Wall clock time and date at job start Wed Apr 1 2020 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36598 * 126.58261 * 2 1 4 4 C 1.47527 * 125.76844 * 0.02562 * 3 2 1 5 5 O 1.21599 * 119.99991 * 357.39936 * 4 3 2 6 6 N 1.34774 * 119.99502 * 177.67606 * 4 3 2 7 7 C 1.46928 * 120.63382 * 353.31571 * 6 4 3 8 8 C 1.53622 * 108.54254 * 126.37129 * 7 6 4 9 9 C 1.53036 * 109.24495 * 54.85514 * 8 7 6 10 10 C 1.53043 * 109.53720 * 298.51315 * 9 8 7 11 11 C 1.46928 * 120.62781 * 173.59693 * 6 4 3 12 12 H 1.08994 * 109.58901 * 113.79430 * 11 6 4 13 13 C 1.53005 * 109.58555 * 353.37201 * 11 6 4 14 14 H 1.08998 * 109.87460 * 46.36298 * 13 11 6 15 15 C 1.54323 * 109.88001 * 167.37847 * 13 11 6 16 16 C 1.55163 * 102.93958 * 141.60978 * 15 13 11 17 17 C 1.54902 * 101.58156 * 324.49513 * 16 15 13 18 18 N 1.47024 * 109.88128 * 285.18646 * 13 11 6 19 19 C 1.36935 * 125.64845 * 61.61957 * 18 13 11 20 20 H 1.07998 * 120.00353 * 357.54008 * 19 18 13 21 21 C 1.38817 * 119.99560 * 177.53847 * 19 18 13 22 22 N 1.31609 * 120.00274 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99663 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47158 * 60.00101 * 23 21 19 25 25 H 1.48500 * 109.47290 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47121 * 300.00331 * 23 21 19 27 27 N 1.34402 * 108.45791 * 180.26813 * 3 2 1 28 28 N 1.28762 * 109.51846 * 359.58821 * 27 3 2 29 29 N 1.34815 * 126.57884 * 180.02562 * 2 1 3 30 30 C 1.46504 * 126.59002 * 359.97438 * 29 2 1 31 31 H 1.08993 * 109.47684 * 89.99391 * 1 2 3 32 32 H 1.08996 * 109.47041 * 209.99682 * 1 2 3 33 33 H 1.09008 * 109.47007 * 329.99447 * 1 2 3 34 34 H 1.09000 * 109.58121 * 246.20453 * 7 6 4 35 35 H 1.08999 * 109.58258 * 6.62747 * 7 6 4 36 36 H 1.09006 * 109.63344 * 294.86357 * 8 7 6 37 37 H 1.08998 * 109.45784 * 174.74587 * 8 7 6 38 38 H 1.08995 * 109.46252 * 178.49370 * 9 8 7 39 39 H 1.08999 * 109.44879 * 58.52056 * 9 8 7 40 40 H 1.09008 * 109.49640 * 301.41000 * 10 9 8 41 41 H 1.09002 * 109.49376 * 181.31738 * 10 9 8 42 42 H 1.08996 * 110.72093 * 259.97068 * 15 13 11 43 43 H 1.09000 * 110.72259 * 23.07211 * 15 13 11 44 44 H 1.09003 * 111.00152 * 82.57438 * 16 15 13 45 45 H 1.09005 * 111.00009 * 206.42212 * 16 15 13 46 46 H 1.09000 * 110.36531 * 155.85180 * 17 16 15 47 47 H 1.08998 * 110.36925 * 278.06199 * 17 16 15 48 48 H 0.97007 * 120.00194 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.46903 * 90.00924 * 30 29 2 50 50 H 1.09007 * 109.46600 * 210.00133 * 30 29 2 51 51 H 1.08990 * 109.47531 * 330.00226 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0005 5 8 0.6870 2.7632 -0.0468 6 7 2.7810 3.4984 0.0478 7 6 4.2066 3.2035 0.2460 8 6 5.0054 3.8723 -0.8830 9 6 4.6721 5.3654 -0.9206 10 6 3.1810 5.5498 -1.2114 11 6 2.3622 4.8998 -0.0917 12 1 2.5389 5.4289 0.8446 13 6 0.8744 4.9578 -0.4442 14 1 0.3132 4.2863 0.2056 15 6 0.3530 6.4013 -0.2832 16 6 -0.6261 6.5523 -1.4775 17 6 0.0871 5.7192 -2.5715 18 7 0.6786 4.5772 -1.8507 19 6 0.9938 3.3633 -2.4003 20 1 1.4623 2.6016 -1.7948 21 6 0.7110 3.1117 -3.7359 22 7 0.1405 4.0400 -4.4740 23 14 1.1404 1.4554 -4.4855 24 1 0.4191 0.3807 -3.7574 25 1 0.7397 1.4403 -5.9153 26 1 2.6042 1.2287 -4.3797 27 7 3.5984 0.6788 -0.0060 28 7 3.6298 -0.6084 -0.0010 29 7 2.3104 -1.0826 -0.0005 30 6 1.8862 -2.4849 -0.0006 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5140 34 1 4.5306 3.5971 1.2094 35 1 4.3640 2.1253 0.2178 36 1 4.7421 3.4166 -1.8376 37 1 6.0719 3.7420 -0.6997 38 1 5.2571 5.8485 -1.7032 39 1 4.9125 5.8153 0.0427 40 1 2.9348 5.0784 -2.1630 41 1 2.9489 6.6137 -1.2612 42 1 -0.1735 6.5178 0.6641 43 1 1.1711 7.1177 -0.3588 44 1 -1.6020 6.1296 -1.2384 45 1 -0.7172 7.5960 -1.7784 46 1 -0.6327 5.3692 -3.3113 47 1 0.8661 6.3114 -3.0518 48 1 -0.0574 3.8641 -5.4072 49 1 1.7808 -2.8325 -1.0283 50 1 2.6331 -3.0904 0.5129 51 1 0.9294 -2.5751 0.5135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025215762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:21 Heat of formation + Delta-G solvation = 134.056843 kcal Electronic energy + Delta-G solvation = -34611.840014 eV Core-core repulsion = 30551.099126 eV Total energy + Delta-G solvation = -4060.740888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.36658 -41.56972 -38.60267 -37.99720 -35.95126 -34.42025 -33.63323 -33.32829 -32.25242 -30.87324 -29.18632 -28.62916 -28.31250 -26.59073 -25.68265 -24.37635 -23.76008 -22.31793 -21.77539 -21.55844 -20.86987 -20.08903 -18.85381 -18.15901 -17.64620 -17.11884 -16.78034 -16.53087 -16.08795 -15.82713 -15.67224 -15.44660 -15.04135 -14.86886 -14.53666 -14.48049 -14.25214 -14.11428 -14.01847 -13.87557 -13.60620 -13.48195 -13.35943 -13.21741 -12.90945 -12.89529 -12.84845 -12.63902 -12.38264 -12.27909 -12.07513 -11.87821 -11.64542 -11.47977 -11.39328 -11.16351 -11.12867 -10.92753 -10.82955 -10.55988 -10.13439 -9.61574 -9.27624 -8.43075 -7.54389 -4.89307 0.13738 0.68069 1.14788 1.29591 1.34628 1.38885 2.14827 2.47694 2.56299 3.18274 3.41984 3.53845 3.66062 3.76333 3.89797 3.97879 4.07527 4.14645 4.25929 4.29198 4.31733 4.39171 4.45509 4.47348 4.51178 4.54767 4.60103 4.64635 4.70779 4.77281 4.81953 4.94564 4.98037 5.04969 5.08686 5.13628 5.20738 5.24280 5.26647 5.33151 5.36672 5.49110 5.53346 5.70002 5.74255 5.83164 5.86669 6.02488 6.15660 6.54347 6.65050 6.92368 7.35543 7.49248 8.07771 8.70885 9.47288 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010158 B = 0.006107 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.726786 B = 4583.606423 C = 5550.101261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.122 3.878 3 C -0.125 4.125 4 C 0.601 3.399 5 O -0.519 6.519 6 N -0.591 5.591 7 C 0.068 3.932 8 C -0.123 4.123 9 C -0.111 4.111 10 C -0.116 4.116 11 C 0.143 3.857 12 H 0.083 0.917 13 C 0.115 3.885 14 H 0.102 0.898 15 C -0.120 4.120 16 C -0.131 4.131 17 C 0.151 3.849 18 N -0.585 5.585 19 C -0.153 4.153 20 H 0.092 0.908 21 C -0.090 4.090 22 N -0.958 5.958 23 Si 0.933 3.067 24 H -0.277 1.277 25 H -0.299 1.299 26 H -0.304 1.304 27 N -0.220 5.220 28 N -0.094 5.094 29 N -0.353 5.353 30 C 0.072 3.928 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.133 0.867 36 H 0.027 0.973 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.074 0.926 46 H 0.069 0.931 47 H -0.021 1.021 48 H 0.232 0.768 49 H 0.097 0.903 50 H 0.119 0.881 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 -6.958 14.919 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.016 4.016 3 C -0.265 4.265 4 C 0.389 3.611 5 O -0.397 6.397 6 N -0.322 5.322 7 C -0.055 4.055 8 C -0.162 4.162 9 C -0.148 4.148 10 C -0.155 4.155 11 C 0.039 3.961 12 H 0.101 0.899 13 C 0.010 3.990 14 H 0.118 0.882 15 C -0.158 4.158 16 C -0.169 4.169 17 C 0.025 3.975 18 N -0.307 5.307 19 C -0.284 4.284 20 H 0.109 0.891 21 C -0.279 4.279 22 N -0.613 5.613 23 Si 0.767 3.233 24 H -0.204 1.204 25 H -0.226 1.226 26 H -0.232 1.232 27 N -0.091 5.091 28 N -0.073 5.073 29 N -0.140 5.140 30 C -0.066 4.066 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.149 0.851 36 H 0.046 0.954 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.087 0.913 47 H -0.003 1.003 48 H 0.043 0.957 49 H 0.115 0.885 50 H 0.138 0.862 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.934 -7.440 14.717 17.213 hybrid contribution -0.497 -0.588 -1.593 1.770 sum 4.437 -8.028 13.124 16.011 Atomic orbital electron populations 1.20730 0.83005 1.06463 1.04458 1.22236 0.97271 0.86127 0.96014 1.21720 0.89334 0.96513 1.18921 1.16775 0.85684 0.82792 0.75888 1.90697 1.17066 1.80966 1.50962 1.47782 1.07769 1.06043 1.70641 1.22916 0.78752 1.05782 0.98044 1.21846 1.00481 0.95965 0.97883 1.21504 0.95246 0.95921 1.02160 1.21740 0.95041 0.99623 0.99068 1.21964 0.96813 0.79891 0.97434 0.89884 1.22480 0.92951 0.95128 0.88471 0.88161 1.22662 0.98726 0.96148 0.98302 1.22790 0.98050 0.99408 0.96673 1.21741 0.94935 0.86983 0.93816 1.44456 1.71550 1.10101 1.04543 1.19788 1.25909 0.90727 0.91931 0.89071 1.25234 1.05306 0.99496 0.97912 1.69977 1.52470 1.32790 1.06089 0.85737 0.76709 0.83228 0.77647 1.20377 1.22572 1.23212 1.73969 1.19161 1.04044 1.11967 1.81783 0.97889 1.03737 1.23886 1.50516 1.05221 1.09184 1.49119 1.22704 1.04472 0.73347 1.06125 0.90298 0.86415 0.88333 0.90280 0.85067 0.95367 0.89028 0.92182 0.90048 0.93923 0.91754 0.89975 0.91210 0.92812 0.90782 0.91307 1.00272 0.95741 0.88451 0.86215 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.26 9.55 71.24 0.68 -1.58 16 2 C 0.12 3.76 7.02 41.72 0.29 4.05 16 3 C -0.13 -4.65 6.56 40.82 0.27 -4.38 16 4 C 0.60 24.41 4.64 86.69 0.40 24.81 16 5 O -0.52 -22.94 8.37 -4.03 -0.03 -22.97 16 6 N -0.59 -22.12 2.82 -797.92 -2.25 -24.37 16 7 C 0.07 2.17 6.36 86.51 0.55 2.72 16 8 C -0.12 -3.88 6.10 30.82 0.19 -3.70 16 9 C -0.11 -3.32 5.88 30.62 0.18 -3.14 16 10 C -0.12 -4.35 4.94 30.67 0.15 -4.20 16 11 C 0.14 5.23 2.52 44.97 0.11 5.34 16 12 H 0.08 2.57 8.10 -2.39 -0.02 2.55 16 13 C 0.12 4.78 2.32 45.34 0.11 4.88 16 14 H 0.10 4.53 4.91 -79.77 -0.39 4.14 16 15 C -0.12 -4.14 6.33 31.78 0.20 -3.94 16 16 C -0.13 -5.12 7.08 31.99 0.23 -4.89 16 17 C 0.15 7.69 5.98 86.85 0.52 8.21 16 18 N -0.58 -29.74 1.92 -668.26 -1.28 -31.02 16 19 C -0.15 -8.60 7.49 84.04 0.63 -7.97 16 20 H 0.09 5.01 3.41 -2.91 -0.01 5.00 16 21 C -0.09 -5.39 5.49 84.86 0.47 -4.93 16 22 N -0.96 -60.19 10.05 21.65 0.22 -59.97 16 23 Si 0.93 49.42 29.55 68.60 2.03 51.45 16 24 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.30 -16.00 7.11 99.48 0.71 -15.29 16 26 H -0.30 -16.41 7.11 99.48 0.71 -15.70 16 27 N -0.22 -7.89 8.66 -49.99 -0.43 -8.32 16 28 N -0.09 -3.03 13.78 37.02 0.51 -2.52 16 29 N -0.35 -9.17 4.03 -355.09 -1.43 -10.60 16 30 C 0.07 0.91 11.33 127.77 1.45 2.35 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.12 1.75 7.18 -2.39 -0.02 1.73 16 33 H 0.10 2.89 6.49 -2.38 -0.02 2.88 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.13 4.45 3.61 -101.22 -0.37 4.09 16 36 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.04 2.08 6.44 -2.38 -0.02 2.07 16 41 H 0.06 2.28 7.05 -2.39 -0.02 2.26 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.07 2.20 6.72 -2.39 -0.02 2.18 16 44 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 46 H 0.07 4.09 5.72 -2.39 -0.01 4.08 16 47 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 48 H 0.23 14.55 8.31 -92.70 -0.77 13.78 16 49 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.12 1.03 8.14 -2.38 -0.02 1.02 16 51 H 0.13 0.79 7.16 -2.39 -0.02 0.77 16 Total: -1.00 -77.77 372.91 3.96 -73.80 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.22 Total: 20.87 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 6.42 Total: 13.65 kcal Atomic # 7 Polarization: -132.13 SS G_CDS: -4.67 Total: -136.80 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.03 Total: -22.97 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.03 Total: 51.45 kcal Total: -77.77 3.96 -73.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025215762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.860 kcal (2) G-P(sol) polarization free energy of solvation -77.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds