Wall clock time and date at job start Wed Apr 1 2020 05:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30833 * 125.96307 * 2 1 4 4 C 1.33243 * 109.82932 * 180.12550 * 3 2 1 5 5 C 1.50703 * 125.52399 * 179.85274 * 4 3 2 6 6 C 1.50702 * 109.46837 * 274.57809 * 5 4 3 7 7 O 1.21272 * 120.00467 * 4.56205 * 6 5 4 8 8 N 1.34779 * 119.99503 * 184.56314 * 6 5 4 9 9 C 1.46928 * 120.63083 * 6.43940 * 8 6 5 10 10 C 1.53198 * 108.77667 * 233.58626 * 9 8 6 11 11 C 1.53047 * 109.31085 * 305.37098 * 10 9 8 12 12 C 1.53038 * 109.54213 * 61.36365 * 11 10 9 13 13 C 1.46927 * 120.62968 * 186.42463 * 8 6 5 14 14 H 1.09005 * 109.58232 * 246.19665 * 13 8 6 15 15 C 1.53003 * 109.70587 * 6.54919 * 13 8 6 16 16 H 1.09003 * 109.87084 * 302.28002 * 15 13 8 17 17 C 1.54320 * 109.87776 * 63.28750 * 15 13 8 18 18 C 1.55162 * 102.93961 * 141.61298 * 17 15 13 19 19 C 1.54903 * 101.57991 * 324.49751 * 18 17 15 20 20 N 1.47017 * 109.88486 * 181.09875 * 15 13 8 21 21 C 1.36939 * 125.64740 * 61.60122 * 20 15 13 22 22 H 1.07998 * 119.99920 * 10.93012 * 21 20 15 23 23 C 1.38817 * 119.99848 * 190.93926 * 21 20 15 24 24 N 1.31618 * 119.99608 * 8.83064 * 23 21 20 25 25 Si 1.86799 * 120.00037 * 188.83691 * 23 21 20 26 26 H 1.48504 * 109.46747 * 54.99126 * 25 23 21 27 27 H 1.48494 * 109.47046 * 174.99584 * 25 23 21 28 28 H 1.48501 * 109.46823 * 294.99729 * 25 23 21 29 29 N 1.30707 * 108.94539 * 359.58900 * 4 3 2 30 30 N 1.34434 * 125.96145 * 179.67396 * 2 1 3 31 31 H 0.97003 * 126.82245 * 0.06320 * 30 2 1 32 32 H 1.09000 * 109.46927 * 270.33073 * 1 2 3 33 33 H 1.08996 * 109.46966 * 30.32513 * 1 2 3 34 34 H 1.09001 * 109.47029 * 150.33544 * 1 2 3 35 35 H 1.08997 * 109.46546 * 154.58283 * 5 4 3 36 36 H 1.08993 * 109.47323 * 34.57980 * 5 4 3 37 37 H 1.08995 * 109.58902 * 353.37508 * 9 8 6 38 38 H 1.09002 * 109.58459 * 113.66428 * 9 8 6 39 39 H 1.08998 * 109.49533 * 65.31816 * 10 9 8 40 40 H 1.08994 * 109.49991 * 185.41632 * 10 9 8 41 41 H 1.08999 * 109.45694 * 301.33621 * 11 10 9 42 42 H 1.09003 * 109.45494 * 181.38598 * 11 10 9 43 43 H 1.08999 * 109.49724 * 178.68108 * 12 11 10 44 44 H 1.09000 * 109.49554 * 58.58223 * 12 11 10 45 45 H 1.09000 * 110.72763 * 259.97257 * 17 15 13 46 46 H 1.09003 * 110.72359 * 23.24936 * 17 15 13 47 47 H 1.08995 * 111.00474 * 82.57594 * 18 17 15 48 48 H 1.09006 * 111.00460 * 206.38794 * 18 17 15 49 49 H 1.09005 * 110.36815 * 155.84549 * 19 18 17 50 50 H 1.09007 * 110.37031 * 278.05900 * 19 18 17 51 51 H 0.97006 * 119.99388 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6887 -0.0027 5 6 4.7373 1.6236 -0.0068 6 6 5.0573 2.0225 -1.4244 7 8 4.3422 1.6574 -2.3333 8 7 6.1384 2.7849 -1.6821 9 6 7.0914 3.1179 -0.6144 10 6 7.2668 4.6390 -0.5667 11 6 7.6733 5.1453 -1.9526 12 6 6.5699 4.8177 -2.9612 13 6 6.3866 3.2987 -3.0360 14 1 7.2895 2.8412 -3.4406 15 6 5.1961 2.9695 -3.9390 16 1 5.0295 1.8924 -3.9545 17 6 3.9318 3.6887 -3.4234 18 6 3.2204 4.1221 -4.7324 19 6 4.4261 4.4611 -5.6440 20 7 5.4516 3.4589 -5.3016 21 6 6.4736 3.0519 -6.1172 22 1 7.0682 2.1911 -5.8492 23 6 6.7452 3.7458 -7.2884 24 7 6.1415 4.8900 -7.5304 25 14 7.9675 3.0555 -8.5209 26 1 7.5636 1.6776 -8.8998 27 1 7.9891 3.9156 -9.7312 28 1 9.3212 3.0246 -7.9112 29 7 3.6194 -0.6168 0.0043 30 7 2.2964 -1.0881 0.0062 31 1 2.0093 -2.0147 0.0106 32 1 -0.3633 0.0059 1.0277 33 1 -0.3633 0.8870 -0.5189 34 1 -0.3633 -0.8930 -0.5086 35 1 5.5991 1.1214 0.4327 36 1 4.4988 2.5133 0.5760 37 1 6.7067 2.7642 0.3421 38 1 8.0510 2.6436 -0.8203 39 1 6.3267 5.1045 -0.2707 40 1 8.0425 4.8933 0.1555 41 1 8.6005 4.6609 -2.2586 42 1 7.8227 6.2244 -1.9155 43 1 6.8496 5.1993 -3.9432 44 1 5.6363 5.2815 -2.6426 45 1 3.3046 3.0043 -2.8521 46 1 4.2003 4.5587 -2.8241 47 1 2.6343 3.3027 -5.1483 48 1 2.5968 5.0005 -4.5658 49 1 4.1449 4.3727 -6.6934 50 1 4.7904 5.4665 -5.4330 51 1 6.3311 5.3747 -8.3490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025229229.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:33 Heat of formation + Delta-G solvation = 105.304128 kcal Electronic energy + Delta-G solvation = -32897.109189 eV Core-core repulsion = 28835.121490 eV Total energy + Delta-G solvation = -4061.987699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.21700 -40.43105 -37.29515 -36.62566 -33.80674 -32.60410 -32.44013 -32.36132 -31.21696 -29.70374 -29.06484 -27.85540 -26.85268 -24.66241 -24.15510 -22.87588 -21.77309 -21.08815 -20.54525 -19.82099 -19.43323 -18.24407 -17.93973 -17.15106 -16.11326 -15.58470 -15.47261 -15.30169 -14.74283 -14.48834 -14.44969 -14.06505 -13.84570 -13.74939 -13.60338 -13.31183 -13.09579 -13.05864 -12.77099 -12.66695 -12.26251 -11.95633 -11.90570 -11.71535 -11.43087 -11.17612 -11.06946 -10.84836 -10.74522 -10.57922 -10.46126 -10.20464 -10.15660 -10.06504 -9.97725 -9.87459 -9.57689 -9.49825 -9.43179 -9.33811 -8.62096 -8.36592 -7.94558 -6.57857 -5.60746 -2.91619 1.50494 2.51358 2.73278 2.95643 3.40035 3.46646 3.51886 3.53716 3.86717 4.42104 4.61725 4.63235 4.75362 4.93850 5.03531 5.07991 5.11799 5.22600 5.28484 5.49808 5.51000 5.55390 5.55661 5.62573 5.65066 5.75543 5.90355 5.99013 6.05862 6.13437 6.15594 6.18393 6.21865 6.28979 6.35687 6.46789 6.59287 6.64106 6.72362 6.84166 6.93890 6.99313 7.06575 7.17368 7.21320 7.63459 7.71220 7.77946 7.84434 7.94563 8.03926 8.41424 8.64606 9.35506 9.98916 10.69695 11.51498 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.003628 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.233572 B = 7714.848295 C = 8751.473951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.282 3.718 3 N -0.525 5.525 4 C 0.257 3.743 5 C -0.050 4.050 6 C 0.508 3.492 7 O -0.499 6.499 8 N -0.604 5.604 9 C 0.106 3.894 10 C -0.133 4.133 11 C -0.120 4.120 12 C -0.122 4.122 13 C 0.139 3.861 14 H 0.068 0.932 15 C 0.165 3.835 16 H 0.074 0.926 17 C -0.125 4.125 18 C -0.150 4.150 19 C 0.177 3.823 20 N -0.595 5.595 21 C -0.221 4.221 22 H 0.071 0.929 23 C -0.007 4.007 24 N -0.918 5.918 25 Si 0.904 3.096 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.287 1.287 29 N -0.310 5.310 30 N -0.484 5.484 31 H 0.438 0.562 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.062 0.938 45 H 0.084 0.916 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.049 0.951 49 H 0.061 0.939 50 H 0.022 0.978 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 -5.914 20.891 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 N -0.255 5.255 4 C -0.027 4.027 5 C -0.093 4.093 6 C 0.294 3.706 7 O -0.374 6.374 8 N -0.339 5.339 9 C -0.017 4.017 10 C -0.171 4.171 11 C -0.158 4.158 12 C -0.160 4.160 13 C 0.035 3.965 14 H 0.086 0.914 15 C 0.058 3.942 16 H 0.091 0.909 17 C -0.162 4.162 18 C -0.188 4.188 19 C 0.052 3.948 20 N -0.319 5.319 21 C -0.350 4.350 22 H 0.088 0.912 23 C -0.203 4.203 24 N -0.565 5.565 25 Si 0.735 3.265 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.214 1.214 29 N -0.139 5.139 30 N -0.202 5.202 31 H 0.283 0.717 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.040 0.960 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.133 -6.057 20.176 21.940 hybrid contribution 0.591 -0.813 -0.664 1.205 sum -5.542 -6.870 19.512 21.416 Atomic orbital electron populations 1.20379 0.83780 1.05162 1.04266 1.24352 0.96566 0.82803 0.95912 1.70308 1.01267 1.29380 1.24496 1.23295 0.92687 0.89606 0.97067 1.20008 0.93433 0.98107 0.97744 1.19928 0.81089 0.79878 0.89678 1.90725 1.49043 1.52805 1.44807 1.48223 1.23775 1.51000 1.10904 1.21723 0.93489 0.96001 0.90517 1.21909 1.01719 0.95288 0.98164 1.21547 0.99310 1.00406 0.94516 1.21912 0.97868 0.95899 1.00345 1.22148 1.01622 0.93379 0.79336 0.91399 1.21610 0.89962 0.98749 0.83919 0.90917 1.23051 0.97437 0.98739 0.96970 1.22985 0.98822 0.99214 0.97807 1.21318 0.85253 0.91373 0.96897 1.44714 1.30422 1.46866 1.09922 1.18923 1.07460 1.07893 1.00679 0.91150 1.24765 0.99886 0.96431 0.99254 1.69963 1.45970 1.14437 1.26126 0.86319 0.80955 0.78088 0.81146 1.21282 1.21762 1.21393 1.77958 0.96710 1.12285 1.26910 1.47913 1.04290 1.09912 1.58122 0.71692 0.89178 0.88216 0.89960 0.87208 0.86509 0.90397 0.91479 0.91644 0.91391 0.92176 0.92314 0.89147 0.91956 0.89767 0.92996 0.92882 0.93202 0.92055 0.96009 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.51 36.01 0.38 -0.09 16 2 C 0.28 3.14 8.24 -155.69 -1.28 1.85 16 3 N -0.53 -7.62 11.19 -8.16 -0.09 -7.71 16 4 C 0.26 3.75 6.64 -156.86 -1.04 2.71 16 5 C -0.05 -0.63 4.76 -29.03 -0.14 -0.76 16 6 C 0.51 8.23 6.85 -10.98 -0.08 8.16 16 7 O -0.50 -10.07 9.30 5.56 0.05 -10.02 16 8 N -0.60 -9.31 2.94 -165.22 -0.48 -9.80 16 9 C 0.11 1.18 6.33 -3.71 -0.02 1.16 16 10 C -0.13 -1.45 6.08 -26.60 -0.16 -1.61 16 11 C -0.12 -1.69 5.88 -26.69 -0.16 -1.84 16 12 C -0.12 -2.23 4.96 -26.61 -0.13 -2.36 16 13 C 0.14 2.69 2.66 -67.60 -0.18 2.51 16 14 H 0.07 1.45 7.95 -51.93 -0.41 1.04 16 15 C 0.16 3.72 2.30 -66.96 -0.15 3.57 16 16 H 0.07 1.86 5.90 -52.10 -0.31 1.55 16 17 C -0.12 -2.59 4.90 -24.90 -0.12 -2.71 16 18 C -0.15 -3.26 7.09 -24.58 -0.17 -3.44 16 19 C 0.18 4.53 5.41 -2.53 -0.01 4.52 16 20 N -0.59 -15.61 2.58 -162.57 -0.42 -16.03 16 21 C -0.22 -6.26 9.78 -15.06 -0.15 -6.40 16 22 H 0.07 1.97 7.84 -52.49 -0.41 1.56 16 23 C -0.01 -0.20 5.40 -17.43 -0.09 -0.29 16 24 N -0.92 -27.32 10.69 55.49 0.59 -26.72 16 25 Si 0.90 22.64 29.56 -169.99 -5.03 17.61 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 N -0.31 -4.46 12.80 32.42 0.41 -4.05 16 30 N -0.48 -5.24 7.45 32.62 0.24 -4.99 16 31 H 0.44 2.98 8.96 -182.33 -1.63 1.35 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.11 1.08 7.43 -51.93 -0.39 0.70 16 36 H 0.12 1.20 8.10 -51.93 -0.42 0.78 16 37 H 0.08 0.64 5.91 -51.93 -0.31 0.33 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.09 2.02 7.85 -51.93 -0.41 1.61 16 44 H 0.06 1.15 5.73 -51.93 -0.30 0.85 16 45 H 0.08 1.81 5.57 -52.09 -0.29 1.52 16 46 H 0.05 1.04 5.46 -51.93 -0.28 0.75 16 47 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.06 1.75 6.97 -51.93 -0.36 1.39 16 50 H 0.02 0.59 8.06 -51.93 -0.42 0.18 16 51 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 387.07 15.07 5.83 5.83 Total: -1.00 -36.08 387.07 -11.70 -47.78 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -9.30 Total: 3.12 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -3.52 Total: 4.97 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: 0.26 Total: -69.29 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.05 Total: -10.02 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.08 -11.70 -47.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025229229.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.085 kcal (2) G-P(sol) polarization free energy of solvation -36.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds