Wall clock time and date at job start Wed Apr 1 2020 05:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36597 * 126.57501 * 2 1 4 4 C 1.47515 * 125.77253 * 359.97438 * 3 2 1 5 5 O 1.21593 * 120.00510 * 354.15117 * 4 3 2 6 6 N 1.34778 * 119.99994 * 174.15753 * 4 3 2 7 7 C 1.46929 * 120.63163 * 5.35781 * 6 4 3 8 8 C 1.53189 * 108.77705 * 233.63541 * 7 6 4 9 9 C 1.53044 * 109.31358 * 305.36154 * 8 7 6 10 10 C 1.53041 * 109.53408 * 61.36594 * 9 8 7 11 11 C 1.46931 * 120.63172 * 185.38767 * 6 4 3 12 12 H 1.08999 * 109.58114 * 246.29497 * 11 6 4 13 13 C 1.52998 * 109.58382 * 6.57371 * 11 6 4 14 14 H 1.08995 * 109.87552 * 314.35415 * 13 11 6 15 15 C 1.54326 * 110.00663 * 193.25478 * 13 11 6 16 16 C 1.55280 * 103.00335 * 218.40039 * 15 13 11 17 17 C 1.54906 * 101.53213 * 35.36435 * 16 15 13 18 18 N 1.47029 * 109.87973 * 75.37620 * 13 11 6 19 19 C 1.36941 * 125.64501 * 298.48220 * 18 13 11 20 20 H 1.07999 * 119.99644 * 354.57652 * 19 18 13 21 21 C 1.38804 * 119.99926 * 174.56737 * 19 18 13 22 22 N 1.31623 * 119.99930 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00067 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47013 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47030 * 120.00440 * 23 21 19 26 26 H 1.48503 * 109.46809 * 240.00391 * 23 21 19 27 27 N 1.34407 * 108.45429 * 180.24070 * 3 2 1 28 28 N 1.28765 * 109.52235 * 359.59242 * 27 3 2 29 29 N 1.34814 * 126.58092 * 180.02562 * 2 1 3 30 30 C 1.46495 * 126.59719 * 0.02562 * 29 2 1 31 31 H 1.08996 * 109.46946 * 90.00322 * 1 2 3 32 32 H 1.09002 * 109.46995 * 209.99683 * 1 2 3 33 33 H 1.09000 * 109.47263 * 329.99496 * 1 2 3 34 34 H 1.09003 * 109.58787 * 353.42036 * 7 6 4 35 35 H 1.08999 * 109.58488 * 113.70216 * 7 6 4 36 36 H 1.08995 * 109.50072 * 65.31279 * 8 7 6 37 37 H 1.08999 * 109.49864 * 185.41160 * 8 7 6 38 38 H 1.08997 * 109.46092 * 181.38089 * 9 8 7 39 39 H 1.08993 * 109.46295 * 301.34943 * 9 8 7 40 40 H 1.08997 * 109.49597 * 178.68158 * 10 9 8 41 41 H 1.08999 * 109.50143 * 58.58916 * 10 9 8 42 42 H 1.08998 * 110.72495 * 336.68090 * 15 13 11 43 43 H 1.08994 * 110.71858 * 99.78435 * 15 13 11 44 44 H 1.09004 * 110.96021 * 277.33290 * 16 15 13 45 45 H 1.09000 * 111.09831 * 153.45196 * 16 15 13 46 46 H 1.09000 * 110.36556 * 204.23301 * 17 16 15 47 47 H 1.08995 * 110.36698 * 82.02092 * 17 16 15 48 48 H 0.96998 * 119.99848 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.47471 * 89.99774 * 30 29 2 50 50 H 1.08998 * 109.47311 * 210.00474 * 30 29 2 51 51 H 1.09004 * 109.47340 * 329.99793 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6911 2.7644 -0.1083 6 7 2.7757 3.4970 0.1183 7 6 4.2154 3.2040 0.1316 8 6 4.8357 3.8354 1.3819 9 6 4.4977 5.3276 1.4162 10 6 2.9795 5.5069 1.4869 11 6 2.3381 4.8945 0.2378 12 1 2.6494 5.4516 -0.6458 13 6 0.8144 4.9456 0.3660 14 1 0.3581 4.2866 -0.3727 15 6 0.3153 6.3912 0.1592 16 6 -0.8319 6.5167 1.1981 17 6 -0.2862 5.6593 2.3671 18 7 0.4123 4.5344 1.7191 19 6 0.6474 3.3091 2.2837 20 1 1.0909 2.5196 1.6953 21 6 0.3157 3.0821 3.6123 22 7 -0.2251 4.0443 4.3293 23 14 0.6370 1.4109 4.3828 24 1 1.2480 0.5096 3.3731 25 1 1.5638 1.5660 5.5327 26 1 -0.6450 0.8290 4.8552 27 7 3.5984 0.6790 -0.0054 28 7 3.6299 -0.6083 -0.0001 29 7 2.3105 -1.0826 -0.0005 30 6 1.8865 -2.4848 -0.0016 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 4.3686 2.1250 0.1528 35 1 4.6815 3.6217 -0.7609 36 1 4.4338 3.3508 2.2717 37 1 5.9179 3.7080 1.3551 38 1 4.9584 5.7843 2.2921 39 1 4.8783 5.8070 0.5143 40 1 2.7405 6.5693 1.5349 41 1 2.5950 5.0066 2.3757 42 1 1.1082 7.1075 0.3744 43 1 -0.0613 6.5278 -0.8545 44 1 -1.7596 6.0990 0.8070 45 1 -0.9711 7.5532 1.5056 46 1 -1.1068 5.2919 2.9834 47 1 0.4101 6.2408 2.9713 48 1 -0.4572 3.8856 5.2576 49 1 1.7817 -2.8319 -1.0296 50 1 2.6330 -3.0906 0.5121 51 1 0.9293 -2.5755 0.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025215765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:27 Heat of formation + Delta-G solvation = 154.561261 kcal Electronic energy + Delta-G solvation = -34639.801568 eV Core-core repulsion = 30579.949818 eV Total energy + Delta-G solvation = -4059.851750 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.11116 -40.03882 -36.98717 -36.46679 -34.82195 -32.45129 -32.20373 -32.04825 -30.80265 -28.91766 -28.01380 -27.43284 -26.94232 -24.83441 -23.98620 -22.95141 -22.37700 -21.04191 -20.21704 -19.98636 -19.27677 -18.63229 -17.10072 -16.63365 -16.25226 -15.71642 -15.49420 -14.96365 -14.43075 -14.34469 -14.00642 -13.93533 -13.68364 -13.59136 -13.28476 -13.20500 -12.92288 -12.82895 -12.74362 -12.46127 -12.30040 -11.93286 -11.79570 -11.67490 -11.52919 -11.22696 -10.99490 -10.89979 -10.77092 -10.67360 -10.47873 -10.14786 -10.07565 -9.96382 -9.88587 -9.70547 -9.49551 -9.43155 -9.03388 -8.73222 -8.42897 -8.01018 -7.74404 -6.43104 -5.45668 -2.75894 1.34502 2.06429 2.16222 3.42152 3.46825 3.51003 3.55457 3.96475 4.39783 4.41572 4.65202 4.79323 4.83615 4.96688 5.11170 5.31759 5.39141 5.46097 5.55078 5.61519 5.64812 5.66694 5.75633 5.84585 5.85249 5.92491 5.93315 5.95512 6.12712 6.17629 6.21867 6.25987 6.38550 6.46806 6.54117 6.58340 6.63414 6.66010 6.74950 6.76694 6.84539 6.90272 6.95257 7.24047 7.45449 7.70040 7.80046 7.90996 8.07359 8.09232 8.24515 8.56665 8.99450 9.47776 10.10814 10.79072 11.63494 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010230 B = 0.006089 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.470713 B = 4597.063011 C = 5521.281383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.125 3.875 3 C -0.091 4.091 4 C 0.610 3.390 5 O -0.495 6.495 6 N -0.583 5.583 7 C 0.070 3.930 8 C -0.129 4.129 9 C -0.118 4.118 10 C -0.124 4.124 11 C 0.143 3.857 12 H 0.052 0.948 13 C 0.122 3.878 14 H 0.114 0.886 15 C -0.131 4.131 16 C -0.145 4.145 17 C 0.164 3.836 18 N -0.577 5.577 19 C -0.184 4.184 20 H 0.091 0.909 21 C -0.025 4.025 22 N -0.928 5.928 23 Si 0.890 3.110 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.295 1.295 27 N -0.207 5.207 28 N -0.083 5.083 29 N -0.367 5.367 30 C 0.089 3.911 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.138 0.862 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.088 0.912 47 H 0.011 0.989 48 H 0.244 0.756 49 H 0.086 0.914 50 H 0.097 0.903 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.417 -6.255 -10.831 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.012 4.012 3 C -0.231 4.231 4 C 0.397 3.603 5 O -0.371 6.371 6 N -0.314 5.314 7 C -0.054 4.054 8 C -0.167 4.167 9 C -0.155 4.155 10 C -0.162 4.162 11 C 0.038 3.962 12 H 0.070 0.930 13 C 0.015 3.985 14 H 0.131 0.869 15 C -0.169 4.169 16 C -0.184 4.184 17 C 0.039 3.961 18 N -0.300 5.300 19 C -0.313 4.313 20 H 0.108 0.892 21 C -0.218 4.218 22 N -0.579 5.579 23 Si 0.723 3.277 24 H -0.213 1.213 25 H -0.224 1.224 26 H -0.222 1.222 27 N -0.079 5.079 28 N -0.062 5.062 29 N -0.154 5.154 30 C -0.052 4.052 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.142 0.858 34 H 0.154 0.846 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.106 0.894 47 H 0.029 0.971 48 H 0.055 0.945 49 H 0.105 0.895 50 H 0.116 0.884 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.238 -6.706 -10.696 13.668 hybrid contribution -0.408 -0.711 0.854 1.183 sum 4.830 -7.416 -9.842 13.236 Atomic orbital electron populations 1.20781 0.84596 1.06066 1.04183 1.21921 0.96332 0.86127 0.96782 1.21706 0.88342 0.96492 1.16515 1.16475 0.85438 0.81835 0.76523 1.90707 1.16147 1.80180 1.50029 1.47609 1.05893 1.06513 1.71388 1.22705 0.80094 1.05812 0.96771 1.21821 0.99407 0.96309 0.99150 1.21539 0.97595 0.95926 1.00475 1.21896 0.93111 1.00231 1.01006 1.22029 0.98695 0.79451 0.96048 0.93007 1.22448 0.89839 0.93326 0.92847 0.86944 1.22691 0.98317 0.97816 0.98105 1.22990 0.97453 0.99194 0.98744 1.21632 0.96490 0.86876 0.91095 1.44292 1.64569 1.10795 1.10298 1.19661 1.30999 0.88404 0.92246 0.89201 1.24712 1.03521 0.96790 0.96807 1.69897 1.50009 1.30304 1.07734 0.86310 0.77147 0.84860 0.79340 1.21323 1.22403 1.22243 1.73981 1.19121 1.03375 1.11439 1.81891 0.96315 1.04175 1.23771 1.50147 1.06481 1.07580 1.51206 1.22095 1.02399 0.76457 1.04267 0.89280 0.91230 0.85796 0.84571 0.92905 0.91452 0.92035 0.92785 0.93189 0.92463 0.88115 0.92819 0.92879 0.92621 0.93156 0.89434 0.97126 0.94527 0.89508 0.88387 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 9.51 36.01 0.34 -1.01 16 2 C 0.13 2.03 7.02 -81.87 -0.57 1.45 16 3 C -0.09 -1.70 6.62 -83.55 -0.55 -2.26 16 4 C 0.61 12.35 4.77 -12.48 -0.06 12.30 16 5 O -0.49 -10.72 8.30 5.28 0.04 -10.68 16 6 N -0.58 -11.14 2.83 -166.44 -0.47 -11.61 16 7 C 0.07 1.18 6.33 -3.71 -0.02 1.16 16 8 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 9 C -0.12 -1.90 5.88 -26.69 -0.16 -2.06 16 10 C -0.12 -2.39 4.94 -26.61 -0.13 -2.52 16 11 C 0.14 2.71 2.53 -67.60 -0.17 2.54 16 12 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 13 C 0.12 2.56 2.32 -66.95 -0.16 2.40 16 14 H 0.11 2.55 4.87 -56.99 -0.28 2.27 16 15 C -0.13 -2.40 6.33 -24.83 -0.16 -2.55 16 16 C -0.15 -2.87 7.10 -24.52 -0.17 -3.05 16 17 C 0.16 4.01 5.67 -2.53 -0.01 3.99 16 18 N -0.58 -14.13 1.92 -162.58 -0.31 -14.44 16 19 C -0.18 -4.90 7.54 -15.06 -0.11 -5.02 16 20 H 0.09 2.35 3.40 -52.49 -0.18 2.17 16 21 C -0.02 -0.70 5.48 -17.43 -0.10 -0.79 16 22 N -0.93 -27.37 10.23 55.49 0.57 -26.81 16 23 Si 0.89 22.75 29.55 -169.99 -5.02 17.72 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 N -0.21 -3.74 8.64 32.85 0.28 -3.45 16 28 N -0.08 -1.38 13.78 60.35 0.83 -0.55 16 29 N -0.37 -5.19 4.03 -63.59 -0.26 -5.44 16 30 C 0.09 0.73 11.33 59.84 0.68 1.40 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.76 7.18 -51.93 -0.37 0.39 16 33 H 0.12 2.19 6.57 -51.93 -0.34 1.85 16 34 H 0.14 2.38 3.59 -131.69 -0.47 1.91 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.06 7.10 -51.93 -0.37 0.69 16 41 H 0.10 2.42 6.39 -51.93 -0.33 2.09 16 42 H 0.05 0.93 6.77 -51.93 -0.35 0.58 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.09 2.43 6.25 -51.93 -0.32 2.11 16 47 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.24 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 51 H 0.09 0.62 7.16 -51.93 -0.37 0.24 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -32.62 373.48 -8.25 -40.87 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.02 Total: 5.04 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.52 Total: 3.71 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: 0.64 Total: -62.30 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.04 Total: -10.68 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.62 -8.25 -40.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025215765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.432 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds