Wall clock time and date at job start Wed Apr 1 2020 05:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33472 * 125.49504 * 2 1 4 4 C 1.30333 * 109.71998 * 179.97438 * 3 2 1 5 5 N 1.34678 * 108.04762 * 0.05306 * 4 3 2 6 6 N 1.30977 * 125.49657 * 179.68523 * 2 1 3 7 7 C 1.46301 * 125.04041 * 179.87248 * 5 4 3 8 8 C 1.53303 * 108.77542 * 342.96754 * 7 5 4 9 9 H 1.09002 * 109.46600 * 290.12719 * 8 7 5 10 10 C 1.50702 * 109.46562 * 170.14280 * 8 7 5 11 11 O 1.21279 * 119.99939 * 239.97722 * 10 8 7 12 12 N 1.34774 * 119.99766 * 59.98396 * 10 8 7 13 13 C 1.46506 * 119.99977 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47433 * 173.63225 * 13 12 10 15 15 H 1.08994 * 109.58506 * 56.44524 * 14 13 12 16 16 C 1.53192 * 109.58726 * 176.87482 * 14 13 12 17 17 C 1.53034 * 109.31153 * 174.42185 * 16 14 13 18 18 C 1.53037 * 109.54269 * 298.63277 * 17 16 14 19 19 C 1.53193 * 109.31094 * 61.36123 * 18 17 16 20 20 N 1.46917 * 108.77800 * 305.37113 * 19 18 17 21 21 C 1.36943 * 120.63302 * 233.63062 * 20 19 18 22 22 H 1.07993 * 119.99688 * 219.56321 * 21 20 19 23 23 C 1.38812 * 120.00001 * 39.55344 * 21 20 19 24 24 N 1.31622 * 119.99737 * 11.18773 * 23 21 20 25 25 Si 1.86791 * 120.00263 * 191.18285 * 23 21 20 26 26 H 1.48496 * 109.47114 * 60.00238 * 25 23 21 27 27 H 1.48501 * 109.47555 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47219 * 300.00123 * 25 23 21 29 29 C 1.53151 * 109.48907 * 50.13691 * 8 7 5 30 30 C 1.50930 * 127.89662 * 180.02562 * 4 3 2 31 31 H 1.09007 * 109.47138 * 90.02837 * 1 2 3 32 32 H 1.09006 * 109.47513 * 210.02370 * 1 2 3 33 33 H 1.08999 * 109.47703 * 330.02500 * 1 2 3 34 34 H 1.09004 * 109.58534 * 223.17614 * 7 5 4 35 35 H 1.09004 * 109.57938 * 102.75235 * 7 5 4 36 36 H 0.97001 * 120.00822 * 359.97438 * 12 10 8 37 37 H 1.09002 * 109.47201 * 293.63494 * 13 12 10 38 38 H 1.09002 * 109.47133 * 53.63146 * 13 12 10 39 39 H 1.09000 * 109.49644 * 294.37139 * 16 14 13 40 40 H 1.09003 * 109.50162 * 54.46853 * 16 14 13 41 41 H 1.09003 * 109.45935 * 178.61024 * 17 16 14 42 42 H 1.09004 * 109.45049 * 58.65006 * 17 16 14 43 43 H 1.09002 * 109.49421 * 301.41395 * 18 17 16 44 44 H 1.08998 * 109.52793 * 181.33695 * 18 17 16 45 45 H 1.09006 * 109.58499 * 185.57982 * 19 18 17 46 46 H 1.09001 * 109.70075 * 65.23203 * 19 18 17 47 47 H 0.96995 * 120.00110 * 179.97438 * 24 23 21 48 48 H 1.09005 * 109.50941 * 170.89064 * 29 8 7 49 49 H 1.09003 * 109.51006 * 50.75954 * 29 8 7 50 50 H 1.08993 * 109.71909 * 283.74253 * 30 4 3 51 51 H 1.09004 * 109.71729 * 44.34862 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2819 1.0867 0.0000 4 6 3.5362 0.7324 0.0005 5 7 3.5896 -0.6134 -0.0003 6 7 2.2675 -1.0663 0.0059 7 6 4.8198 -1.4052 -0.0027 8 6 5.9851 -0.5051 -0.4292 9 1 5.8841 -0.2562 -1.4856 10 6 7.2874 -1.2301 -0.2064 11 8 8.1199 -0.7649 0.5428 12 7 7.5268 -2.3954 -0.8399 13 6 8.7929 -3.1000 -0.6238 14 6 8.7472 -4.4583 -1.3264 15 1 8.5293 -4.3150 -2.3847 16 6 10.0975 -5.1642 -1.1679 17 6 10.0019 -6.5761 -1.7505 18 6 8.9461 -7.3758 -0.9839 19 6 7.5827 -6.6949 -1.1401 20 7 7.7029 -5.2931 -0.7170 21 6 6.8579 -4.7744 0.2276 22 1 6.4766 -3.7700 0.1178 23 6 6.4914 -5.5398 1.3262 24 7 7.1177 -6.6694 1.5796 25 14 5.1098 -4.9665 2.4449 26 1 3.8557 -4.8432 1.6593 27 1 4.9151 -5.9537 3.5371 28 1 5.4604 -3.6466 3.0282 29 6 5.9682 0.7810 0.4022 30 6 4.7521 1.6265 0.0013 31 1 -0.3634 -0.0005 -1.0277 32 1 -0.3634 -0.8898 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 4.7206 -2.2323 -0.7057 35 1 5.0059 -1.7941 0.9985 36 1 6.8608 -2.7676 -1.4389 37 1 9.6124 -2.5077 -1.0309 38 1 8.9482 -3.2487 0.4449 39 1 10.8661 -4.6027 -1.6991 40 1 10.3552 -5.2236 -0.1105 41 1 10.9685 -7.0719 -1.6613 42 1 9.7200 -6.5167 -2.8017 43 1 9.2146 -7.4144 0.0719 44 1 8.8949 -8.3886 -1.3834 45 1 6.8469 -7.2030 -0.5166 46 1 7.2687 -6.7362 -2.1831 47 1 6.8619 -7.2041 2.3474 48 1 6.8815 1.3464 0.2167 49 1 5.9038 0.5294 1.4608 50 1 4.9045 2.0409 -0.9952 51 1 4.6134 2.4354 0.7187 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024571407.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:16 Heat of formation + Delta-G solvation = 44.393680 kcal Electronic energy + Delta-G solvation = -32300.831867 eV Core-core repulsion = 28236.202893 eV Total energy + Delta-G solvation = -4064.628974 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.45570 -41.15122 -39.38514 -37.67819 -35.84076 -34.78960 -34.28803 -33.17336 -32.30035 -31.72577 -30.70123 -29.43703 -27.64708 -26.43461 -25.36521 -24.18798 -23.78229 -22.30336 -21.90922 -21.50424 -20.65270 -20.36934 -18.89922 -17.91168 -17.79971 -17.19352 -17.16357 -16.66324 -16.42563 -16.03082 -15.67248 -15.38906 -15.28823 -15.09564 -14.93351 -14.84470 -14.64420 -14.23023 -14.01109 -13.76546 -13.61053 -13.53073 -13.35307 -13.19243 -13.09202 -12.89794 -12.83360 -12.68077 -12.61439 -12.30395 -12.25378 -12.05826 -11.96641 -11.79041 -11.48024 -11.23668 -11.14552 -11.02684 -10.85843 -10.81150 -10.43235 -10.38383 -9.80748 -8.38717 -7.82069 -5.38863 0.52689 1.05576 1.32321 1.37277 1.39114 1.64234 1.77613 2.22622 2.43381 2.90160 3.13112 3.33126 3.43857 3.45862 3.62839 3.68853 3.79846 3.99971 4.06025 4.15502 4.20234 4.29961 4.33154 4.37832 4.50027 4.54357 4.60846 4.70623 4.71740 4.74421 4.84705 4.85501 4.91680 4.93757 4.95482 5.04197 5.09880 5.18100 5.25082 5.26761 5.33484 5.40264 5.44047 5.49409 5.58777 5.71902 5.73336 5.78722 5.96254 6.51826 6.57842 7.02683 7.23307 7.23838 7.88909 8.47156 9.19589 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.003649 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.481743 B = 7670.693863 C = 8883.905300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.206 3.794 3 N -0.558 5.558 4 C 0.277 3.723 5 N -0.382 5.382 6 N -0.356 5.356 7 C 0.137 3.863 8 C -0.108 4.108 9 H 0.144 0.856 10 C 0.520 3.480 11 O -0.572 6.572 12 N -0.696 5.696 13 C 0.142 3.858 14 C 0.158 3.842 15 H 0.057 0.943 16 C -0.124 4.124 17 C -0.101 4.101 18 C -0.121 4.121 19 C 0.166 3.834 20 N -0.597 5.597 21 C -0.247 4.247 22 H 0.087 0.913 23 C -0.030 4.030 24 N -0.914 5.914 25 Si 0.923 3.077 26 H -0.280 1.280 27 H -0.301 1.301 28 H -0.289 1.289 29 C -0.103 4.103 30 C -0.031 4.031 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.411 0.589 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.080 0.920 40 H 0.033 0.967 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.036 0.964 44 H 0.050 0.950 45 H 0.047 0.953 46 H 0.015 0.985 47 H 0.242 0.758 48 H 0.116 0.884 49 H 0.058 0.942 50 H 0.134 0.866 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.563 13.633 -9.860 17.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 N -0.287 5.287 4 C 0.001 3.999 5 N -0.173 5.173 6 N -0.185 5.185 7 C 0.015 3.985 8 C -0.130 4.130 9 H 0.162 0.838 10 C 0.306 3.694 11 O -0.451 6.451 12 N -0.346 5.346 13 C 0.018 3.982 14 C 0.052 3.948 15 H 0.075 0.925 16 C -0.164 4.164 17 C -0.139 4.139 18 C -0.160 4.160 19 C 0.040 3.960 20 N -0.322 5.322 21 C -0.378 4.378 22 H 0.104 0.896 23 C -0.228 4.228 24 N -0.559 5.559 25 Si 0.754 3.246 26 H -0.206 1.206 27 H -0.228 1.228 28 H -0.216 1.216 29 C -0.142 4.142 30 C -0.070 4.070 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.248 0.752 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.033 0.967 47 H 0.052 0.948 48 H 0.134 0.866 49 H 0.077 0.923 50 H 0.152 0.848 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.331 13.338 -9.198 16.369 hybrid contribution -0.837 -1.015 1.359 1.892 sum -3.168 12.323 -7.839 14.945 Atomic orbital electron populations 1.20242 0.81326 1.04797 1.04958 1.25238 0.99875 0.85152 0.97267 1.70218 1.00342 1.30941 1.27189 1.25201 0.96040 0.83908 0.94762 1.50150 1.05308 1.06494 1.55303 1.77975 0.87529 1.24141 1.28885 1.21754 0.78964 0.94270 1.03523 1.21687 0.89675 0.96153 1.05491 0.83816 1.20290 0.88243 0.81127 0.79779 1.90684 1.48803 1.67623 1.38037 1.46052 1.20433 1.21437 1.46660 1.21244 0.85144 0.91893 0.99895 1.21058 0.89003 0.89066 0.95644 0.92515 1.21898 0.97613 0.96974 0.99878 1.21348 0.98224 0.95174 0.99153 1.21756 0.97236 0.97696 0.99358 1.20655 0.95719 0.85092 0.94490 1.44309 1.34442 1.08029 1.45412 1.19657 1.19410 1.00483 0.98208 0.89595 1.25785 1.00413 0.98651 0.97926 1.70055 1.41776 1.15491 1.28558 0.86077 0.81758 0.76981 0.79807 1.20612 1.22779 1.21622 1.21567 0.99756 0.93674 0.99168 1.20656 0.83987 0.95184 1.07139 0.88219 0.89695 0.88220 0.87545 0.91617 0.75230 0.90369 0.94330 0.90112 0.94838 0.92067 0.91390 0.94479 0.93097 0.93500 0.96700 0.94801 0.86585 0.92305 0.84829 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.04 10.51 71.23 0.75 -0.29 16 2 C 0.21 6.00 8.15 138.48 1.13 7.13 16 3 N -0.56 -15.91 11.18 -179.30 -2.01 -17.92 16 4 C 0.28 7.19 7.72 138.37 1.07 8.25 16 5 N -0.38 -11.63 4.04 -338.32 -1.37 -13.00 16 6 N -0.36 -12.17 12.74 -51.08 -0.65 -12.82 16 7 C 0.14 3.97 6.38 86.52 0.55 4.52 16 8 C -0.11 -2.41 2.54 -11.39 -0.03 -2.44 16 9 H 0.14 2.25 8.12 -2.39 -0.02 2.23 16 10 C 0.52 15.40 7.08 87.66 0.62 16.02 16 11 O -0.57 -20.87 15.82 -3.03 -0.05 -20.91 16 12 N -0.70 -20.84 3.19 -463.05 -1.48 -22.32 16 13 C 0.14 4.78 4.55 86.38 0.39 5.17 16 14 C 0.16 5.41 2.96 44.97 0.13 5.54 16 15 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 16 C -0.12 -4.01 5.37 30.67 0.16 -3.84 16 17 C -0.10 -3.17 5.88 30.62 0.18 -2.99 16 18 C -0.12 -4.75 6.07 30.67 0.19 -4.57 16 19 C 0.17 7.19 5.62 86.36 0.49 7.67 16 20 N -0.60 -25.73 2.92 -675.24 -1.98 -27.71 16 21 C -0.25 -11.82 7.86 84.03 0.66 -11.16 16 22 H 0.09 3.81 4.85 -2.91 -0.01 3.80 16 23 C -0.03 -1.62 5.02 84.86 0.43 -1.19 16 24 N -0.91 -51.53 11.17 21.65 0.24 -51.29 16 25 Si 0.92 45.11 29.57 68.60 2.03 47.14 16 26 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 27 H -0.30 -15.20 7.11 99.48 0.71 -14.50 16 28 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 29 C -0.10 -2.02 4.68 30.79 0.14 -1.88 16 30 C -0.03 -0.49 6.33 30.07 0.19 -0.30 16 31 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.11 3.04 7.87 -2.39 -0.02 3.02 16 35 H 0.07 2.29 8.12 -2.38 -0.02 2.27 16 36 H 0.41 11.30 7.33 -92.71 -0.68 10.62 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.04 1.64 7.76 -2.39 -0.02 1.63 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.04 1.73 7.88 -2.39 -0.02 1.71 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.05 2.40 6.10 -2.38 -0.01 2.38 16 46 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.24 13.76 8.31 -92.71 -0.77 12.99 16 48 H 0.12 1.97 7.80 -2.38 -0.02 1.95 16 49 H 0.06 1.42 8.12 -2.39 -0.02 1.40 16 50 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -71.37 396.81 2.05 -69.31 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.26 Total: 23.86 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 7.05 Total: 25.65 kcal Atomic # 7 Polarization: -137.82 SS G_CDS: -7.24 Total: -145.05 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.05 Total: -20.91 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -71.37 2.05 -69.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024571407.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.708 kcal (2) G-P(sol) polarization free energy of solvation -71.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds