Wall clock time and date at job start Wed Apr 1 2020 05:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36593 * 126.58110 * 2 1 4 4 C 1.47524 * 125.76948 * 359.97438 * 3 2 1 5 5 O 1.21595 * 120.00225 * 355.11052 * 4 3 2 6 6 N 1.34784 * 120.00055 * 175.10799 * 4 3 2 7 7 C 1.46930 * 120.62863 * 5.55592 * 6 4 3 8 8 C 1.53190 * 108.77300 * 126.36796 * 7 6 4 9 9 C 1.53035 * 109.31554 * 54.63101 * 8 7 6 10 10 C 1.53038 * 109.54190 * 298.63915 * 9 8 7 11 11 C 1.46924 * 120.62929 * 185.27505 * 6 4 3 12 12 H 1.09005 * 109.58492 * 113.85012 * 11 6 4 13 13 C 1.52995 * 109.58958 * 353.42258 * 11 6 4 14 14 H 1.08999 * 109.87604 * 51.79375 * 13 11 6 15 15 C 1.54333 * 109.88120 * 290.62324 * 13 11 6 16 16 C 1.55150 * 102.94111 * 218.38851 * 15 13 11 17 17 C 1.54909 * 101.58311 * 35.50491 * 16 15 13 18 18 N 1.47013 * 109.88295 * 172.81594 * 13 11 6 19 19 C 1.36932 * 125.64965 * 298.38728 * 18 13 11 20 20 H 1.07998 * 120.00183 * 353.22949 * 19 18 13 21 21 C 1.38819 * 120.00431 * 173.22303 * 19 18 13 22 22 N 1.31624 * 119.99721 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00401 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46798 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47047 * 120.00085 * 23 21 19 26 26 H 1.48501 * 109.47334 * 240.00550 * 23 21 19 27 27 N 1.34406 * 108.45966 * 179.73235 * 3 2 1 28 28 N 1.28760 * 109.52274 * 0.26489 * 27 3 2 29 29 N 1.34815 * 126.58230 * 180.18467 * 2 1 3 30 30 C 1.46502 * 126.59073 * 0.02562 * 29 2 1 31 31 H 1.09007 * 109.47199 * 89.99891 * 1 2 3 32 32 H 1.08997 * 109.47457 * 210.00159 * 1 2 3 33 33 H 1.08999 * 109.47578 * 329.99812 * 1 2 3 34 34 H 1.08997 * 109.58383 * 246.15356 * 7 6 4 35 35 H 1.09000 * 109.58706 * 6.58407 * 7 6 4 36 36 H 1.09000 * 109.49714 * 174.58836 * 8 7 6 37 37 H 1.09008 * 109.49944 * 294.68081 * 8 7 6 38 38 H 1.09005 * 109.45714 * 58.65461 * 9 8 7 39 39 H 1.09000 * 109.46244 * 178.62339 * 9 8 7 40 40 H 1.09002 * 109.50040 * 181.31691 * 10 9 8 41 41 H 1.09005 * 109.49622 * 301.37528 * 10 9 8 42 42 H 1.09001 * 110.72102 * 336.75497 * 15 13 11 43 43 H 1.09004 * 110.72052 * 100.02419 * 15 13 11 44 44 H 1.09002 * 111.00561 * 277.42494 * 16 15 13 45 45 H 1.09006 * 111.00537 * 153.57398 * 16 15 13 46 46 H 1.09004 * 110.36594 * 204.15430 * 17 16 15 47 47 H 1.09000 * 110.37097 * 81.82553 * 17 16 15 48 48 H 0.96995 * 119.99759 * 179.97438 * 22 21 19 49 49 H 1.09009 * 109.46800 * 270.27957 * 30 29 2 50 50 H 1.08990 * 109.47702 * 30.28203 * 30 29 2 51 51 H 1.09003 * 109.46876 * 150.28841 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6896 2.7639 -0.0908 6 7 2.7776 3.4975 0.0991 7 6 4.2174 3.2048 0.0866 8 6 4.8833 4.0517 -1.0024 9 6 4.5436 5.5265 -0.7752 10 6 3.0289 5.7233 -0.8690 11 6 2.3419 4.8958 0.2159 12 1 2.6174 5.2836 1.1967 13 6 0.8247 4.9770 0.0368 14 1 0.3341 4.2711 0.7069 15 6 0.4515 4.6620 -1.4272 16 6 -0.7046 5.6565 -1.7128 17 6 -0.2575 6.8956 -0.8976 18 7 0.3600 6.3424 0.3215 19 6 0.4812 6.9930 1.5203 20 1 0.8514 6.4646 2.3864 21 6 0.1284 8.3317 1.6224 22 7 -0.3232 8.9756 0.5670 23 14 0.2944 9.2193 3.2576 24 1 0.8218 8.2797 4.2796 25 1 1.2300 10.3626 3.1074 26 1 -1.0360 9.7213 3.6858 27 7 3.5984 0.6788 0.0060 28 7 3.6299 -0.6084 0.0040 29 7 2.3104 -1.0826 -0.0035 30 6 1.8863 -2.4848 -0.0085 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 4.6488 3.4518 1.0566 35 1 4.3734 2.1473 -0.1264 36 1 5.9640 3.9163 -0.9587 37 1 4.5165 3.7404 -1.9806 38 1 4.8888 5.8305 0.2131 39 1 5.0363 6.1338 -1.5345 40 1 2.7896 6.7776 -0.7303 41 1 2.6795 5.3968 -1.8486 42 1 1.2959 4.8516 -2.0899 43 1 0.1073 3.6323 -1.5245 44 1 -1.6541 5.2681 -1.3443 45 1 -0.7658 5.8896 -2.7759 46 1 -1.1192 7.5116 -0.6404 47 1 0.4714 7.4778 -1.4614 48 1 -0.5701 9.9109 0.6384 49 1 1.7760 -2.8347 1.0180 50 1 0.9320 -2.5740 -0.5273 51 1 2.6357 -3.0892 -0.5197 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025215761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:17 Heat of formation + Delta-G solvation = 116.597970 kcal Electronic energy + Delta-G solvation = -33273.129820 eV Core-core repulsion = 29211.631859 eV Total energy + Delta-G solvation = -4061.497962 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.34501 -41.63015 -38.76806 -38.10022 -35.94166 -34.54496 -33.74903 -33.32256 -32.38353 -31.10438 -29.20865 -28.54251 -28.24391 -26.53048 -25.90842 -24.46649 -23.89362 -22.32923 -22.15121 -21.50872 -21.08080 -19.79301 -18.92060 -17.96932 -17.42376 -17.15232 -16.93037 -16.52104 -16.28237 -16.10650 -15.68702 -15.57586 -15.15098 -14.98560 -14.55833 -14.43898 -14.26489 -14.19526 -14.09299 -13.90348 -13.78116 -13.47523 -13.26482 -13.20970 -12.98279 -12.86067 -12.71405 -12.66802 -12.49963 -12.29184 -11.98397 -11.92693 -11.81619 -11.65166 -11.38432 -11.16291 -11.10044 -11.05718 -10.86093 -10.64336 -10.13563 -10.05315 -9.34364 -8.66865 -7.74256 -5.11286 0.16003 0.63629 1.16787 1.45802 1.46126 1.56356 2.03306 2.29433 2.54351 3.15923 3.36910 3.44416 3.68215 3.72772 3.83568 3.94915 3.96718 4.05564 4.16772 4.28459 4.34584 4.37231 4.40693 4.45191 4.49399 4.58529 4.66801 4.68043 4.70145 4.74691 4.83336 4.88025 4.95022 5.01704 5.08901 5.10840 5.12470 5.21363 5.27867 5.33493 5.36796 5.40500 5.52246 5.55661 5.59180 5.72787 5.76763 5.88228 5.93941 6.32879 6.55024 6.91665 7.18308 7.30541 7.89928 8.56589 9.32548 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.003577 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.359109 B = 7826.819918 C = 8387.124671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.131 3.869 3 C -0.121 4.121 4 C 0.582 3.418 5 O -0.528 6.528 6 N -0.588 5.588 7 C 0.069 3.931 8 C -0.119 4.119 9 C -0.116 4.116 10 C -0.115 4.115 11 C 0.147 3.853 12 H 0.042 0.958 13 C 0.165 3.835 14 H 0.058 0.942 15 C -0.108 4.108 16 C -0.138 4.138 17 C 0.175 3.825 18 N -0.613 5.613 19 C -0.222 4.222 20 H 0.070 0.930 21 C -0.065 4.065 22 N -0.948 5.948 23 Si 0.969 3.031 24 H -0.271 1.271 25 H -0.293 1.293 26 H -0.293 1.293 27 N -0.222 5.222 28 N -0.092 5.092 29 N -0.351 5.351 30 C 0.073 3.927 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.145 0.855 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.048 0.952 47 H -0.012 1.012 48 H 0.244 0.756 49 H 0.107 0.893 50 H 0.126 0.874 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.909 -25.262 -4.816 26.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.008 4.008 3 C -0.261 4.261 4 C 0.370 3.630 5 O -0.406 6.406 6 N -0.320 5.320 7 C -0.054 4.054 8 C -0.157 4.157 9 C -0.154 4.154 10 C -0.153 4.153 11 C 0.042 3.958 12 H 0.060 0.940 13 C 0.059 3.941 14 H 0.075 0.925 15 C -0.145 4.145 16 C -0.177 4.177 17 C 0.049 3.951 18 N -0.338 5.338 19 C -0.352 4.352 20 H 0.088 0.912 21 C -0.257 4.257 22 N -0.598 5.598 23 Si 0.799 3.201 24 H -0.195 1.195 25 H -0.220 1.220 26 H -0.220 1.220 27 N -0.093 5.093 28 N -0.071 5.071 29 N -0.138 5.138 30 C -0.066 4.066 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.162 0.838 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.067 0.933 47 H 0.006 0.994 48 H 0.054 0.946 49 H 0.125 0.875 50 H 0.144 0.856 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.747 -25.436 -4.746 26.740 hybrid contribution -0.702 1.587 1.031 2.019 sum 6.044 -23.848 -3.715 24.881 Atomic orbital electron populations 1.20786 0.82523 1.06005 1.05675 1.22231 0.97284 0.85709 0.95551 1.21312 0.89493 0.95430 1.19831 1.17131 0.85519 0.82912 0.77463 1.90746 1.17179 1.82186 1.50528 1.47992 1.07433 1.05575 1.70979 1.22882 0.78267 1.05127 0.99085 1.21819 1.01465 0.93844 0.98587 1.21537 0.94571 0.97460 1.01842 1.21752 0.95997 0.98956 0.98632 1.21601 0.97151 0.79585 0.97489 0.93962 1.21700 0.90244 0.85114 0.97001 0.92469 1.22970 0.97320 0.99757 0.94447 1.22904 0.98292 0.97113 0.99364 1.21332 0.95502 0.92508 0.85729 1.44980 1.67231 1.13081 1.08504 1.19286 1.35915 0.92490 0.87508 0.91203 1.25510 1.02627 0.97206 1.00392 1.70155 1.51268 1.09352 1.29001 0.85130 0.76824 0.78374 0.79796 1.19528 1.22016 1.21982 1.74004 1.19198 1.04183 1.11961 1.81868 0.98026 1.03510 1.23698 1.50542 1.05152 1.09241 1.48823 1.22707 1.04171 0.73211 1.06519 0.87600 0.87182 0.89226 0.92447 0.83835 0.88572 0.91975 0.92628 0.90925 0.93673 0.91469 0.92185 0.88502 0.92614 0.90768 0.93323 0.99425 0.94634 0.87496 0.85607 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 9.33 71.23 0.66 -0.63 16 2 C 0.13 2.64 7.02 41.71 0.29 2.93 16 3 C -0.12 -3.32 6.77 40.82 0.28 -3.05 16 4 C 0.58 19.24 7.29 86.69 0.63 19.87 16 5 O -0.53 -18.96 7.65 -4.02 -0.03 -18.99 16 6 N -0.59 -19.97 2.96 -799.55 -2.37 -22.34 16 7 C 0.07 1.96 6.23 86.36 0.54 2.50 16 8 C -0.12 -3.00 6.08 30.67 0.19 -2.81 16 9 C -0.12 -3.47 5.88 30.62 0.18 -3.29 16 10 C -0.12 -4.38 4.94 30.53 0.15 -4.23 16 11 C 0.15 5.95 2.70 44.83 0.12 6.07 16 12 H 0.04 1.94 7.79 -2.38 -0.02 1.93 16 13 C 0.17 7.46 2.28 45.34 0.10 7.56 16 14 H 0.06 2.83 5.77 -16.95 -0.10 2.73 16 15 C -0.11 -4.28 5.17 31.78 0.16 -4.12 16 16 C -0.14 -5.80 7.08 31.98 0.23 -5.57 16 17 C 0.17 9.20 5.62 86.85 0.49 9.69 16 18 N -0.61 -33.01 2.83 -668.25 -1.89 -34.90 16 19 C -0.22 -12.96 9.70 84.04 0.82 -12.14 16 20 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 21 C -0.06 -3.81 5.48 84.86 0.47 -3.34 16 22 N -0.95 -58.52 10.27 21.65 0.22 -58.30 16 23 Si 0.97 47.63 29.55 68.60 2.03 49.66 16 24 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 25 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 27 N -0.22 -6.01 8.63 -49.99 -0.43 -6.44 16 28 N -0.09 -2.18 13.78 37.02 0.51 -1.67 16 29 N -0.35 -5.80 4.03 -355.10 -1.43 -7.23 16 30 C 0.07 0.31 11.17 127.77 1.43 1.73 16 31 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.11 0.71 7.84 -2.39 -0.02 0.69 16 33 H 0.09 1.84 6.54 -2.39 -0.02 1.82 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.15 3.95 3.76 -90.57 -0.34 3.61 16 36 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 40 H 0.04 2.06 8.01 -2.39 -0.02 2.04 16 41 H 0.07 2.50 5.44 -2.38 -0.01 2.49 16 42 H 0.06 2.31 5.10 -2.39 -0.01 2.30 16 43 H 0.10 3.66 5.62 -6.36 -0.04 3.62 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 46 H 0.05 2.89 6.35 -2.39 -0.02 2.88 16 47 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 48 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 49 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 50 H 0.13 -0.15 7.78 -2.39 -0.02 -0.17 16 51 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -75.73 379.52 3.85 -71.88 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.51 Total: 17.15 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 6.73 Total: 11.19 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -5.39 Total: -130.88 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.03 Total: -18.99 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -75.73 3.85 -71.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025215761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.478 kcal (2) G-P(sol) polarization free energy of solvation -75.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds