Wall clock time and date at job start Wed Apr 1 2020 05:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36598 * 126.58261 * 2 1 4 4 C 1.47527 * 125.76844 * 0.02562 * 3 2 1 5 5 O 1.21599 * 119.99991 * 357.39936 * 4 3 2 6 6 N 1.34774 * 119.99502 * 177.67606 * 4 3 2 7 7 C 1.46928 * 120.63382 * 353.31571 * 6 4 3 8 8 C 1.53622 * 108.54254 * 126.37129 * 7 6 4 9 9 C 1.53036 * 109.24495 * 54.85514 * 8 7 6 10 10 C 1.53043 * 109.53720 * 298.51315 * 9 8 7 11 11 C 1.46928 * 120.62781 * 173.59693 * 6 4 3 12 12 H 1.08994 * 109.58901 * 113.79430 * 11 6 4 13 13 C 1.53005 * 109.58555 * 353.37201 * 11 6 4 14 14 H 1.08998 * 109.87460 * 46.36298 * 13 11 6 15 15 C 1.54323 * 109.88001 * 167.37847 * 13 11 6 16 16 C 1.55163 * 102.93958 * 141.60978 * 15 13 11 17 17 C 1.54902 * 101.58156 * 324.49513 * 16 15 13 18 18 N 1.47024 * 109.88128 * 285.18646 * 13 11 6 19 19 C 1.36935 * 125.64845 * 61.61957 * 18 13 11 20 20 H 1.07998 * 120.00353 * 357.54008 * 19 18 13 21 21 C 1.38817 * 119.99560 * 177.53847 * 19 18 13 22 22 N 1.31609 * 120.00274 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99663 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47158 * 60.00101 * 23 21 19 25 25 H 1.48500 * 109.47290 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47121 * 300.00331 * 23 21 19 27 27 N 1.34402 * 108.45791 * 180.26813 * 3 2 1 28 28 N 1.28762 * 109.51846 * 359.58821 * 27 3 2 29 29 N 1.34815 * 126.57884 * 180.02562 * 2 1 3 30 30 C 1.46504 * 126.59002 * 359.97438 * 29 2 1 31 31 H 1.08993 * 109.47684 * 89.99391 * 1 2 3 32 32 H 1.08996 * 109.47041 * 209.99682 * 1 2 3 33 33 H 1.09008 * 109.47007 * 329.99447 * 1 2 3 34 34 H 1.09000 * 109.58121 * 246.20453 * 7 6 4 35 35 H 1.08999 * 109.58258 * 6.62747 * 7 6 4 36 36 H 1.09006 * 109.63344 * 294.86357 * 8 7 6 37 37 H 1.08998 * 109.45784 * 174.74587 * 8 7 6 38 38 H 1.08995 * 109.46252 * 178.49370 * 9 8 7 39 39 H 1.08999 * 109.44879 * 58.52056 * 9 8 7 40 40 H 1.09008 * 109.49640 * 301.41000 * 10 9 8 41 41 H 1.09002 * 109.49376 * 181.31738 * 10 9 8 42 42 H 1.08996 * 110.72093 * 259.97068 * 15 13 11 43 43 H 1.09000 * 110.72259 * 23.07211 * 15 13 11 44 44 H 1.09003 * 111.00152 * 82.57438 * 16 15 13 45 45 H 1.09005 * 111.00009 * 206.42212 * 16 15 13 46 46 H 1.09000 * 110.36531 * 155.85180 * 17 16 15 47 47 H 1.08998 * 110.36925 * 278.06199 * 17 16 15 48 48 H 0.97007 * 120.00194 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.46903 * 90.00924 * 30 29 2 50 50 H 1.09007 * 109.46600 * 210.00133 * 30 29 2 51 51 H 1.08990 * 109.47531 * 330.00226 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0005 5 8 0.6870 2.7632 -0.0468 6 7 2.7810 3.4984 0.0478 7 6 4.2066 3.2035 0.2460 8 6 5.0054 3.8723 -0.8830 9 6 4.6721 5.3654 -0.9206 10 6 3.1810 5.5498 -1.2114 11 6 2.3622 4.8998 -0.0917 12 1 2.5389 5.4289 0.8446 13 6 0.8744 4.9578 -0.4442 14 1 0.3132 4.2863 0.2056 15 6 0.3530 6.4013 -0.2832 16 6 -0.6261 6.5523 -1.4775 17 6 0.0871 5.7192 -2.5715 18 7 0.6786 4.5772 -1.8507 19 6 0.9938 3.3633 -2.4003 20 1 1.4623 2.6016 -1.7948 21 6 0.7110 3.1117 -3.7359 22 7 0.1405 4.0400 -4.4740 23 14 1.1404 1.4554 -4.4855 24 1 0.4191 0.3807 -3.7574 25 1 0.7397 1.4403 -5.9153 26 1 2.6042 1.2287 -4.3797 27 7 3.5984 0.6788 -0.0060 28 7 3.6298 -0.6084 -0.0010 29 7 2.3104 -1.0826 -0.0005 30 6 1.8862 -2.4849 -0.0006 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5140 34 1 4.5306 3.5971 1.2094 35 1 4.3640 2.1253 0.2178 36 1 4.7421 3.4166 -1.8376 37 1 6.0719 3.7420 -0.6997 38 1 5.2571 5.8485 -1.7032 39 1 4.9125 5.8153 0.0427 40 1 2.9348 5.0784 -2.1630 41 1 2.9489 6.6137 -1.2612 42 1 -0.1735 6.5178 0.6641 43 1 1.1711 7.1177 -0.3588 44 1 -1.6020 6.1296 -1.2384 45 1 -0.7172 7.5960 -1.7784 46 1 -0.6327 5.3692 -3.3113 47 1 0.8661 6.3114 -3.0518 48 1 -0.0574 3.8641 -5.4072 49 1 1.7808 -2.8325 -1.0283 50 1 2.6331 -3.0904 0.5129 51 1 0.9294 -2.5751 0.5135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025215762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:23 Heat of formation + Delta-G solvation = 155.185192 kcal Electronic energy + Delta-G solvation = -34610.923820 eV Core-core repulsion = 30551.099126 eV Total energy + Delta-G solvation = -4059.824694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.11653 -40.04107 -36.98123 -36.44731 -34.82740 -32.44891 -32.19984 -32.07278 -30.78213 -28.91581 -28.02139 -27.43777 -26.92961 -24.84478 -23.97709 -22.96906 -22.36597 -21.05629 -20.22289 -19.96606 -19.28414 -18.62881 -17.11556 -16.61482 -16.26048 -15.73768 -15.48132 -14.96404 -14.46826 -14.30748 -14.00090 -13.91194 -13.59215 -13.57980 -13.37883 -13.21177 -12.91019 -12.83623 -12.76508 -12.53629 -12.26527 -11.91528 -11.82415 -11.62498 -11.53487 -11.22512 -10.99389 -10.90654 -10.74854 -10.67561 -10.48775 -10.16203 -10.08128 -9.96891 -9.91063 -9.70868 -9.45792 -9.44832 -8.97624 -8.79054 -8.44931 -7.98859 -7.77398 -6.43535 -5.38690 -2.74847 1.33933 2.05844 2.15832 3.42200 3.50050 3.50387 3.56759 3.94431 4.38289 4.41549 4.66544 4.77805 4.84438 4.94108 5.11567 5.30572 5.38427 5.44849 5.53958 5.62236 5.66007 5.69419 5.75773 5.85380 5.87449 5.91097 5.93092 5.94408 6.12098 6.14654 6.17639 6.24426 6.38272 6.46085 6.53300 6.58329 6.59625 6.64824 6.74655 6.75796 6.84337 6.90812 6.97076 7.23327 7.41626 7.68574 7.76928 7.92785 8.08930 8.11971 8.24522 8.63700 9.00237 9.49898 10.12449 10.78969 11.64341 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010158 B = 0.006107 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.726786 B = 4583.606423 C = 5550.101261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.123 3.877 3 C -0.092 4.092 4 C 0.610 3.390 5 O -0.492 6.492 6 N -0.586 5.586 7 C 0.071 3.929 8 C -0.127 4.127 9 C -0.118 4.118 10 C -0.124 4.124 11 C 0.142 3.858 12 H 0.052 0.948 13 C 0.123 3.877 14 H 0.113 0.887 15 C -0.131 4.131 16 C -0.143 4.143 17 C 0.149 3.851 18 N -0.576 5.576 19 C -0.176 4.176 20 H 0.086 0.914 21 C -0.025 4.025 22 N -0.929 5.929 23 Si 0.891 3.109 24 H -0.292 1.292 25 H -0.292 1.292 26 H -0.292 1.292 27 N -0.206 5.206 28 N -0.083 5.083 29 N -0.368 5.368 30 C 0.089 3.911 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.051 0.949 35 H 0.137 0.863 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.108 0.892 47 H 0.004 0.996 48 H 0.245 0.755 49 H 0.086 0.914 50 H 0.098 0.902 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.336 -6.313 11.901 13.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.014 4.014 3 C -0.231 4.231 4 C 0.397 3.603 5 O -0.368 6.368 6 N -0.318 5.318 7 C -0.053 4.053 8 C -0.166 4.166 9 C -0.156 4.156 10 C -0.162 4.162 11 C 0.037 3.963 12 H 0.070 0.930 13 C 0.016 3.984 14 H 0.129 0.871 15 C -0.170 4.170 16 C -0.182 4.182 17 C 0.024 3.976 18 N -0.298 5.298 19 C -0.305 4.305 20 H 0.103 0.897 21 C -0.219 4.219 22 N -0.581 5.581 23 Si 0.724 3.276 24 H -0.220 1.220 25 H -0.218 1.218 26 H -0.220 1.220 27 N -0.077 5.077 28 N -0.061 5.061 29 N -0.155 5.155 30 C -0.052 4.052 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.069 0.931 35 H 0.154 0.846 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.125 0.875 47 H 0.022 0.978 48 H 0.056 0.944 49 H 0.105 0.895 50 H 0.116 0.884 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.159 -6.763 11.652 14.100 hybrid contribution -0.294 -0.700 -0.747 1.065 sum 3.865 -7.463 10.905 13.768 Atomic orbital electron populations 1.20727 0.84583 1.04726 1.05201 1.21932 0.96329 0.86157 0.96966 1.21722 0.88343 0.96508 1.16558 1.16459 0.85762 0.81847 0.76274 1.90723 1.16190 1.80249 1.49630 1.47620 1.06802 1.06172 1.71171 1.22765 0.80113 1.05619 0.96802 1.21873 0.98697 0.96025 0.99956 1.21544 0.97663 0.96007 1.00346 1.21895 0.92581 0.99957 1.01792 1.22034 0.98578 0.79339 0.96315 0.92989 1.22381 0.91289 0.93602 0.91086 0.87053 1.22684 0.98649 0.97779 0.97872 1.22947 0.98413 0.99048 0.97749 1.21985 0.96232 0.86548 0.92869 1.44285 1.71961 1.10807 1.02790 1.19453 1.28824 0.89987 0.92281 0.89660 1.24663 1.03186 0.97115 0.96890 1.69726 1.49993 1.31645 1.06725 0.86458 0.77709 0.84957 0.78487 1.21972 1.21849 1.21974 1.74001 1.19142 1.03345 1.11259 1.81901 0.96264 1.04181 1.23737 1.50157 1.06491 1.07575 1.51241 1.22099 1.02139 0.76431 1.04557 0.88574 0.91378 0.86746 0.93063 0.84632 0.91365 0.92063 0.92765 0.93168 0.88378 0.92405 0.92919 0.92811 0.92571 0.93246 0.87483 0.97834 0.94411 0.89514 0.88360 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 9.55 36.01 0.34 -0.93 16 2 C 0.12 1.97 7.02 -81.87 -0.57 1.39 16 3 C -0.09 -1.72 6.56 -83.55 -0.55 -2.27 16 4 C 0.61 12.37 4.64 -12.47 -0.06 12.31 16 5 O -0.49 -10.76 8.37 5.28 0.04 -10.72 16 6 N -0.59 -11.19 2.82 -166.18 -0.47 -11.66 16 7 C 0.07 1.19 6.36 -3.49 -0.02 1.17 16 8 C -0.13 -2.08 6.10 -26.39 -0.16 -2.24 16 9 C -0.12 -1.89 5.88 -26.69 -0.16 -2.05 16 10 C -0.12 -2.37 4.94 -26.61 -0.13 -2.50 16 11 C 0.14 2.70 2.52 -67.60 -0.17 2.53 16 12 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 13 C 0.12 2.60 2.32 -66.95 -0.16 2.44 16 14 H 0.11 2.54 4.91 -56.82 -0.28 2.26 16 15 C -0.13 -2.42 6.33 -24.89 -0.16 -2.58 16 16 C -0.14 -2.87 7.08 -24.58 -0.17 -3.04 16 17 C 0.15 3.66 5.98 -2.53 -0.02 3.65 16 18 N -0.58 -14.27 1.92 -162.57 -0.31 -14.59 16 19 C -0.18 -4.78 7.49 -15.06 -0.11 -4.89 16 20 H 0.09 2.27 3.41 -52.49 -0.18 2.09 16 21 C -0.03 -0.73 5.49 -17.43 -0.10 -0.82 16 22 N -0.93 -27.61 10.05 55.49 0.56 -27.05 16 23 Si 0.89 23.14 29.55 -169.99 -5.02 18.12 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 26 H -0.29 -7.75 7.11 56.52 0.40 -7.34 16 27 N -0.21 -3.74 8.66 32.85 0.28 -3.45 16 28 N -0.08 -1.37 13.78 60.35 0.83 -0.54 16 29 N -0.37 -5.16 4.03 -63.59 -0.26 -5.41 16 30 C 0.09 0.72 11.33 59.85 0.68 1.39 16 31 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.07 0.63 7.18 -51.93 -0.37 0.25 16 33 H 0.11 1.70 6.49 -51.92 -0.34 1.37 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.14 2.36 3.61 -128.31 -0.46 1.89 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 2.34 6.44 -51.92 -0.33 2.00 16 41 H 0.06 1.06 7.05 -51.93 -0.37 0.70 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.94 6.72 -51.93 -0.35 0.59 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.11 3.01 5.72 -51.93 -0.30 2.72 16 47 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 48 H 0.24 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.09 0.51 7.16 -51.93 -0.37 0.14 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -33.00 372.91 -8.21 -41.21 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.98 Total: 4.91 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.51 Total: 3.57 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: 0.64 Total: -62.71 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.04 Total: -10.72 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.00 -8.21 -41.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025215762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.393 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds