Wall clock time and date at job start Wed Apr 1 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30838 * 126.46405 * 2 1 4 4 N 1.28905 * 109.74298 * 180.02562 * 3 2 1 5 5 C 1.29832 * 109.47697 * 0.02993 * 4 3 2 6 6 N 1.34691 * 126.46539 * 180.02562 * 2 1 3 7 7 C 1.46256 * 128.85124 * 359.93075 * 6 2 1 8 8 C 1.53313 * 108.73355 * 197.03961 * 7 6 2 9 9 H 1.09008 * 109.44761 * 69.73006 * 8 7 6 10 10 C 1.50701 * 109.45140 * 189.67734 * 8 7 6 11 11 O 1.21274 * 119.99894 * 7.13561 * 10 8 7 12 12 N 1.34768 * 119.99834 * 187.12708 * 10 8 7 13 13 C 1.46503 * 120.00266 * 184.52156 * 12 10 8 14 14 C 1.52998 * 109.47297 * 183.38081 * 13 12 10 15 15 H 1.08994 * 109.58456 * 58.52496 * 14 13 12 16 16 C 1.53193 * 109.58436 * 178.80750 * 14 13 12 17 17 C 1.53042 * 109.31305 * 174.42248 * 16 14 13 18 18 C 1.53035 * 109.53809 * 298.63136 * 17 16 14 19 19 C 1.53200 * 109.31071 * 61.36570 * 18 17 16 20 20 N 1.46925 * 108.77282 * 305.36147 * 19 18 17 21 21 C 1.36938 * 120.62973 * 233.58293 * 20 19 18 22 22 H 1.08006 * 119.99630 * 152.35370 * 21 20 19 23 23 C 1.38803 * 120.00171 * 332.35951 * 21 20 19 24 24 N 1.31619 * 120.00499 * 339.87032 * 23 21 20 25 25 Si 1.86798 * 120.00071 * 159.87319 * 23 21 20 26 26 H 1.48499 * 109.47371 * 61.33616 * 25 23 21 27 27 H 1.48501 * 109.47496 * 181.33632 * 25 23 21 28 28 H 1.48500 * 109.47258 * 301.33763 * 25 23 21 29 29 C 1.53140 * 109.58685 * 309.71889 * 8 7 6 30 30 C 1.50808 * 128.52447 * 179.86518 * 5 4 3 31 31 H 1.09006 * 109.47064 * 269.99646 * 1 2 3 32 32 H 1.08996 * 109.47500 * 29.99921 * 1 2 3 33 33 H 1.08998 * 109.46922 * 150.00138 * 1 2 3 34 34 H 1.09005 * 109.59111 * 77.26438 * 7 6 2 35 35 H 1.08998 * 109.58929 * 316.82304 * 7 6 2 36 36 H 0.97003 * 120.00333 * 4.52167 * 12 10 8 37 37 H 1.09000 * 109.47054 * 303.38482 * 13 12 10 38 38 H 1.09008 * 109.46586 * 63.38044 * 13 12 10 39 39 H 1.09004 * 109.50010 * 294.37322 * 16 14 13 40 40 H 1.09002 * 109.50002 * 54.43789 * 16 14 13 41 41 H 1.08997 * 109.45995 * 58.65657 * 17 16 14 42 42 H 1.09000 * 109.46171 * 178.62654 * 17 16 14 43 43 H 1.08997 * 109.50155 * 181.31336 * 18 17 16 44 44 H 1.08997 * 109.50258 * 301.41542 * 18 17 16 45 45 H 1.09000 * 109.58611 * 65.15261 * 19 18 17 46 46 H 1.08997 * 109.58478 * 185.43553 * 19 18 17 47 47 H 0.97001 * 120.00693 * 180.02562 * 24 23 21 48 48 H 1.08999 * 109.49441 * 189.37626 * 29 8 7 49 49 H 1.09003 * 109.49621 * 309.47155 * 29 8 7 50 50 H 1.09003 * 109.72593 * 315.62315 * 30 5 4 51 51 H 1.08999 * 109.72610 * 76.25136 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6814 -0.0005 5 6 3.5816 -0.6155 -0.0015 6 7 2.3075 -1.0832 -0.0005 7 6 1.9368 -2.4980 0.0003 8 6 3.1553 -3.3261 0.4248 9 1 3.3626 -3.1517 1.4806 10 6 2.8691 -4.7892 0.2045 11 8 1.8539 -5.1294 -0.3649 12 7 3.7416 -5.7194 0.6401 13 6 3.5137 -7.1351 0.3397 14 6 4.5955 -7.9803 1.0151 15 1 4.5749 -7.8083 2.0911 16 6 4.3426 -9.4636 0.7272 17 6 5.5014 -10.2924 1.2860 18 6 6.8040 -9.8818 0.5957 19 6 7.0848 -8.4032 0.8821 20 7 5.9135 -7.6128 0.4797 21 6 6.0477 -6.5534 -0.3776 22 1 5.2218 -6.2625 -1.0099 23 6 7.2450 -5.8535 -0.4339 24 7 8.0960 -5.9234 0.5678 25 14 7.6488 -4.8124 -1.9313 26 1 6.6294 -3.7429 -2.0801 27 1 8.9897 -4.1977 -1.7599 28 1 7.6483 -5.6689 -3.1444 29 6 4.3721 -2.9132 -0.4084 30 6 4.8052 -1.4970 -0.0053 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 1.6242 -2.7945 -1.0010 35 1 1.1205 -2.6615 0.7037 36 1 4.5204 -5.4517 1.1526 37 1 2.5340 -7.4327 0.7134 38 1 3.5532 -7.2885 -0.7388 39 1 3.4117 -9.7729 1.2025 40 1 4.2702 -9.6181 -0.3494 41 1 5.5882 -10.1184 2.3585 42 1 5.3121 -11.3503 1.1040 43 1 7.6251 -10.4885 0.9774 44 1 6.7091 -10.0323 -0.4796 45 1 7.2698 -8.2661 1.9475 46 1 7.9581 -8.0807 0.3151 47 1 8.9326 -5.4340 0.5287 48 1 5.1907 -3.6095 -0.2264 49 1 4.1103 -2.9272 -1.4664 50 1 5.5306 -1.1165 -0.7245 51 1 5.2488 -1.5148 0.9902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024810186.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:31 Heat of formation + Delta-G solvation = 35.666705 kcal Electronic energy + Delta-G solvation = -32341.134486 eV Core-core repulsion = 28276.127081 eV Total energy + Delta-G solvation = -4065.007405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.39755 -41.12220 -39.44378 -37.80689 -35.77919 -35.14177 -34.85250 -32.92328 -32.08815 -31.65696 -31.35189 -28.34086 -27.79885 -26.77627 -25.44140 -24.21324 -23.79446 -22.50605 -22.19252 -21.49393 -20.73578 -20.43138 -18.75518 -18.10788 -17.64166 -17.30000 -17.07175 -16.91293 -16.32636 -15.92559 -15.69937 -15.56918 -15.19062 -14.95623 -14.89809 -14.75316 -14.70693 -14.44551 -14.03485 -13.92372 -13.60255 -13.51117 -13.42030 -13.26611 -13.18265 -12.79368 -12.69591 -12.64672 -12.53995 -12.31019 -12.21416 -12.10735 -11.92081 -11.76422 -11.52379 -11.41285 -11.18194 -11.10735 -11.06448 -10.73789 -10.43688 -10.05307 -9.84563 -8.57422 -7.78568 -5.19176 0.76389 1.36460 1.45619 1.55956 1.56185 1.59651 1.73594 2.33290 2.54290 3.05962 3.25269 3.35311 3.42291 3.53436 3.58460 3.63958 3.93348 3.98235 4.02840 4.14147 4.18475 4.23953 4.29983 4.31671 4.46029 4.52932 4.57655 4.60830 4.65657 4.68676 4.79340 4.79794 4.86374 4.89485 4.92542 4.97826 5.02017 5.03140 5.16510 5.19637 5.24189 5.29726 5.39140 5.48382 5.61589 5.65660 5.80452 5.85049 5.85605 6.46133 6.67987 7.22529 7.27531 7.64116 7.94249 8.47694 9.26386 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.003483 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.264764 B = 8037.977751 C = 9515.528216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.183 3.817 3 N -0.345 5.345 4 N -0.332 5.332 5 C 0.176 3.824 6 N -0.467 5.467 7 C 0.129 3.871 8 C -0.111 4.111 9 H 0.124 0.876 10 C 0.524 3.476 11 O -0.582 6.582 12 N -0.691 5.691 13 C 0.139 3.861 14 C 0.160 3.840 15 H 0.033 0.967 16 C -0.123 4.123 17 C -0.103 4.103 18 C -0.136 4.136 19 C 0.177 3.823 20 N -0.600 5.600 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.024 4.024 24 N -0.920 5.920 25 Si 0.918 3.082 26 H -0.254 1.254 27 H -0.304 1.304 28 H -0.301 1.301 29 C -0.115 4.115 30 C -0.027 4.027 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.414 0.586 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.001 0.999 46 H 0.048 0.952 47 H 0.247 0.753 48 H 0.094 0.906 49 H 0.066 0.934 50 H 0.103 0.897 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.523 -0.513 2.805 12.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 N -0.185 5.185 4 N -0.171 5.171 5 C -0.093 4.093 6 N -0.158 5.158 7 C 0.007 3.993 8 C -0.132 4.132 9 H 0.142 0.858 10 C 0.310 3.690 11 O -0.464 6.464 12 N -0.340 5.340 13 C 0.015 3.985 14 C 0.054 3.946 15 H 0.051 0.949 16 C -0.162 4.162 17 C -0.141 4.141 18 C -0.175 4.175 19 C 0.051 3.949 20 N -0.325 5.325 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.221 4.221 24 N -0.565 5.565 25 Si 0.748 3.252 26 H -0.179 1.179 27 H -0.231 1.231 28 H -0.229 1.229 29 C -0.154 4.154 30 C -0.067 4.067 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.142 0.858 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.019 0.981 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.113 0.887 49 H 0.085 0.915 50 H 0.121 0.879 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.670 0.769 2.427 12.924 hybrid contribution 1.143 -0.514 -0.784 1.478 sum -11.528 0.255 1.643 11.647 Atomic orbital electron populations 1.20458 0.80389 1.05887 1.05651 1.25482 0.98725 0.82037 1.02275 1.74363 0.96438 1.25503 1.22184 1.73939 1.13066 1.09527 1.20592 1.25028 0.88256 0.92153 1.03883 1.46119 1.06459 1.09140 1.54108 1.21850 0.97800 0.74008 1.05630 1.21484 0.95973 0.91721 1.04049 0.85835 1.20168 0.82811 0.87651 0.78414 1.90655 1.27954 1.82971 1.44811 1.46019 1.26521 1.06819 1.54651 1.21275 0.97753 0.79947 0.99518 1.20862 0.85013 0.93380 0.95307 0.94948 1.21901 0.98633 0.94787 1.00913 1.21343 0.94192 0.99189 0.99360 1.22048 0.98009 0.97737 0.99712 1.20560 0.90258 0.88231 0.95827 1.44282 1.02208 1.32444 1.53533 1.19229 0.98970 1.05760 1.12842 0.91215 1.25263 0.99343 0.99478 0.98015 1.70139 1.11103 1.45436 1.29866 0.86142 0.77465 0.79978 0.81579 1.17877 1.23133 1.22851 1.21713 0.97507 0.96529 0.99622 1.20276 0.90457 0.90411 1.05539 0.87652 0.87942 0.88392 0.88189 0.85798 0.74856 0.90547 0.93349 0.90037 0.92766 0.92474 0.91019 0.92047 0.93654 0.98090 0.93358 0.94393 0.88746 0.91545 0.87910 0.86869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.29 71.24 0.73 -0.18 16 2 C 0.18 4.60 8.07 138.14 1.11 5.71 16 3 N -0.34 -11.36 12.23 -50.46 -0.62 -11.98 16 4 N -0.33 -11.61 12.21 -50.27 -0.61 -12.22 16 5 C 0.18 5.15 7.75 138.14 1.07 6.22 16 6 N -0.47 -11.69 3.11 -504.66 -1.57 -13.27 16 7 C 0.13 2.72 5.53 86.53 0.48 3.20 16 8 C -0.11 -2.60 2.53 -11.39 -0.03 -2.62 16 9 H 0.12 2.50 8.12 -2.38 -0.02 2.48 16 10 C 0.52 15.06 7.07 87.66 0.62 15.68 16 11 O -0.58 -19.29 15.78 -3.01 -0.05 -19.34 16 12 N -0.69 -21.17 3.82 -463.06 -1.77 -22.94 16 13 C 0.14 4.34 4.42 86.38 0.38 4.72 16 14 C 0.16 5.25 3.00 44.97 0.14 5.39 16 15 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 16 C -0.12 -3.39 5.37 30.67 0.16 -3.22 16 17 C -0.10 -2.81 5.88 30.62 0.18 -2.63 16 18 C -0.14 -4.50 6.08 30.67 0.19 -4.32 16 19 C 0.18 7.42 5.32 86.37 0.46 7.88 16 20 N -0.60 -24.55 2.98 -675.23 -2.01 -26.57 16 21 C -0.24 -10.56 7.12 84.03 0.60 -9.96 16 22 H 0.07 3.11 5.72 -2.91 -0.02 3.09 16 23 C -0.02 -1.14 4.83 84.86 0.41 -0.73 16 24 N -0.92 -47.01 11.37 21.65 0.25 -46.77 16 25 Si 0.92 39.55 29.24 68.60 2.01 41.55 16 26 H -0.25 -9.91 6.92 99.48 0.69 -9.23 16 27 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 29 C -0.12 -3.06 5.24 30.81 0.16 -2.90 16 30 C -0.03 -0.70 6.34 30.05 0.19 -0.51 16 31 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.02 8.03 -2.39 -0.02 1.00 16 34 H 0.10 2.22 7.69 -2.38 -0.02 2.21 16 35 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.41 13.54 7.37 -92.71 -0.68 12.86 16 37 H 0.08 2.14 8.13 -2.39 -0.02 2.12 16 38 H 0.05 1.71 7.34 -2.38 -0.02 1.69 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.00 0.04 8.14 -2.39 -0.02 0.03 16 46 H 0.05 2.36 6.14 -2.39 -0.01 2.35 16 47 H 0.25 12.70 8.31 -92.71 -0.77 11.93 16 48 H 0.09 2.90 7.45 -2.39 -0.02 2.88 16 49 H 0.07 1.87 8.12 -2.39 -0.02 1.85 16 50 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 51 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -62.76 395.01 2.71 -60.06 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.23 Total: 29.74 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 6.86 Total: 21.72 kcal Atomic # 7 Polarization: -127.39 SS G_CDS: -6.34 Total: -133.73 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.05 Total: -19.34 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.01 Total: 41.55 kcal Total: -62.76 2.71 -60.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024810186.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.723 kcal (2) G-P(sol) polarization free energy of solvation -62.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds