Wall clock time and date at job start Wed Apr 1 2020 05:28:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.30842 * 125.96043 * 2 1
4 4 C 1.33240 * 109.82637 * 180.12537 * 3 2 1
5 5 C 1.50703 * 125.52390 * 179.85228 * 4 3 2
6 6 C 1.50701 * 109.46908 * 269.71510 * 5 4 3
7 7 O 1.21275 * 120.00246 * 0.02562 * 6 5 4
8 8 N 1.34780 * 119.99834 * 179.97438 * 6 5 4
9 9 C 1.46928 * 120.62797 * 354.33574 * 8 6 5
10 10 C 1.53192 * 108.77860 * 126.41091 * 9 8 6
11 11 C 1.53044 * 109.33847 * 54.61420 * 10 9 8
12 12 C 1.53043 * 109.53725 * 298.68414 * 11 10 9
13 13 C 1.46915 * 120.63306 * 174.34934 * 8 6 5
14 14 H 1.08999 * 109.58938 * 113.80306 * 13 8 6
15 15 C 1.53000 * 109.58843 * 353.37941 * 13 8 6
16 16 H 1.09005 * 109.87055 * 50.15116 * 15 13 8
17 17 C 1.54326 * 109.88801 * 171.16778 * 15 13 8
18 18 C 1.55156 * 102.94219 * 141.60973 * 17 15 13
19 19 C 1.54913 * 101.58196 * 324.49976 * 18 17 15
20 20 N 1.47027 * 109.88331 * 289.14128 * 15 13 8
21 21 C 1.36936 * 125.65073 * 61.59968 * 20 15 13
22 22 H 1.08001 * 119.99617 * 305.96632 * 21 20 15
23 23 C 1.38803 * 119.99890 * 125.96312 * 21 20 15
24 24 N 1.31623 * 120.00268 * 173.98252 * 23 21 20
25 25 Si 1.86802 * 120.00099 * 353.98482 * 23 21 20
26 26 H 1.48503 * 109.47263 * 94.97616 * 25 23 21
27 27 H 1.48501 * 109.47093 * 214.97381 * 25 23 21
28 28 H 1.48496 * 109.47285 * 334.97442 * 25 23 21
29 29 N 1.30712 * 108.94709 * 359.58883 * 4 3 2
30 30 N 1.34426 * 125.96513 * 179.66947 * 2 1 3
31 31 H 0.97003 * 126.82109 * 0.06767 * 30 2 1
32 32 H 1.09010 * 109.46871 * 270.33308 * 1 2 3
33 33 H 1.08998 * 109.47079 * 30.32632 * 1 2 3
34 34 H 1.08997 * 109.47634 * 150.33056 * 1 2 3
35 35 H 1.08996 * 109.46943 * 149.71499 * 5 4 3
36 36 H 1.08999 * 109.47130 * 29.71935 * 5 4 3
37 37 H 1.08999 * 109.58799 * 6.61537 * 9 8 6
38 38 H 1.09010 * 109.58509 * 246.19720 * 9 8 6
39 39 H 1.08995 * 109.49666 * 174.58256 * 10 9 8
40 40 H 1.09000 * 109.49580 * 294.64672 * 10 9 8
41 41 H 1.08999 * 109.46052 * 58.67506 * 11 10 9
42 42 H 1.09005 * 109.45851 * 178.63578 * 11 10 9
43 43 H 1.08993 * 109.47131 * 301.36322 * 12 11 10
44 44 H 1.09005 * 109.51993 * 181.30077 * 12 11 10
45 45 H 1.08992 * 110.72162 * 259.97419 * 17 15 13
46 46 H 1.08996 * 110.71365 * 23.07390 * 17 15 13
47 47 H 1.08995 * 111.00438 * 82.57560 * 18 17 15
48 48 H 1.09003 * 111.00455 * 206.38836 * 18 17 15
49 49 H 1.09006 * 110.36464 * 155.84665 * 19 18 17
50 50 H 1.08994 * 110.36763 * 278.17100 * 19 18 17
51 51 H 0.97000 * 120.00287 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2753 1.0591 0.0000
4 6 3.5552 0.6888 -0.0027
5 6 4.7372 1.6237 -0.0068
6 6 5.1320 1.9281 -1.4290
7 8 4.5142 1.4349 -2.3486
8 7 6.1711 2.7493 -1.6788
9 6 6.8502 3.4523 -0.5818
10 6 8.3513 3.1569 -0.6612
11 6 8.8664 3.5212 -2.0555
12 6 8.1495 2.6687 -3.1050
13 6 6.6461 2.9586 -3.0532
14 1 6.4628 3.9913 -3.3499
15 6 5.9082 2.0110 -4.0010
16 1 4.8335 2.0816 -3.8329
17 6 6.2353 2.3729 -5.4651
18 6 6.3420 0.9851 -6.1506
19 6 6.9753 0.1300 -5.0247
20 7 6.3593 0.6295 -3.7781
21 6 6.2309 -0.0735 -2.6100
22 1 6.6101 0.3394 -1.6869
23 6 5.6133 -1.3165 -2.6124
24 7 5.5944 -2.0442 -1.5158
25 14 4.8089 -1.9568 -4.1721
26 1 5.7669 -2.8252 -4.9025
27 1 3.5992 -2.7423 -3.8186
28 1 4.4212 -0.8122 -5.0350
29 7 3.6194 -0.6167 0.0043
30 7 2.2964 -1.0880 0.0063
31 1 2.0094 -2.0146 0.0107
32 1 -0.3633 0.0060 1.0278
33 1 -0.3633 0.8870 -0.5189
34 1 -0.3634 -0.8929 -0.5087
35 1 5.5739 1.1537 0.5099
36 1 4.4698 2.5497 0.5022
37 1 6.4590 3.1030 0.3737
38 1 6.6834 4.5254 -0.6769
39 1 8.8784 3.7482 0.0874
40 1 8.5237 2.0969 -0.4751
41 1 8.6719 4.5759 -2.2505
42 1 9.9392 3.3346 -2.1065
43 1 8.3239 1.6132 -2.8965
44 1 8.5331 2.9120 -4.0959
45 1 5.4300 2.9601 -5.9064
46 1 7.1814 2.9105 -5.5272
47 1 5.3566 0.6064 -6.4215
48 1 6.9946 1.0292 -7.0225
49 1 6.7361 -0.9238 -5.1686
50 1 8.0553 0.2748 -5.0002
51 1 5.1631 -2.9130 -1.5175
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001025229227.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:28:24
Heat of formation + Delta-G solvation = 123.676635 kcal
Electronic energy + Delta-G solvation = -34515.824598 eV
Core-core repulsion = 30454.633590 eV
Total energy + Delta-G solvation = -4061.191008 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-41.38992 -40.00287 -36.99023 -36.41793 -33.03046 -32.22787 -32.11903 -31.67332
-31.15064 -29.58037 -29.06676 -27.34271 -26.95796 -24.44600 -23.77108 -22.59901
-21.25225 -20.45381 -20.33830 -19.78604 -19.09032 -18.02687 -17.15886 -16.83066
-16.09478 -15.45297 -15.07565 -14.85284 -14.53822 -14.28301 -13.97187 -13.75501
-13.54741 -13.29788 -13.03688 -12.92935 -12.76387 -12.53623 -12.43244 -12.36429
-12.24005 -11.99167 -11.88110 -11.29781 -11.05125 -10.98371 -10.90243 -10.81717
-10.79375 -10.47959 -10.40145 -10.29349 -10.09290 -10.03280 -9.71074 -9.69541
-9.37128 -9.33262 -9.22050 -8.67724 -8.08076 -7.72728 -7.54252 -5.97480
-5.57466 -3.15195 2.38348 3.33586 3.45230 3.51329 3.60365 3.77105
3.85605 4.03177 4.53012 4.85266 5.12262 5.18117 5.25055 5.29370
5.30128 5.36858 5.51658 5.52688 5.56732 5.67180 5.70755 5.76576
5.79500 5.81816 5.87709 5.90541 5.93554 6.01577 6.06576 6.16004
6.22076 6.28582 6.32294 6.37864 6.43498 6.51021 6.57683 6.60186
6.67253 6.72653 6.90127 7.01517 7.08126 7.16883 7.20673 7.36064
7.70909 7.72377 8.42502 8.47608 8.73685 8.86970 9.21110 9.48695
10.04310 10.73241 11.50999
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.010445 B = 0.006164 C = 0.004688
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2679.975487 B = 4541.280661 C = 5970.653685
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 C 0.252 3.748
3 N -0.538 5.538
4 C 0.233 3.767
5 C -0.036 4.036
6 C 0.531 3.469
7 O -0.458 6.458
8 N -0.613 5.613
9 C 0.114 3.886
10 C -0.133 4.133
11 C -0.115 4.115
12 C -0.125 4.125
13 C 0.152 3.848
14 H 0.048 0.952
15 C 0.130 3.870
16 H 0.102 0.898
17 C -0.132 4.132
18 C -0.134 4.134
19 C 0.123 3.877
20 N -0.586 5.586
21 C -0.221 4.221
22 H 0.070 0.930
23 C 0.059 3.941
24 N -0.879 5.879
25 Si 0.884 3.116
26 H -0.301 1.301
27 H -0.316 1.316
28 H -0.265 1.265
29 N -0.211 5.211
30 N -0.489 5.489
31 H 0.432 0.568
32 H 0.083 0.917
33 H 0.090 0.910
34 H 0.075 0.925
35 H 0.105 0.895
36 H 0.095 0.905
37 H 0.076 0.924
38 H 0.056 0.944
39 H 0.061 0.939
40 H 0.070 0.930
41 H 0.051 0.949
42 H 0.053 0.947
43 H 0.090 0.910
44 H 0.055 0.945
45 H 0.055 0.945
46 H 0.057 0.943
47 H 0.060 0.940
48 H 0.055 0.945
49 H 0.032 0.968
50 H 0.020 0.980
51 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.382 9.614 3.150 10.393
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.026 4.026
3 N -0.268 5.268
4 C -0.050 4.050
5 C -0.079 4.079
6 C 0.317 3.683
7 O -0.328 6.328
8 N -0.350 5.350
9 C -0.010 4.010
10 C -0.172 4.172
11 C -0.153 4.153
12 C -0.163 4.163
13 C 0.047 3.953
14 H 0.066 0.934
15 C 0.024 3.976
16 H 0.119 0.881
17 C -0.171 4.171
18 C -0.173 4.173
19 C -0.002 4.002
20 N -0.312 5.312
21 C -0.350 4.350
22 H 0.087 0.913
23 C -0.143 4.143
24 N -0.518 5.518
25 Si 0.717 3.283
26 H -0.229 1.229
27 H -0.245 1.245
28 H -0.190 1.190
29 N -0.037 5.037
30 N -0.208 5.208
31 H 0.276 0.724
32 H 0.101 0.899
33 H 0.109 0.891
34 H 0.094 0.906
35 H 0.123 0.877
36 H 0.113 0.887
37 H 0.095 0.905
38 H 0.074 0.926
39 H 0.080 0.920
40 H 0.089 0.911
41 H 0.070 0.930
42 H 0.072 0.928
43 H 0.108 0.892
44 H 0.074 0.926
45 H 0.074 0.926
46 H 0.076 0.924
47 H 0.079 0.921
48 H 0.074 0.926
49 H 0.050 0.950
50 H 0.038 0.962
51 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -2.231 9.090 2.835 9.780
hybrid contribution -0.558 -1.279 -0.964 1.696
sum -2.789 7.811 1.871 8.503
Atomic orbital electron populations
1.20223 0.84929 1.04232 1.03498 1.24079 0.96036 0.83602 0.98904
1.70150 1.01785 1.29573 1.25293 1.23221 0.91681 0.90430 0.99693
1.19791 0.93636 0.96805 0.97683 1.19431 0.80737 0.78251 0.89850
1.90626 1.52001 1.46728 1.43463 1.47717 1.33278 1.47425 1.06597
1.21534 0.92600 0.96112 0.90754 1.21886 0.95716 1.02444 0.97143
1.21493 0.99218 0.99198 0.95391 1.21909 0.94835 1.02315 0.97256
1.21671 0.93898 0.97725 0.82032 0.93405 1.22140 1.00296 0.86472
0.88666 0.88117 1.22706 1.00067 0.96459 0.97849 1.22741 1.00457
0.96637 0.97450 1.21837 0.94849 0.95832 0.87646 1.44437 1.66693
1.10615 1.09479 1.18017 1.31934 0.99322 0.85680 0.91317 1.25598
0.95580 0.98251 0.94891 1.69766 1.44816 1.11218 1.26045 0.86714
0.78149 0.77642 0.85756 1.22914 1.24514 1.18994 1.78815 0.93181
1.11156 1.20557 1.48227 1.05366 1.09426 1.57733 0.72445 0.89879
0.89093 0.90638 0.87700 0.88663 0.90519 0.92605 0.92008 0.91080
0.93020 0.92793 0.89180 0.92594 0.92631 0.92387 0.92125 0.92629
0.95032 0.96204 0.93867
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.77 10.51 36.00 0.38 -0.39 16
2 C 0.25 4.34 8.24 -155.69 -1.28 3.06 16
3 N -0.54 -10.83 11.19 -8.16 -0.09 -10.92 16
4 C 0.23 5.05 6.63 -156.85 -1.04 4.01 16
5 C -0.04 -0.70 4.68 -29.03 -0.14 -0.84 16
6 C 0.53 11.21 4.68 -10.98 -0.05 11.16 16
7 O -0.46 -11.46 9.37 5.56 0.05 -11.41 16
8 N -0.61 -11.06 2.58 -165.22 -0.43 -11.48 16
9 C 0.11 1.58 6.35 -3.71 -0.02 1.56 16
10 C -0.13 -1.79 6.08 -26.61 -0.16 -1.95 16
11 C -0.12 -1.58 5.89 -26.69 -0.16 -1.73 16
12 C -0.12 -2.10 4.96 -26.61 -0.13 -2.23 16
13 C 0.15 2.74 2.58 -67.61 -0.17 2.56 16
14 H 0.05 0.80 8.13 -51.93 -0.42 0.37 16
15 C 0.13 2.73 2.31 -66.95 -0.15 2.58 16
16 H 0.10 2.48 5.26 -55.35 -0.29 2.19 16
17 C -0.13 -2.36 6.33 -24.90 -0.16 -2.52 16
18 C -0.13 -2.58 7.02 -24.58 -0.17 -2.76 16
19 C 0.12 2.76 6.15 -2.35 -0.01 2.75 16
20 N -0.59 -14.02 1.16 -162.31 -0.19 -14.21 16
21 C -0.22 -5.96 5.89 -15.06 -0.09 -6.05 16
22 H 0.07 1.98 6.15 -52.49 -0.32 1.66 16
23 C 0.06 1.71 5.44 -17.43 -0.09 1.61 16
24 N -0.88 -25.89 12.86 55.49 0.71 -25.17 16
25 Si 0.88 24.41 25.12 -169.99 -4.27 20.14 16
26 H -0.30 -8.28 7.07 56.52 0.40 -7.89 16
27 H -0.32 -9.00 7.11 56.52 0.40 -8.60 16
28 H -0.27 -7.40 6.11 56.52 0.35 -7.05 16
29 N -0.21 -4.86 11.69 32.42 0.38 -4.49 16
30 N -0.49 -9.14 7.45 32.62 0.24 -8.90 16
31 H 0.43 6.67 8.96 -182.34 -1.63 5.04 16
32 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16
33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16
34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
35 H 0.10 2.01 7.92 -51.93 -0.41 1.60 16
36 H 0.10 1.50 7.71 -51.93 -0.40 1.10 16
37 H 0.08 0.97 5.93 -51.93 -0.31 0.66 16
38 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16
39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
40 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16
41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16
43 H 0.09 1.87 6.76 -51.93 -0.35 1.52 16
44 H 0.06 0.89 6.81 -51.93 -0.35 0.54 16
45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
46 H 0.06 0.93 6.46 -51.93 -0.34 0.59 16
47 H 0.06 1.25 7.38 -51.93 -0.38 0.87 16
48 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
49 H 0.03 0.78 4.68 -51.93 -0.24 0.54 16
50 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
51 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16
LS Contribution 375.47 15.07 5.66 5.66
Total: -1.00 -35.31 375.47 -10.70 -46.00
By element:
Atomic # 1 Polarization: 13.27 SS G_CDS: -9.30 Total: 3.97 kcal
Atomic # 6 Polarization: 14.28 SS G_CDS: -3.46 Total: 10.81 kcal
Atomic # 7 Polarization: -75.80 SS G_CDS: 0.63 Total: -75.18 kcal
Atomic # 8 Polarization: -11.46 SS G_CDS: 0.05 Total: -11.41 kcal
Atomic # 14 Polarization: 24.41 SS G_CDS: -4.27 Total: 20.14 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -35.31 -10.70 -46.00 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001025229227.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 169.681 kcal
(2) G-P(sol) polarization free energy of solvation -35.309 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.372 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.004 kcal
(6) G-S(sol) free energy of system = (1) + (5) 123.677 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds