Wall clock time and date at job start Wed Apr 1 2020 05:28:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.30842 * 125.96043 * 2 1
4 4 C 1.33240 * 109.82637 * 180.12537 * 3 2 1
5 5 C 1.50703 * 125.52390 * 179.85228 * 4 3 2
6 6 C 1.50701 * 109.46908 * 269.71510 * 5 4 3
7 7 O 1.21275 * 120.00246 * 0.02562 * 6 5 4
8 8 N 1.34780 * 119.99834 * 179.97438 * 6 5 4
9 9 C 1.46928 * 120.62797 * 354.33574 * 8 6 5
10 10 C 1.53192 * 108.77860 * 126.41091 * 9 8 6
11 11 C 1.53044 * 109.33847 * 54.61420 * 10 9 8
12 12 C 1.53043 * 109.53725 * 298.68414 * 11 10 9
13 13 C 1.46915 * 120.63306 * 174.34934 * 8 6 5
14 14 H 1.08999 * 109.58938 * 113.80306 * 13 8 6
15 15 C 1.53000 * 109.58843 * 353.37941 * 13 8 6
16 16 H 1.09005 * 109.87055 * 50.15116 * 15 13 8
17 17 C 1.54326 * 109.88801 * 171.16778 * 15 13 8
18 18 C 1.55156 * 102.94219 * 141.60973 * 17 15 13
19 19 C 1.54913 * 101.58196 * 324.49976 * 18 17 15
20 20 N 1.47027 * 109.88331 * 289.14128 * 15 13 8
21 21 C 1.36936 * 125.65073 * 61.59968 * 20 15 13
22 22 H 1.08001 * 119.99617 * 305.96632 * 21 20 15
23 23 C 1.38803 * 119.99890 * 125.96312 * 21 20 15
24 24 N 1.31623 * 120.00268 * 173.98252 * 23 21 20
25 25 Si 1.86802 * 120.00099 * 353.98482 * 23 21 20
26 26 H 1.48503 * 109.47263 * 94.97616 * 25 23 21
27 27 H 1.48501 * 109.47093 * 214.97381 * 25 23 21
28 28 H 1.48496 * 109.47285 * 334.97442 * 25 23 21
29 29 N 1.30712 * 108.94709 * 359.58883 * 4 3 2
30 30 N 1.34426 * 125.96513 * 179.66947 * 2 1 3
31 31 H 0.97003 * 126.82109 * 0.06767 * 30 2 1
32 32 H 1.09010 * 109.46871 * 270.33308 * 1 2 3
33 33 H 1.08998 * 109.47079 * 30.32632 * 1 2 3
34 34 H 1.08997 * 109.47634 * 150.33056 * 1 2 3
35 35 H 1.08996 * 109.46943 * 149.71499 * 5 4 3
36 36 H 1.08999 * 109.47130 * 29.71935 * 5 4 3
37 37 H 1.08999 * 109.58799 * 6.61537 * 9 8 6
38 38 H 1.09010 * 109.58509 * 246.19720 * 9 8 6
39 39 H 1.08995 * 109.49666 * 174.58256 * 10 9 8
40 40 H 1.09000 * 109.49580 * 294.64672 * 10 9 8
41 41 H 1.08999 * 109.46052 * 58.67506 * 11 10 9
42 42 H 1.09005 * 109.45851 * 178.63578 * 11 10 9
43 43 H 1.08993 * 109.47131 * 301.36322 * 12 11 10
44 44 H 1.09005 * 109.51993 * 181.30077 * 12 11 10
45 45 H 1.08992 * 110.72162 * 259.97419 * 17 15 13
46 46 H 1.08996 * 110.71365 * 23.07390 * 17 15 13
47 47 H 1.08995 * 111.00438 * 82.57560 * 18 17 15
48 48 H 1.09003 * 111.00455 * 206.38836 * 18 17 15
49 49 H 1.09006 * 110.36464 * 155.84665 * 19 18 17
50 50 H 1.08994 * 110.36763 * 278.17100 * 19 18 17
51 51 H 0.97000 * 120.00287 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2753 1.0591 0.0000
4 6 3.5552 0.6888 -0.0027
5 6 4.7372 1.6237 -0.0068
6 6 5.1320 1.9281 -1.4290
7 8 4.5142 1.4349 -2.3486
8 7 6.1711 2.7493 -1.6788
9 6 6.8502 3.4523 -0.5818
10 6 8.3513 3.1569 -0.6612
11 6 8.8664 3.5212 -2.0555
12 6 8.1495 2.6687 -3.1050
13 6 6.6461 2.9586 -3.0532
14 1 6.4628 3.9913 -3.3499
15 6 5.9082 2.0110 -4.0010
16 1 4.8335 2.0816 -3.8329
17 6 6.2353 2.3729 -5.4651
18 6 6.3420 0.9851 -6.1506
19 6 6.9753 0.1300 -5.0247
20 7 6.3593 0.6295 -3.7781
21 6 6.2309 -0.0735 -2.6100
22 1 6.6101 0.3394 -1.6869
23 6 5.6133 -1.3165 -2.6124
24 7 5.5944 -2.0442 -1.5158
25 14 4.8089 -1.9568 -4.1721
26 1 5.7669 -2.8252 -4.9025
27 1 3.5992 -2.7423 -3.8186
28 1 4.4212 -0.8122 -5.0350
29 7 3.6194 -0.6167 0.0043
30 7 2.2964 -1.0880 0.0063
31 1 2.0094 -2.0146 0.0107
32 1 -0.3633 0.0060 1.0278
33 1 -0.3633 0.8870 -0.5189
34 1 -0.3634 -0.8929 -0.5087
35 1 5.5739 1.1537 0.5099
36 1 4.4698 2.5497 0.5022
37 1 6.4590 3.1030 0.3737
38 1 6.6834 4.5254 -0.6769
39 1 8.8784 3.7482 0.0874
40 1 8.5237 2.0969 -0.4751
41 1 8.6719 4.5759 -2.2505
42 1 9.9392 3.3346 -2.1065
43 1 8.3239 1.6132 -2.8965
44 1 8.5331 2.9120 -4.0959
45 1 5.4300 2.9601 -5.9064
46 1 7.1814 2.9105 -5.5272
47 1 5.3566 0.6064 -6.4215
48 1 6.9946 1.0292 -7.0225
49 1 6.7361 -0.9238 -5.1686
50 1 8.0553 0.2748 -5.0002
51 1 5.1631 -2.9130 -1.5175
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001025229227.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:28:23
Heat of formation + Delta-G solvation = 100.007698 kcal
Electronic energy + Delta-G solvation = -34516.850960 eV
Core-core repulsion = 30454.633590 eV
Total energy + Delta-G solvation = -4062.217370 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-42.86114 -41.52723 -38.64186 -37.82848 -34.49699 -34.26102 -33.46886 -33.07053
-32.56299 -31.46562 -30.41666 -28.77623 -28.35822 -26.11910 -25.36076 -24.02468
-22.69388 -22.02709 -21.79241 -21.23785 -20.68649 -19.49524 -18.79175 -18.56201
-17.80721 -17.10577 -16.56398 -16.25556 -16.24616 -15.91613 -15.22859 -15.06872
-14.96731 -14.76357 -14.65388 -14.39105 -14.30728 -14.03997 -13.89597 -13.73576
-13.53714 -13.41807 -13.31122 -13.05163 -12.81470 -12.60409 -12.46466 -12.43714
-12.28080 -12.18059 -11.90087 -11.71437 -11.59865 -11.55836 -11.49314 -11.22622
-11.10531 -10.86288 -10.74900 -10.31626 -10.12320 -9.34195 -9.03940 -7.96320
-7.71706 -5.28389 0.95655 1.24216 1.30687 1.49422 1.93233 2.02220
2.27547 2.59367 2.65472 3.24689 3.50096 3.66885 3.83900 3.89183
4.03706 4.06053 4.14770 4.19488 4.23817 4.27695 4.30303 4.47813
4.50083 4.56391 4.60594 4.62493 4.72309 4.74248 4.82774 4.86535
4.91169 4.99026 5.04165 5.05291 5.08426 5.11735 5.20084 5.25334
5.29153 5.37021 5.43394 5.47072 5.57602 5.69593 5.74148 5.86523
6.18493 6.33950 6.41040 6.56927 6.94794 7.29012 7.38037 7.89519
7.92318 8.67253 9.33605
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.010445 B = 0.006164 C = 0.004688
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2679.975487 B = 4541.280661 C = 5970.653685
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C 0.262 3.738
3 N -0.563 5.563
4 C 0.223 3.777
5 C -0.034 4.034
6 C 0.527 3.473
7 O -0.508 6.508
8 N -0.613 5.613
9 C 0.106 3.894
10 C -0.129 4.129
11 C -0.110 4.110
12 C -0.116 4.116
13 C 0.151 3.849
14 H 0.076 0.924
15 C 0.126 3.874
16 H 0.065 0.935
17 C -0.120 4.120
18 C -0.127 4.127
19 C 0.117 3.883
20 N -0.599 5.599
21 C -0.179 4.179
22 H 0.049 0.951
23 C 0.018 3.982
24 N -0.904 5.904
25 Si 0.921 3.079
26 H -0.305 1.305
27 H -0.334 1.334
28 H -0.273 1.273
29 N -0.268 5.268
30 N -0.493 5.493
31 H 0.442 0.558
32 H 0.114 0.886
33 H 0.096 0.904
34 H 0.098 0.902
35 H 0.097 0.903
36 H 0.128 0.872
37 H 0.085 0.915
38 H 0.089 0.911
39 H 0.096 0.904
40 H 0.036 0.964
41 H 0.078 0.922
42 H 0.063 0.937
43 H 0.044 0.956
44 H 0.070 0.930
45 H 0.072 0.928
46 H 0.087 0.913
47 H 0.039 0.961
48 H 0.092 0.908
49 H 0.002 0.998
50 H 0.033 0.967
51 H 0.242 0.758
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.884 13.078 2.732 13.493
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.016 4.016
3 N -0.294 5.294
4 C -0.061 4.061
5 C -0.076 4.076
6 C 0.314 3.686
7 O -0.383 6.383
8 N -0.349 5.349
9 C -0.016 4.016
10 C -0.167 4.167
11 C -0.147 4.147
12 C -0.154 4.154
13 C 0.047 3.953
14 H 0.094 0.906
15 C 0.020 3.980
16 H 0.083 0.917
17 C -0.159 4.159
18 C -0.165 4.165
19 C -0.008 4.008
20 N -0.325 5.325
21 C -0.309 4.309
22 H 0.066 0.934
23 C -0.181 4.181
24 N -0.547 5.547
25 Si 0.757 3.243
26 H -0.234 1.234
27 H -0.265 1.265
28 H -0.198 1.198
29 N -0.095 5.095
30 N -0.212 5.212
31 H 0.287 0.713
32 H 0.132 0.868
33 H 0.115 0.885
34 H 0.116 0.884
35 H 0.115 0.885
36 H 0.146 0.854
37 H 0.103 0.897
38 H 0.107 0.893
39 H 0.114 0.886
40 H 0.055 0.945
41 H 0.097 0.903
42 H 0.082 0.918
43 H 0.063 0.937
44 H 0.088 0.912
45 H 0.091 0.909
46 H 0.105 0.895
47 H 0.058 0.942
48 H 0.111 0.889
49 H 0.020 0.980
50 H 0.050 0.950
51 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges -1.703 12.588 2.411 12.929
hybrid contribution -0.733 -2.254 -0.829 2.511
sum -2.435 10.334 1.583 10.734
Atomic orbital electron populations
1.20515 0.80424 1.05622 1.05902 1.25214 0.98198 0.82406 0.95821
1.70168 1.01486 1.30809 1.26982 1.23614 0.92869 0.90431 0.99159
1.19848 0.92913 0.97813 0.97069 1.19786 0.80886 0.77919 0.89966
1.90636 1.53957 1.48950 1.44713 1.47842 1.32428 1.46668 1.07945
1.21876 0.92540 0.97413 0.89772 1.21856 0.95673 1.00902 0.98312
1.21468 0.99320 0.99878 0.94033 1.21774 0.94237 1.00201 0.99236
1.21649 0.94244 0.98045 0.81405 0.90650 1.22063 0.98835 0.85257
0.91796 0.91734 1.22672 1.02163 0.95960 0.95074 1.22691 0.99730
0.96517 0.97591 1.21918 0.95741 0.94823 0.88284 1.44541 1.67137
1.11890 1.08952 1.17779 1.28772 0.98244 0.86097 0.93377 1.25928
0.97322 0.99358 0.95471 1.69843 1.46992 1.11269 1.26610 0.86134
0.76990 0.76563 0.84654 1.23361 1.26486 1.19843 1.78700 0.95795
1.12237 1.22740 1.48160 1.04577 1.10454 1.58030 0.71276 0.86774
0.88482 0.88371 0.88470 0.85394 0.89677 0.89324 0.88562 0.94546
0.90336 0.91816 0.93729 0.91197 0.90920 0.89481 0.94248 0.88921
0.98022 0.94956 0.94900
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.32 10.51 71.23 0.75 -0.57 16
2 C 0.26 8.98 8.24 138.22 1.14 10.11 16
3 N -0.56 -22.93 11.19 -179.73 -2.01 -24.94 16
4 C 0.22 9.94 6.63 138.63 0.92 10.86 16
5 C -0.03 -1.33 4.68 29.10 0.14 -1.20 16
6 C 0.53 22.50 4.68 87.66 0.41 22.91 16
7 O -0.51 -26.20 9.37 -3.01 -0.03 -26.23 16
8 N -0.61 -21.31 2.58 -795.04 -2.05 -23.37 16
9 C 0.11 2.65 6.35 86.36 0.55 3.19 16
10 C -0.13 -3.10 6.08 30.67 0.19 -2.91 16
11 C -0.11 -2.57 5.89 30.62 0.18 -2.39 16
12 C -0.12 -3.60 4.96 30.67 0.15 -3.45 16
13 C 0.15 5.10 2.58 44.98 0.12 5.22 16
14 H 0.08 2.18 8.13 -2.39 -0.02 2.16 16
15 C 0.13 5.17 2.31 45.34 0.10 5.28 16
16 H 0.07 3.22 5.26 -56.68 -0.30 2.92 16
17 C -0.12 -3.95 6.33 31.78 0.20 -3.75 16
18 C -0.13 -4.65 7.02 31.99 0.22 -4.42 16
19 C 0.12 5.23 6.15 86.79 0.53 5.77 16
20 N -0.60 -28.99 1.16 -667.42 -0.77 -29.76 16
21 C -0.18 -9.98 5.89 84.03 0.50 -9.48 16
22 H 0.05 2.91 6.15 -2.91 -0.02 2.89 16
23 C 0.02 1.06 5.44 84.86 0.46 1.52 16
24 N -0.90 -56.05 12.86 21.65 0.28 -55.77 16
25 Si 0.92 52.76 25.12 68.60 1.72 54.48 16
26 H -0.30 -17.31 7.07 99.48 0.70 -16.60 16
27 H -0.33 -19.84 7.11 99.48 0.71 -19.14 16
28 H -0.27 -15.74 6.11 99.48 0.61 -15.13 16
29 N -0.27 -12.93 11.69 -51.33 -0.60 -13.53 16
30 N -0.49 -19.01 7.45 -50.71 -0.38 -19.39 16
31 H 0.44 14.21 8.96 -213.10 -1.91 12.30 16
32 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16
33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16
34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16
35 H 0.10 3.88 7.92 -2.39 -0.02 3.86 16
36 H 0.13 3.96 7.71 -2.39 -0.02 3.94 16
37 H 0.08 1.97 5.93 -2.39 -0.01 1.96 16
38 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16
39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16
40 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16
41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16
42 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16
43 H 0.04 1.81 6.76 -2.39 -0.02 1.79 16
44 H 0.07 1.95 6.81 -2.38 -0.02 1.94 16
45 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16
46 H 0.09 2.38 6.46 -2.39 -0.02 2.36 16
47 H 0.04 1.60 7.38 -2.39 -0.02 1.58 16
48 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16
49 H 0.00 0.08 4.68 -2.38 -0.01 0.07 16
50 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16
51 H 0.24 14.96 8.31 -92.71 -0.77 14.18 16
Total: -1.00 -83.55 375.47 1.37 -82.18
By element:
Atomic # 1 Polarization: 20.97 SS G_CDS: -1.34 Total: 19.63 kcal
Atomic # 6 Polarization: 30.13 SS G_CDS: 6.56 Total: 36.69 kcal
Atomic # 7 Polarization: -161.21 SS G_CDS: -5.54 Total: -166.75 kcal
Atomic # 8 Polarization: -26.20 SS G_CDS: -0.03 Total: -26.23 kcal
Atomic # 14 Polarization: 52.76 SS G_CDS: 1.72 Total: 54.48 kcal
Total: -83.55 1.37 -82.18 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001025229227.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 182.189 kcal
(2) G-P(sol) polarization free energy of solvation -83.555 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.634 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.181 kcal
(6) G-S(sol) free energy of system = (1) + (5) 100.008 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds