Wall clock time and date at job start Wed Apr 1 2020 05:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36597 * 126.57501 * 2 1 4 4 C 1.47515 * 125.77253 * 359.97438 * 3 2 1 5 5 O 1.21593 * 120.00510 * 354.15117 * 4 3 2 6 6 N 1.34778 * 119.99994 * 174.15753 * 4 3 2 7 7 C 1.46929 * 120.63163 * 5.35781 * 6 4 3 8 8 C 1.53189 * 108.77705 * 233.63541 * 7 6 4 9 9 C 1.53044 * 109.31358 * 305.36154 * 8 7 6 10 10 C 1.53041 * 109.53408 * 61.36594 * 9 8 7 11 11 C 1.46931 * 120.63172 * 185.38767 * 6 4 3 12 12 H 1.08999 * 109.58114 * 246.29497 * 11 6 4 13 13 C 1.52998 * 109.58382 * 6.57371 * 11 6 4 14 14 H 1.08995 * 109.87552 * 314.35415 * 13 11 6 15 15 C 1.54326 * 110.00663 * 193.25478 * 13 11 6 16 16 C 1.55280 * 103.00335 * 218.40039 * 15 13 11 17 17 C 1.54906 * 101.53213 * 35.36435 * 16 15 13 18 18 N 1.47029 * 109.87973 * 75.37620 * 13 11 6 19 19 C 1.36941 * 125.64501 * 298.48220 * 18 13 11 20 20 H 1.07999 * 119.99644 * 354.57652 * 19 18 13 21 21 C 1.38804 * 119.99926 * 174.56737 * 19 18 13 22 22 N 1.31623 * 119.99930 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00067 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47013 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47030 * 120.00440 * 23 21 19 26 26 H 1.48503 * 109.46809 * 240.00391 * 23 21 19 27 27 N 1.34407 * 108.45429 * 180.24070 * 3 2 1 28 28 N 1.28765 * 109.52235 * 359.59242 * 27 3 2 29 29 N 1.34814 * 126.58092 * 180.02562 * 2 1 3 30 30 C 1.46495 * 126.59719 * 0.02562 * 29 2 1 31 31 H 1.08996 * 109.46946 * 90.00322 * 1 2 3 32 32 H 1.09002 * 109.46995 * 209.99683 * 1 2 3 33 33 H 1.09000 * 109.47263 * 329.99496 * 1 2 3 34 34 H 1.09003 * 109.58787 * 353.42036 * 7 6 4 35 35 H 1.08999 * 109.58488 * 113.70216 * 7 6 4 36 36 H 1.08995 * 109.50072 * 65.31279 * 8 7 6 37 37 H 1.08999 * 109.49864 * 185.41160 * 8 7 6 38 38 H 1.08997 * 109.46092 * 181.38089 * 9 8 7 39 39 H 1.08993 * 109.46295 * 301.34943 * 9 8 7 40 40 H 1.08997 * 109.49597 * 178.68158 * 10 9 8 41 41 H 1.08999 * 109.50143 * 58.58916 * 10 9 8 42 42 H 1.08998 * 110.72495 * 336.68090 * 15 13 11 43 43 H 1.08994 * 110.71858 * 99.78435 * 15 13 11 44 44 H 1.09004 * 110.96021 * 277.33290 * 16 15 13 45 45 H 1.09000 * 111.09831 * 153.45196 * 16 15 13 46 46 H 1.09000 * 110.36556 * 204.23301 * 17 16 15 47 47 H 1.08995 * 110.36698 * 82.02092 * 17 16 15 48 48 H 0.96998 * 119.99848 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.47471 * 89.99774 * 30 29 2 50 50 H 1.08998 * 109.47311 * 210.00474 * 30 29 2 51 51 H 1.09004 * 109.47340 * 329.99793 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5027 -0.0005 5 8 0.6911 2.7644 -0.1083 6 7 2.7757 3.4970 0.1183 7 6 4.2154 3.2040 0.1316 8 6 4.8357 3.8354 1.3819 9 6 4.4977 5.3276 1.4162 10 6 2.9795 5.5069 1.4869 11 6 2.3381 4.8945 0.2378 12 1 2.6494 5.4516 -0.6458 13 6 0.8144 4.9456 0.3660 14 1 0.3581 4.2866 -0.3727 15 6 0.3153 6.3912 0.1592 16 6 -0.8319 6.5167 1.1981 17 6 -0.2862 5.6593 2.3671 18 7 0.4123 4.5344 1.7191 19 6 0.6474 3.3091 2.2837 20 1 1.0909 2.5196 1.6953 21 6 0.3157 3.0821 3.6123 22 7 -0.2251 4.0443 4.3293 23 14 0.6370 1.4109 4.3828 24 1 1.2480 0.5096 3.3731 25 1 1.5638 1.5660 5.5327 26 1 -0.6450 0.8290 4.8552 27 7 3.5984 0.6790 -0.0054 28 7 3.6299 -0.6083 -0.0001 29 7 2.3105 -1.0826 -0.0005 30 6 1.8865 -2.4848 -0.0016 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 4.3686 2.1250 0.1528 35 1 4.6815 3.6217 -0.7609 36 1 4.4338 3.3508 2.2717 37 1 5.9179 3.7080 1.3551 38 1 4.9584 5.7843 2.2921 39 1 4.8783 5.8070 0.5143 40 1 2.7405 6.5693 1.5349 41 1 2.5950 5.0066 2.3757 42 1 1.1082 7.1075 0.3744 43 1 -0.0613 6.5278 -0.8545 44 1 -1.7596 6.0990 0.8070 45 1 -0.9711 7.5532 1.5056 46 1 -1.1068 5.2919 2.9834 47 1 0.4101 6.2408 2.9713 48 1 -0.4572 3.8856 5.2576 49 1 1.7817 -2.8319 -1.0296 50 1 2.6330 -3.0906 0.5121 51 1 0.9293 -2.5755 0.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025215765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:26 Heat of formation + Delta-G solvation = 133.799257 kcal Electronic energy + Delta-G solvation = -34640.701876 eV Core-core repulsion = 30579.949818 eV Total energy + Delta-G solvation = -4060.752058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.35794 -41.56373 -38.59989 -38.01649 -35.94318 -34.39906 -33.63328 -33.31932 -32.27079 -30.85837 -29.18058 -28.64064 -28.30844 -26.57186 -25.68546 -24.35935 -23.76854 -22.30618 -21.77662 -21.55789 -20.85976 -20.08617 -18.83299 -18.16508 -17.60602 -17.13986 -16.77207 -16.51587 -16.11517 -15.76984 -15.69062 -15.45277 -15.12015 -14.92522 -14.51031 -14.35416 -14.22233 -14.14817 -13.95518 -13.89341 -13.57717 -13.51423 -13.37222 -13.24656 -12.96674 -12.88062 -12.80872 -12.65610 -12.37730 -12.25441 -12.03688 -11.84937 -11.63364 -11.47776 -11.40926 -11.14571 -11.12418 -10.93899 -10.81583 -10.51489 -10.10184 -9.62538 -9.25792 -8.41287 -7.59533 -4.88116 0.14962 0.69387 1.14990 1.31903 1.35857 1.42030 2.13292 2.50421 2.57695 3.17642 3.42161 3.55327 3.66157 3.76181 3.89986 3.98299 4.07562 4.15039 4.26920 4.30345 4.31868 4.39175 4.46270 4.47374 4.51341 4.55798 4.60077 4.65294 4.71459 4.77237 4.81591 4.94971 4.98451 5.06500 5.09650 5.14034 5.21256 5.25026 5.26389 5.33202 5.37213 5.50024 5.54065 5.71918 5.78670 5.84039 5.87841 5.98767 6.15945 6.49562 6.65661 6.92685 7.35333 7.49057 8.08335 8.72896 9.49221 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010230 B = 0.006089 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.470713 B = 4597.063011 C = 5521.281383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.123 3.877 3 C -0.124 4.124 4 C 0.601 3.399 5 O -0.519 6.519 6 N -0.588 5.588 7 C 0.068 3.932 8 C -0.125 4.125 9 C -0.111 4.111 10 C -0.116 4.116 11 C 0.144 3.856 12 H 0.082 0.918 13 C 0.115 3.885 14 H 0.104 0.896 15 C -0.120 4.120 16 C -0.132 4.132 17 C 0.169 3.831 18 N -0.585 5.585 19 C -0.158 4.158 20 H 0.098 0.902 21 C -0.090 4.090 22 N -0.960 5.960 23 Si 0.938 3.062 24 H -0.278 1.278 25 H -0.311 1.311 26 H -0.295 1.295 27 N -0.219 5.219 28 N -0.094 5.094 29 N -0.354 5.354 30 C 0.072 3.928 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.028 0.972 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.047 0.953 47 H -0.016 1.016 48 H 0.231 0.769 49 H 0.117 0.883 50 H 0.111 0.889 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.549 -6.996 -13.624 16.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.016 4.016 3 C -0.264 4.264 4 C 0.389 3.611 5 O -0.398 6.398 6 N -0.319 5.319 7 C -0.056 4.056 8 C -0.163 4.163 9 C -0.148 4.148 10 C -0.155 4.155 11 C 0.039 3.961 12 H 0.100 0.900 13 C 0.009 3.991 14 H 0.120 0.880 15 C -0.158 4.158 16 C -0.171 4.171 17 C 0.043 3.957 18 N -0.307 5.307 19 C -0.289 4.289 20 H 0.115 0.885 21 C -0.280 4.280 22 N -0.615 5.615 23 Si 0.772 3.228 24 H -0.203 1.203 25 H -0.240 1.240 26 H -0.223 1.223 27 N -0.090 5.090 28 N -0.073 5.073 29 N -0.141 5.141 30 C -0.066 4.066 31 H 0.132 0.868 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.150 0.850 35 H 0.097 0.903 36 H 0.047 0.953 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.001 0.999 48 H 0.041 0.959 49 H 0.135 0.865 50 H 0.130 0.870 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.407 -7.479 -13.536 16.740 hybrid contribution -0.740 -0.569 1.625 1.874 sum 5.667 -8.049 -11.911 15.452 Atomic orbital electron populations 1.20776 0.83157 1.05549 1.05639 1.22209 0.97232 0.86178 0.95956 1.21691 0.89350 0.96447 1.18934 1.16791 0.85361 0.82767 0.76202 1.90681 1.16982 1.80857 1.51255 1.47770 1.06875 1.06378 1.70904 1.22851 0.78865 1.05990 0.97845 1.21796 1.01057 0.96095 0.97350 1.21500 0.95157 0.95980 1.02200 1.21730 0.95380 0.99701 0.98642 1.21954 0.97064 0.80060 0.96973 0.89991 1.22537 0.91401 0.94845 0.90333 0.87980 1.22672 0.97875 0.96176 0.99101 1.22838 0.97802 0.99426 0.97035 1.21380 0.94632 0.87314 0.92364 1.44472 1.64496 1.10147 1.11632 1.20015 1.27717 0.89313 0.91845 0.88454 1.25293 1.05603 0.99224 0.97858 1.70123 1.52613 1.31602 1.07153 0.85500 0.76511 0.82614 0.78183 1.20312 1.24044 1.22290 1.73942 1.19020 1.04023 1.12055 1.81777 0.97830 1.03752 1.23921 1.50497 1.05234 1.09150 1.49176 1.22693 1.03769 0.73335 1.06831 0.86798 0.88078 0.89803 0.84993 0.90250 0.95296 0.88979 0.92302 0.90112 0.91976 0.93689 0.91359 0.89906 0.92635 0.90750 0.93429 0.99857 0.95857 0.86497 0.87010 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.43 9.51 71.24 0.68 -1.75 16 2 C 0.12 3.80 7.02 41.72 0.29 4.09 16 3 C -0.12 -4.60 6.62 40.81 0.27 -4.33 16 4 C 0.60 24.29 4.77 86.69 0.41 24.71 16 5 O -0.52 -22.74 8.30 -4.01 -0.03 -22.77 16 6 N -0.59 -22.02 2.83 -798.77 -2.26 -24.28 16 7 C 0.07 2.17 6.33 86.36 0.55 2.71 16 8 C -0.12 -3.93 6.08 30.67 0.19 -3.74 16 9 C -0.11 -3.36 5.88 30.62 0.18 -3.18 16 10 C -0.12 -4.39 4.94 30.67 0.15 -4.24 16 11 C 0.14 5.26 2.53 44.97 0.11 5.38 16 12 H 0.08 2.56 8.09 -2.39 -0.02 2.54 16 13 C 0.11 4.72 2.32 45.34 0.11 4.82 16 14 H 0.10 4.58 4.87 -82.47 -0.40 4.17 16 15 C -0.12 -4.12 6.33 31.83 0.20 -3.92 16 16 C -0.13 -5.13 7.10 32.03 0.23 -4.91 16 17 C 0.17 8.55 5.67 86.85 0.49 9.04 16 18 N -0.59 -29.48 1.92 -668.28 -1.29 -30.77 16 19 C -0.16 -8.76 7.54 84.03 0.63 -8.13 16 20 H 0.10 5.24 3.40 -2.91 -0.01 5.23 16 21 C -0.09 -5.32 5.48 84.86 0.47 -4.86 16 22 N -0.96 -60.05 10.23 21.65 0.22 -59.83 16 23 Si 0.94 48.79 29.55 68.60 2.03 50.81 16 24 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.31 -16.78 7.11 99.48 0.71 -16.07 16 26 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 27 N -0.22 -7.72 8.64 -50.00 -0.43 -8.15 16 28 N -0.09 -2.99 13.78 37.02 0.51 -2.48 16 29 N -0.35 -9.18 4.03 -355.10 -1.43 -10.61 16 30 C 0.07 0.92 11.33 127.77 1.45 2.37 16 31 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.10 1.94 7.18 -2.39 -0.02 1.92 16 33 H 0.08 2.98 6.57 -2.39 -0.02 2.96 16 34 H 0.13 4.49 3.59 -105.59 -0.38 4.11 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.06 2.24 7.10 -2.39 -0.02 2.22 16 41 H 0.04 2.23 6.39 -2.39 -0.02 2.21 16 42 H 0.07 2.16 6.77 -2.39 -0.02 2.14 16 43 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 45 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.05 2.80 6.25 -2.39 -0.01 2.78 16 47 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 48 H 0.23 14.42 8.31 -92.71 -0.77 13.65 16 49 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.12 1.03 7.16 -2.38 -0.02 1.01 16 Total: -1.00 -76.89 373.48 3.92 -72.98 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.19 Total: 21.03 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 6.41 Total: 14.06 kcal Atomic # 7 Polarization: -131.44 SS G_CDS: -4.68 Total: -136.11 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.03 Total: -22.77 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.03 Total: 50.81 kcal Total: -76.89 3.92 -72.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025215765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.776 kcal (2) G-P(sol) polarization free energy of solvation -76.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds