Wall clock time and date at job start Wed Apr 1 2020 05:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33472 * 125.49504 * 2 1 4 4 C 1.30333 * 109.71998 * 179.97438 * 3 2 1 5 5 N 1.34678 * 108.04762 * 0.05306 * 4 3 2 6 6 N 1.30977 * 125.49657 * 179.68523 * 2 1 3 7 7 C 1.46301 * 125.04041 * 179.87248 * 5 4 3 8 8 C 1.53303 * 108.77542 * 342.96754 * 7 5 4 9 9 H 1.09002 * 109.46600 * 290.12719 * 8 7 5 10 10 C 1.50702 * 109.46562 * 170.14280 * 8 7 5 11 11 O 1.21279 * 119.99939 * 239.97722 * 10 8 7 12 12 N 1.34774 * 119.99766 * 59.98396 * 10 8 7 13 13 C 1.46506 * 119.99977 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47433 * 173.63225 * 13 12 10 15 15 H 1.08994 * 109.58506 * 56.44524 * 14 13 12 16 16 C 1.53192 * 109.58726 * 176.87482 * 14 13 12 17 17 C 1.53034 * 109.31153 * 174.42185 * 16 14 13 18 18 C 1.53037 * 109.54269 * 298.63277 * 17 16 14 19 19 C 1.53193 * 109.31094 * 61.36123 * 18 17 16 20 20 N 1.46917 * 108.77800 * 305.37113 * 19 18 17 21 21 C 1.36943 * 120.63302 * 233.63062 * 20 19 18 22 22 H 1.07993 * 119.99688 * 219.56321 * 21 20 19 23 23 C 1.38812 * 120.00001 * 39.55344 * 21 20 19 24 24 N 1.31622 * 119.99737 * 11.18773 * 23 21 20 25 25 Si 1.86791 * 120.00263 * 191.18285 * 23 21 20 26 26 H 1.48496 * 109.47114 * 60.00238 * 25 23 21 27 27 H 1.48501 * 109.47555 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47219 * 300.00123 * 25 23 21 29 29 C 1.53151 * 109.48907 * 50.13691 * 8 7 5 30 30 C 1.50930 * 127.89662 * 180.02562 * 4 3 2 31 31 H 1.09007 * 109.47138 * 90.02837 * 1 2 3 32 32 H 1.09006 * 109.47513 * 210.02370 * 1 2 3 33 33 H 1.08999 * 109.47703 * 330.02500 * 1 2 3 34 34 H 1.09004 * 109.58534 * 223.17614 * 7 5 4 35 35 H 1.09004 * 109.57938 * 102.75235 * 7 5 4 36 36 H 0.97001 * 120.00822 * 359.97438 * 12 10 8 37 37 H 1.09002 * 109.47201 * 293.63494 * 13 12 10 38 38 H 1.09002 * 109.47133 * 53.63146 * 13 12 10 39 39 H 1.09000 * 109.49644 * 294.37139 * 16 14 13 40 40 H 1.09003 * 109.50162 * 54.46853 * 16 14 13 41 41 H 1.09003 * 109.45935 * 178.61024 * 17 16 14 42 42 H 1.09004 * 109.45049 * 58.65006 * 17 16 14 43 43 H 1.09002 * 109.49421 * 301.41395 * 18 17 16 44 44 H 1.08998 * 109.52793 * 181.33695 * 18 17 16 45 45 H 1.09006 * 109.58499 * 185.57982 * 19 18 17 46 46 H 1.09001 * 109.70075 * 65.23203 * 19 18 17 47 47 H 0.96995 * 120.00110 * 179.97438 * 24 23 21 48 48 H 1.09005 * 109.50941 * 170.89064 * 29 8 7 49 49 H 1.09003 * 109.51006 * 50.75954 * 29 8 7 50 50 H 1.08993 * 109.71909 * 283.74253 * 30 4 3 51 51 H 1.09004 * 109.71729 * 44.34862 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2819 1.0867 0.0000 4 6 3.5362 0.7324 0.0005 5 7 3.5896 -0.6134 -0.0003 6 7 2.2675 -1.0663 0.0059 7 6 4.8198 -1.4052 -0.0027 8 6 5.9851 -0.5051 -0.4292 9 1 5.8841 -0.2562 -1.4856 10 6 7.2874 -1.2301 -0.2064 11 8 8.1199 -0.7649 0.5428 12 7 7.5268 -2.3954 -0.8399 13 6 8.7929 -3.1000 -0.6238 14 6 8.7472 -4.4583 -1.3264 15 1 8.5293 -4.3150 -2.3847 16 6 10.0975 -5.1642 -1.1679 17 6 10.0019 -6.5761 -1.7505 18 6 8.9461 -7.3758 -0.9839 19 6 7.5827 -6.6949 -1.1401 20 7 7.7029 -5.2931 -0.7170 21 6 6.8579 -4.7744 0.2276 22 1 6.4766 -3.7700 0.1178 23 6 6.4914 -5.5398 1.3262 24 7 7.1177 -6.6694 1.5796 25 14 5.1098 -4.9665 2.4449 26 1 3.8557 -4.8432 1.6593 27 1 4.9151 -5.9537 3.5371 28 1 5.4604 -3.6466 3.0282 29 6 5.9682 0.7810 0.4022 30 6 4.7521 1.6265 0.0013 31 1 -0.3634 -0.0005 -1.0277 32 1 -0.3634 -0.8898 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 4.7206 -2.2323 -0.7057 35 1 5.0059 -1.7941 0.9985 36 1 6.8608 -2.7676 -1.4389 37 1 9.6124 -2.5077 -1.0309 38 1 8.9482 -3.2487 0.4449 39 1 10.8661 -4.6027 -1.6991 40 1 10.3552 -5.2236 -0.1105 41 1 10.9685 -7.0719 -1.6613 42 1 9.7200 -6.5167 -2.8017 43 1 9.2146 -7.4144 0.0719 44 1 8.8949 -8.3886 -1.3834 45 1 6.8469 -7.2030 -0.5166 46 1 7.2687 -6.7362 -2.1831 47 1 6.8619 -7.2041 2.3474 48 1 6.8815 1.3464 0.2167 49 1 5.9038 0.5294 1.4608 50 1 4.9045 2.0409 -0.9952 51 1 4.6134 2.4354 0.7187 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024571407.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:17 Heat of formation + Delta-G solvation = 62.344970 kcal Electronic energy + Delta-G solvation = -32300.053441 eV Core-core repulsion = 28236.202893 eV Total energy + Delta-G solvation = -4063.850548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.36288 -39.86651 -37.87187 -36.54965 -34.44367 -33.24214 -32.99751 -32.11011 -30.87417 -30.02216 -29.57820 -28.44058 -26.06514 -24.88504 -24.27669 -23.02420 -22.16101 -20.91479 -20.67370 -20.30941 -19.40479 -18.96889 -17.44607 -16.69294 -16.38559 -15.99986 -15.74489 -15.26999 -15.14004 -14.49891 -14.31165 -14.20531 -14.06898 -13.86247 -13.67263 -13.39009 -13.21141 -12.98296 -12.92864 -12.63885 -12.41691 -12.22968 -12.01106 -11.95757 -11.75735 -11.53595 -11.38309 -11.22253 -11.14742 -10.98976 -10.85537 -10.41363 -10.30431 -10.26979 -10.03339 -9.88907 -9.71765 -9.68187 -9.51688 -9.34652 -9.27663 -8.56140 -8.35700 -6.55355 -5.87552 -3.45975 1.62226 2.17676 2.84762 2.87092 3.28790 3.33783 3.38626 3.44329 3.83964 4.17826 4.37550 4.41728 4.50399 4.66679 4.80874 5.06737 5.12891 5.14954 5.22457 5.29447 5.33952 5.44793 5.47335 5.48597 5.53627 5.67088 5.73397 5.75031 5.76462 5.80995 5.97540 6.02997 6.06110 6.15310 6.31958 6.34789 6.41768 6.46394 6.54003 6.67150 6.75823 6.76926 6.81228 6.86589 6.95847 7.05830 7.47345 7.61665 7.71261 7.85756 8.13285 8.42766 8.49771 9.12404 9.71098 10.35074 11.17195 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.003649 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.481743 B = 7670.693863 C = 8883.905300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.209 3.791 3 N -0.541 5.541 4 C 0.274 3.726 5 N -0.369 5.369 6 N -0.308 5.308 7 C 0.134 3.866 8 C -0.123 4.123 9 H 0.108 0.892 10 C 0.520 3.480 11 O -0.540 6.540 12 N -0.696 5.696 13 C 0.135 3.865 14 C 0.159 3.841 15 H 0.030 0.970 16 C -0.127 4.127 17 C -0.108 4.108 18 C -0.128 4.128 19 C 0.167 3.833 20 N -0.583 5.583 21 C -0.269 4.269 22 H 0.072 0.928 23 C 0.021 3.979 24 N -0.887 5.887 25 Si 0.882 3.118 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.283 1.283 29 C -0.108 4.108 30 C -0.039 4.039 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.404 0.596 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.046 0.954 43 H 0.076 0.924 44 H 0.036 0.964 45 H 0.084 0.916 46 H -0.003 1.003 47 H 0.254 0.746 48 H 0.100 0.900 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.995 11.242 -7.049 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.072 4.072 3 N -0.270 5.270 4 C -0.002 4.002 5 N -0.159 5.159 6 N -0.137 5.137 7 C 0.012 3.988 8 C -0.145 4.145 9 H 0.126 0.874 10 C 0.303 3.697 11 O -0.418 6.418 12 N -0.346 5.346 13 C 0.011 3.989 14 C 0.052 3.948 15 H 0.048 0.952 16 C -0.167 4.167 17 C -0.145 4.145 18 C -0.167 4.167 19 C 0.042 3.958 20 N -0.308 5.308 21 C -0.399 4.399 22 H 0.089 0.911 23 C -0.181 4.181 24 N -0.528 5.528 25 Si 0.712 3.288 26 H -0.204 1.204 27 H -0.215 1.215 28 H -0.209 1.209 29 C -0.147 4.147 30 C -0.079 4.079 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.240 0.760 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.102 0.898 46 H 0.015 0.985 47 H 0.064 0.936 48 H 0.118 0.882 49 H 0.099 0.901 50 H 0.118 0.882 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.750 10.934 -6.363 12.946 hybrid contribution -0.702 -0.327 0.528 0.937 sum -3.452 10.608 -5.834 12.589 Atomic orbital electron populations 1.20046 0.84012 1.03851 1.03516 1.24414 0.98215 0.85617 0.98995 1.70152 0.99810 1.30859 1.26169 1.24330 0.95031 0.84080 0.96747 1.50154 1.05691 1.05816 1.54281 1.78034 0.86518 1.22448 1.26663 1.21876 0.78034 0.93551 1.05355 1.21728 0.92942 0.96677 1.03172 0.87381 1.19798 0.87553 0.81488 0.80860 1.90694 1.47350 1.66840 1.36879 1.46070 1.20740 1.21356 1.46462 1.21414 0.83506 0.91414 1.02532 1.20890 0.89569 0.89524 0.94843 0.95232 1.21939 0.97329 0.96204 1.01208 1.21385 0.98446 0.95975 0.98734 1.21894 0.97290 0.96363 1.01136 1.20729 0.95455 0.85095 0.94555 1.44111 1.33274 1.07581 1.45793 1.19264 1.20794 1.00634 0.99221 0.91051 1.25324 0.98578 0.97835 0.96329 1.69929 1.40286 1.14406 1.28222 0.86719 0.82910 0.78229 0.80979 1.20407 1.21465 1.20895 1.21583 0.98331 0.94041 1.00698 1.20437 0.86802 0.95965 1.04701 0.90028 0.90096 0.89770 0.87304 0.88440 0.75982 0.92806 0.90052 0.93720 0.91740 0.93900 0.93546 0.90552 0.94502 0.89752 0.98507 0.93582 0.88196 0.90108 0.88152 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.57 10.51 36.00 0.38 -0.19 16 2 C 0.21 3.15 8.15 -156.43 -1.27 1.87 16 3 N -0.54 -8.18 11.18 -8.03 -0.09 -8.27 16 4 C 0.27 3.82 7.72 -155.77 -1.20 2.62 16 5 N -0.37 -5.74 4.04 -58.29 -0.24 -5.97 16 6 N -0.31 -5.28 12.74 32.50 0.41 -4.86 16 7 C 0.13 1.96 6.38 -3.99 -0.03 1.93 16 8 C -0.12 -1.49 2.54 -91.54 -0.23 -1.73 16 9 H 0.11 1.06 8.12 -51.93 -0.42 0.64 16 10 C 0.52 8.05 7.08 -10.99 -0.08 7.97 16 11 O -0.54 -10.09 15.82 5.56 0.09 -10.00 16 12 N -0.70 -10.98 3.19 -60.29 -0.19 -11.17 16 13 C 0.13 2.36 4.55 -4.04 -0.02 2.34 16 14 C 0.16 2.88 2.96 -67.60 -0.20 2.68 16 15 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 16 C -0.13 -2.20 5.37 -26.61 -0.14 -2.34 16 17 C -0.11 -1.83 5.88 -26.69 -0.16 -1.99 16 18 C -0.13 -2.53 6.07 -26.61 -0.16 -2.69 16 19 C 0.17 3.63 5.62 -3.71 -0.02 3.61 16 20 N -0.58 -12.68 2.92 -164.78 -0.48 -13.16 16 21 C -0.27 -6.37 7.86 -15.06 -0.12 -6.49 16 22 H 0.07 1.58 4.85 -52.49 -0.25 1.32 16 23 C 0.02 0.53 5.02 -17.43 -0.09 0.44 16 24 N -0.89 -23.84 11.17 55.49 0.62 -23.22 16 25 Si 0.88 20.94 29.57 -169.99 -5.03 15.91 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 C -0.11 -1.18 4.68 -26.43 -0.12 -1.31 16 30 C -0.04 -0.38 6.33 -27.54 -0.17 -0.56 16 31 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.11 1.57 7.87 -51.93 -0.41 1.16 16 35 H 0.10 1.64 8.12 -51.93 -0.42 1.22 16 36 H 0.40 5.98 7.33 -40.82 -0.30 5.68 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.72 7.76 -51.93 -0.40 1.32 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.75 7.88 -51.93 -0.41 1.34 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.08 2.10 6.10 -51.93 -0.32 1.78 16 46 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 47 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 48 H 0.10 1.01 7.80 -51.93 -0.41 0.60 16 49 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 50 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 396.81 15.07 5.98 5.98 Total: -1.00 -31.07 396.81 -10.96 -42.02 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -8.39 Total: 6.56 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -3.64 Total: 6.17 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: 0.03 Total: -66.65 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.07 -10.96 -42.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024571407.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.369 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds