84820 0.95753 1.06347 0.88889 0.88227 0.88967 0.88436 0.87901 0.75248 0.90394 0.93220 0.89919 0.92661 0.90850 0.92583 0.93536 0.92017 0.93309 0.98309 0.94469 0.90003 0.87801 0.85047 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.01 10.51 71.24 0.75 -0.26 16 2 C 0.20 5.89 8.15 138.48 1.13 7.02 16 3 N -0.56 -16.66 11.18 -179.31 -2.01 -18.66 16 4 C 0.28 7.55 7.72 138.36 1.07 8.62 16 5 N -0.38 -11.25 4.04 -338.53 -1.37 -12.62 16 6 N -0.35 -11.20 12.74 -51.08 -0.65 -11.85 16 7 C 0.14 3.78 6.42 86.49 0.56 4.33 16 8 C -0.12 -3.07 2.54 -11.42 -0.03 -3.10 16 9 H 0.11 2.94 8.12 -2.39 -0.02 2.92 16 10 C 0.52 16.39 7.14 87.66 0.63 17.02 16 11 O -0.57 -20.42 15.83 -3.04 -0.05 -20.47 16 12 N -0.69 -23.00 3.75 -463.05 -1.74 -24.73 16 13 C 0.14 4.57 4.43 86.38 0.38 4.95 16 14 C 0.16 5.47 3.01 44.98 0.14 5.61 16 15 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 16 C -0.12 -3.51 5.37 30.67 0.16 -3.34 16 17 C -0.10 -2.93 5.88 30.62 0.18 -2.75 16 18 C -0.14 -4.66 6.08 30.67 0.19 -4.48 16 19 C 0.18 7.80 5.26 86.36 0.45 8.26 16 20 N -0.60 -25.91 2.97 -675.25 -2.01 -27.92 16 21 C -0.23 -10.94 6.96 84.03 0.58 -10.36 16 22 H 0.07 3.21 5.87 -2.91 -0.02 3.19 16 23 C -0.03 -1.71 4.99 84.86 0.42 -1.29 16 24 N -0.93 -50.06 11.19 21.65 0.24 -49.82 16 25 Si 0.93 41.98 29.57 68.60 2.03 44.01 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 28 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 29 C -0.10 -2.07 4.68 30.80 0.14 -1.93 16 30 C -0.04 -0.70 6.33 30.07 0.19 -0.51 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.10 2.69 7.87 -2.39 -0.02 2.67 16 35 H 0.10 2.44 8.11 -2.39 -0.02 2.43 16 36 H 0.41 14.68 7.04 -92.70 -0.65 14.03 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.05 1.84 7.42 -2.38 -0.02 1.82 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.05 2.49 6.18 -2.39 -0.01 2.47 16 46 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.25 13.25 8.31 -92.71 -0.77 12.48 16 48 H 0.08 1.71 8.13 -2.39 -0.02 1.69 16 49 H 0.10 2.18 7.80 -2.39 -0.02 2.16 16 50 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 51 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -64.93 396.92 1.68 -63.25 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.28 Total: 31.01 kcal Atomic # 6 Polarization: 20.85 SS G_CDS: 6.94 Total: 27.79 kcal Atomic # 7 Polarization: -138.07 SS G_CDS: -7.52 Total: -145.59 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.05 Total: -20.47 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -64.93 1.68 -63.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024571406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.328 kcal (2) G-P(sol) polarization free energy of solvation -64.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds