Wall clock time and date at job start Wed Apr 1 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30838 * 126.46405 * 2 1 4 4 N 1.28905 * 109.74298 * 180.02562 * 3 2 1 5 5 C 1.29832 * 109.47697 * 0.02993 * 4 3 2 6 6 N 1.34691 * 126.46539 * 180.02562 * 2 1 3 7 7 C 1.46256 * 128.85124 * 359.93075 * 6 2 1 8 8 C 1.53313 * 108.73355 * 197.03961 * 7 6 2 9 9 H 1.09008 * 109.44761 * 69.73006 * 8 7 6 10 10 C 1.50701 * 109.45140 * 189.67734 * 8 7 6 11 11 O 1.21274 * 119.99894 * 7.13561 * 10 8 7 12 12 N 1.34768 * 119.99834 * 187.12708 * 10 8 7 13 13 C 1.46503 * 120.00266 * 184.52156 * 12 10 8 14 14 C 1.52998 * 109.47297 * 183.38081 * 13 12 10 15 15 H 1.08994 * 109.58456 * 58.52496 * 14 13 12 16 16 C 1.53193 * 109.58436 * 178.80750 * 14 13 12 17 17 C 1.53042 * 109.31305 * 174.42248 * 16 14 13 18 18 C 1.53035 * 109.53809 * 298.63136 * 17 16 14 19 19 C 1.53200 * 109.31071 * 61.36570 * 18 17 16 20 20 N 1.46925 * 108.77282 * 305.36147 * 19 18 17 21 21 C 1.36938 * 120.62973 * 233.58293 * 20 19 18 22 22 H 1.08006 * 119.99630 * 152.35370 * 21 20 19 23 23 C 1.38803 * 120.00171 * 332.35951 * 21 20 19 24 24 N 1.31619 * 120.00499 * 339.87032 * 23 21 20 25 25 Si 1.86798 * 120.00071 * 159.87319 * 23 21 20 26 26 H 1.48499 * 109.47371 * 61.33616 * 25 23 21 27 27 H 1.48501 * 109.47496 * 181.33632 * 25 23 21 28 28 H 1.48500 * 109.47258 * 301.33763 * 25 23 21 29 29 C 1.53140 * 109.58685 * 309.71889 * 8 7 6 30 30 C 1.50808 * 128.52447 * 179.86518 * 5 4 3 31 31 H 1.09006 * 109.47064 * 269.99646 * 1 2 3 32 32 H 1.08996 * 109.47500 * 29.99921 * 1 2 3 33 33 H 1.08998 * 109.46922 * 150.00138 * 1 2 3 34 34 H 1.09005 * 109.59111 * 77.26438 * 7 6 2 35 35 H 1.08998 * 109.58929 * 316.82304 * 7 6 2 36 36 H 0.97003 * 120.00333 * 4.52167 * 12 10 8 37 37 H 1.09000 * 109.47054 * 303.38482 * 13 12 10 38 38 H 1.09008 * 109.46586 * 63.38044 * 13 12 10 39 39 H 1.09004 * 109.50010 * 294.37322 * 16 14 13 40 40 H 1.09002 * 109.50002 * 54.43789 * 16 14 13 41 41 H 1.08997 * 109.45995 * 58.65657 * 17 16 14 42 42 H 1.09000 * 109.46171 * 178.62654 * 17 16 14 43 43 H 1.08997 * 109.50155 * 181.31336 * 18 17 16 44 44 H 1.08997 * 109.50258 * 301.41542 * 18 17 16 45 45 H 1.09000 * 109.58611 * 65.15261 * 19 18 17 46 46 H 1.08997 * 109.58478 * 185.43553 * 19 18 17 47 47 H 0.97001 * 120.00693 * 180.02562 * 24 23 21 48 48 H 1.08999 * 109.49441 * 189.37626 * 29 8 7 49 49 H 1.09003 * 109.49621 * 309.47155 * 29 8 7 50 50 H 1.09003 * 109.72593 * 315.62315 * 30 5 4 51 51 H 1.08999 * 109.72610 * 76.25136 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6814 -0.0005 5 6 3.5816 -0.6155 -0.0015 6 7 2.3075 -1.0832 -0.0005 7 6 1.9368 -2.4980 0.0003 8 6 3.1553 -3.3261 0.4248 9 1 3.3626 -3.1517 1.4806 10 6 2.8691 -4.7892 0.2045 11 8 1.8539 -5.1294 -0.3649 12 7 3.7416 -5.7194 0.6401 13 6 3.5137 -7.1351 0.3397 14 6 4.5955 -7.9803 1.0151 15 1 4.5749 -7.8083 2.0911 16 6 4.3426 -9.4636 0.7272 17 6 5.5014 -10.2924 1.2860 18 6 6.8040 -9.8818 0.5957 19 6 7.0848 -8.4032 0.8821 20 7 5.9135 -7.6128 0.4797 21 6 6.0477 -6.5534 -0.3776 22 1 5.2218 -6.2625 -1.0099 23 6 7.2450 -5.8535 -0.4339 24 7 8.0960 -5.9234 0.5678 25 14 7.6488 -4.8124 -1.9313 26 1 6.6294 -3.7429 -2.0801 27 1 8.9897 -4.1977 -1.7599 28 1 7.6483 -5.6689 -3.1444 29 6 4.3721 -2.9132 -0.4084 30 6 4.8052 -1.4970 -0.0053 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 1.6242 -2.7945 -1.0010 35 1 1.1205 -2.6615 0.7037 36 1 4.5204 -5.4517 1.1526 37 1 2.5340 -7.4327 0.7134 38 1 3.5532 -7.2885 -0.7388 39 1 3.4117 -9.7729 1.2025 40 1 4.2702 -9.6181 -0.3494 41 1 5.5882 -10.1184 2.3585 42 1 5.3121 -11.3503 1.1040 43 1 7.6251 -10.4885 0.9774 44 1 6.7091 -10.0323 -0.4796 45 1 7.2698 -8.2661 1.9475 46 1 7.9581 -8.0807 0.3151 47 1 8.9326 -5.4340 0.5287 48 1 5.1907 -3.6095 -0.2264 49 1 4.1103 -2.9272 -1.4664 50 1 5.5306 -1.1165 -0.7245 51 1 5.2488 -1.5148 0.9902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024810186.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:33 Heat of formation + Delta-G solvation = 50.180662 kcal Electronic energy + Delta-G solvation = -32340.505114 eV Core-core repulsion = 28276.127081 eV Total energy + Delta-G solvation = -4064.378032 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.30011 -39.86317 -38.02706 -36.64543 -34.48086 -34.06092 -33.20418 -31.79009 -30.82574 -30.35130 -30.01872 -27.37276 -26.40498 -25.29192 -24.22340 -23.05913 -22.28571 -21.40939 -20.85286 -20.27898 -19.44897 -19.14370 -17.49250 -16.73707 -16.51135 -15.90361 -15.72859 -15.65101 -15.07924 -14.69986 -14.19431 -14.14856 -14.08766 -13.95461 -13.61293 -13.53986 -13.45175 -13.18699 -12.93863 -12.79468 -12.56891 -12.24915 -12.17576 -12.07511 -11.92997 -11.49829 -11.33037 -11.23490 -11.12119 -10.97629 -10.76989 -10.63993 -10.41868 -10.30062 -10.24816 -10.11644 -10.10820 -9.71585 -9.58560 -9.38829 -8.94216 -8.71267 -8.45449 -6.85703 -5.98529 -3.39771 1.81297 2.39454 2.82536 2.87823 3.19874 3.32284 3.35483 3.52840 4.10970 4.26196 4.29731 4.40754 4.55192 4.63466 4.84854 5.01522 5.08264 5.16330 5.18853 5.22385 5.25691 5.28716 5.37130 5.50676 5.52796 5.53443 5.58338 5.62908 5.81928 5.84480 5.91138 5.95927 6.01671 6.02265 6.13983 6.18341 6.21929 6.26125 6.28604 6.48457 6.59153 6.62758 6.73527 6.82864 6.85787 6.94985 7.25049 7.50231 7.63978 7.97208 8.23558 8.54936 8.76674 9.00716 9.64849 10.22331 11.08249 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.003483 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.264764 B = 8037.977751 C = 9515.528216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.172 3.828 3 N -0.303 5.303 4 N -0.295 5.295 5 C 0.181 3.819 6 N -0.468 5.468 7 C 0.125 3.875 8 C -0.120 4.120 9 H 0.106 0.894 10 C 0.520 3.480 11 O -0.562 6.562 12 N -0.688 5.688 13 C 0.133 3.867 14 C 0.161 3.839 15 H 0.032 0.968 16 C -0.127 4.127 17 C -0.107 4.107 18 C -0.144 4.144 19 C 0.173 3.827 20 N -0.588 5.588 21 C -0.259 4.259 22 H 0.071 0.929 23 C 0.011 3.989 24 N -0.892 5.892 25 Si 0.883 3.117 26 H -0.275 1.275 27 H -0.290 1.290 28 H -0.285 1.285 29 C -0.122 4.122 30 C -0.032 4.032 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.418 0.582 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.018 0.982 46 H 0.083 0.917 47 H 0.256 0.744 48 H 0.112 0.888 49 H 0.075 0.925 50 H 0.103 0.897 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.968 0.572 2.191 10.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 N -0.144 5.144 4 N -0.134 5.134 5 C -0.087 4.087 6 N -0.159 5.159 7 C 0.002 3.998 8 C -0.142 4.142 9 H 0.124 0.876 10 C 0.304 3.696 11 O -0.443 6.443 12 N -0.338 5.338 13 C 0.010 3.990 14 C 0.054 3.946 15 H 0.050 0.950 16 C -0.167 4.167 17 C -0.145 4.145 18 C -0.183 4.183 19 C 0.047 3.953 20 N -0.312 5.312 21 C -0.388 4.388 22 H 0.089 0.911 23 C -0.189 4.189 24 N -0.535 5.535 25 Si 0.712 3.288 26 H -0.201 1.201 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.160 4.160 30 C -0.072 4.072 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.256 0.744 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.102 0.898 47 H 0.066 0.934 48 H 0.130 0.870 49 H 0.094 0.906 50 H 0.121 0.879 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.080 1.854 1.818 10.409 hybrid contribution 0.405 -0.790 -0.588 1.065 sum -9.674 1.064 1.230 9.810 Atomic orbital electron populations 1.20188 0.83866 1.04475 1.03904 1.24612 0.97016 0.82900 1.04965 1.74440 0.96238 1.23806 1.19921 1.74032 1.12137 1.08173 1.19106 1.24838 0.87206 0.92465 1.04153 1.46016 1.06995 1.08556 1.54322 1.21784 0.97795 0.75194 1.05060 1.21558 0.95999 0.93439 1.03164 0.87626 1.19883 0.83490 0.86909 0.79332 1.90663 1.27125 1.82448 1.44028 1.46000 1.26502 1.06690 1.54572 1.21349 0.97223 0.79679 1.00796 1.20709 0.86714 0.91658 0.95504 0.95046 1.21941 0.97143 0.96629 1.01014 1.21360 0.95867 0.97736 0.99557 1.22181 0.95875 1.00373 0.99892 1.20749 0.91139 0.85778 0.97630 1.44090 1.00867 1.32774 1.53470 1.19152 0.99601 1.06451 1.13605 0.91132 1.24938 0.98916 0.98150 0.96886 1.70038 1.10979 1.43964 1.28566 0.86732 0.77877 0.80389 0.83813 1.20117 1.21578 1.21191 1.21848 0.97624 0.96642 0.99936 1.20267 0.90907 0.91220 1.04777 0.89729 0.88819 0.90355 0.87918 0.88298 0.74406 0.92326 0.91452 0.93025 0.92049 0.92860 0.93663 0.93480 0.92785 0.96341 0.89834 0.93390 0.86985 0.90632 0.87875 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.29 36.01 0.37 -0.19 16 2 C 0.17 2.32 8.07 -155.45 -1.25 1.07 16 3 N -0.30 -5.08 12.23 32.70 0.40 -4.68 16 4 N -0.30 -5.16 12.21 32.76 0.40 -4.76 16 5 C 0.18 2.73 7.75 -155.30 -1.20 1.53 16 6 N -0.47 -6.28 3.11 -110.86 -0.35 -6.63 16 7 C 0.12 1.47 5.53 -4.01 -0.02 1.45 16 8 C -0.12 -1.52 2.53 -91.54 -0.23 -1.75 16 9 H 0.11 1.20 8.12 -51.92 -0.42 0.78 16 10 C 0.52 7.94 7.07 -10.99 -0.08 7.86 16 11 O -0.56 -9.91 15.78 5.56 0.09 -9.82 16 12 N -0.69 -11.01 3.82 -60.29 -0.23 -11.24 16 13 C 0.13 2.20 4.42 -4.04 -0.02 2.18 16 14 C 0.16 2.78 3.00 -67.60 -0.20 2.58 16 15 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 16 C -0.13 -1.94 5.37 -26.61 -0.14 -2.09 16 17 C -0.11 -1.62 5.88 -26.69 -0.16 -1.78 16 18 C -0.14 -2.48 6.08 -26.61 -0.16 -2.64 16 19 C 0.17 3.59 5.32 -3.71 -0.02 3.57 16 20 N -0.59 -12.12 2.98 -164.78 -0.49 -12.61 16 21 C -0.26 -5.74 7.12 -15.06 -0.11 -5.84 16 22 H 0.07 1.58 5.72 -52.48 -0.30 1.28 16 23 C 0.01 0.26 4.83 -17.43 -0.08 0.17 16 24 N -0.89 -22.17 11.37 55.49 0.63 -21.53 16 25 Si 0.88 18.97 29.24 -169.99 -4.97 13.99 16 26 H -0.28 -5.52 6.92 56.52 0.39 -5.13 16 27 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 29 C -0.12 -1.68 5.24 -26.41 -0.14 -1.82 16 30 C -0.03 -0.43 6.34 -27.58 -0.17 -0.60 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.55 8.03 -51.93 -0.42 0.14 16 34 H 0.10 1.27 7.69 -51.93 -0.40 0.87 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.42 7.03 7.37 -40.82 -0.30 6.72 16 37 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 38 H 0.07 1.23 7.34 -51.92 -0.38 0.85 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 1.99 6.14 -51.93 -0.32 1.67 16 47 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 48 H 0.11 1.75 7.45 -51.93 -0.39 1.36 16 49 H 0.07 1.10 8.12 -51.93 -0.42 0.67 16 50 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 51 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -28.36 395.01 -10.60 -38.97 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -8.41 Total: 8.66 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -3.62 Total: 3.70 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.36 Total: -61.45 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.97 Total: 13.99 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -28.36 -10.60 -38.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024810186.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.147 kcal (2) G-P(sol) polarization free energy of solvation -28.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds