Wall clock time and date at job start Wed Apr 1 2020 05:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30833 * 125.96307 * 2 1 4 4 C 1.33243 * 109.82932 * 180.12550 * 3 2 1 5 5 C 1.50703 * 125.52399 * 179.85274 * 4 3 2 6 6 C 1.50702 * 109.46837 * 274.57809 * 5 4 3 7 7 O 1.21272 * 120.00467 * 4.56205 * 6 5 4 8 8 N 1.34779 * 119.99503 * 184.56314 * 6 5 4 9 9 C 1.46928 * 120.63083 * 6.43940 * 8 6 5 10 10 C 1.53198 * 108.77667 * 233.58626 * 9 8 6 11 11 C 1.53047 * 109.31085 * 305.37098 * 10 9 8 12 12 C 1.53038 * 109.54213 * 61.36365 * 11 10 9 13 13 C 1.46927 * 120.62968 * 186.42463 * 8 6 5 14 14 H 1.09005 * 109.58232 * 246.19665 * 13 8 6 15 15 C 1.53003 * 109.70587 * 6.54919 * 13 8 6 16 16 H 1.09003 * 109.87084 * 302.28002 * 15 13 8 17 17 C 1.54320 * 109.87776 * 63.28750 * 15 13 8 18 18 C 1.55162 * 102.93961 * 141.61298 * 17 15 13 19 19 C 1.54903 * 101.57991 * 324.49751 * 18 17 15 20 20 N 1.47017 * 109.88486 * 181.09875 * 15 13 8 21 21 C 1.36939 * 125.64740 * 61.60122 * 20 15 13 22 22 H 1.07998 * 119.99920 * 10.93012 * 21 20 15 23 23 C 1.38817 * 119.99848 * 190.93926 * 21 20 15 24 24 N 1.31618 * 119.99608 * 8.83064 * 23 21 20 25 25 Si 1.86799 * 120.00037 * 188.83691 * 23 21 20 26 26 H 1.48504 * 109.46747 * 54.99126 * 25 23 21 27 27 H 1.48494 * 109.47046 * 174.99584 * 25 23 21 28 28 H 1.48501 * 109.46823 * 294.99729 * 25 23 21 29 29 N 1.30707 * 108.94539 * 359.58900 * 4 3 2 30 30 N 1.34434 * 125.96145 * 179.67396 * 2 1 3 31 31 H 0.97003 * 126.82245 * 0.06320 * 30 2 1 32 32 H 1.09000 * 109.46927 * 270.33073 * 1 2 3 33 33 H 1.08996 * 109.46966 * 30.32513 * 1 2 3 34 34 H 1.09001 * 109.47029 * 150.33544 * 1 2 3 35 35 H 1.08997 * 109.46546 * 154.58283 * 5 4 3 36 36 H 1.08993 * 109.47323 * 34.57980 * 5 4 3 37 37 H 1.08995 * 109.58902 * 353.37508 * 9 8 6 38 38 H 1.09002 * 109.58459 * 113.66428 * 9 8 6 39 39 H 1.08998 * 109.49533 * 65.31816 * 10 9 8 40 40 H 1.08994 * 109.49991 * 185.41632 * 10 9 8 41 41 H 1.08999 * 109.45694 * 301.33621 * 11 10 9 42 42 H 1.09003 * 109.45494 * 181.38598 * 11 10 9 43 43 H 1.08999 * 109.49724 * 178.68108 * 12 11 10 44 44 H 1.09000 * 109.49554 * 58.58223 * 12 11 10 45 45 H 1.09000 * 110.72763 * 259.97257 * 17 15 13 46 46 H 1.09003 * 110.72359 * 23.24936 * 17 15 13 47 47 H 1.08995 * 111.00474 * 82.57594 * 18 17 15 48 48 H 1.09006 * 111.00460 * 206.38794 * 18 17 15 49 49 H 1.09005 * 110.36815 * 155.84549 * 19 18 17 50 50 H 1.09007 * 110.37031 * 278.05900 * 19 18 17 51 51 H 0.97006 * 119.99388 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6887 -0.0027 5 6 4.7373 1.6236 -0.0068 6 6 5.0573 2.0225 -1.4244 7 8 4.3422 1.6574 -2.3333 8 7 6.1384 2.7849 -1.6821 9 6 7.0914 3.1179 -0.6144 10 6 7.2668 4.6390 -0.5667 11 6 7.6733 5.1453 -1.9526 12 6 6.5699 4.8177 -2.9612 13 6 6.3866 3.2987 -3.0360 14 1 7.2895 2.8412 -3.4406 15 6 5.1961 2.9695 -3.9390 16 1 5.0295 1.8924 -3.9545 17 6 3.9318 3.6887 -3.4234 18 6 3.2204 4.1221 -4.7324 19 6 4.4261 4.4611 -5.6440 20 7 5.4516 3.4589 -5.3016 21 6 6.4736 3.0519 -6.1172 22 1 7.0682 2.1911 -5.8492 23 6 6.7452 3.7458 -7.2884 24 7 6.1415 4.8900 -7.5304 25 14 7.9675 3.0555 -8.5209 26 1 7.5636 1.6776 -8.8998 27 1 7.9891 3.9156 -9.7312 28 1 9.3212 3.0246 -7.9112 29 7 3.6194 -0.6168 0.0043 30 7 2.2964 -1.0881 0.0062 31 1 2.0093 -2.0147 0.0106 32 1 -0.3633 0.0059 1.0277 33 1 -0.3633 0.8870 -0.5189 34 1 -0.3633 -0.8930 -0.5086 35 1 5.5991 1.1214 0.4327 36 1 4.4988 2.5133 0.5760 37 1 6.7067 2.7642 0.3421 38 1 8.0510 2.6436 -0.8203 39 1 6.3267 5.1045 -0.2707 40 1 8.0425 4.8933 0.1555 41 1 8.6005 4.6609 -2.2586 42 1 7.8227 6.2244 -1.9155 43 1 6.8496 5.1993 -3.9432 44 1 5.6363 5.2815 -2.6426 45 1 3.3046 3.0043 -2.8521 46 1 4.2003 4.5587 -2.8241 47 1 2.6343 3.3027 -5.1483 48 1 2.5968 5.0005 -4.5658 49 1 4.1449 4.3727 -6.6934 50 1 4.7904 5.4665 -5.4330 51 1 6.3311 5.3747 -8.3490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025229229.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:32 Heat of formation + Delta-G solvation = 81.561929 kcal Electronic energy + Delta-G solvation = -32898.138728 eV Core-core repulsion = 28835.121490 eV Total energy + Delta-G solvation = -4063.017238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.12566 -41.81024 -38.89493 -38.05797 -34.89669 -34.36458 -33.75780 -33.29889 -32.63686 -31.18505 -30.56941 -28.74453 -28.39331 -26.52935 -25.67744 -24.23655 -22.82425 -22.26897 -21.92921 -21.44897 -20.85983 -19.54252 -18.97764 -18.82512 -17.60800 -16.94168 -16.86206 -16.49669 -16.31519 -16.14206 -15.65548 -15.50609 -15.11527 -14.95703 -14.81076 -14.51224 -14.15914 -14.11315 -13.88680 -13.68950 -13.56721 -13.48998 -13.42408 -12.99818 -12.85012 -12.75051 -12.68527 -12.63480 -12.50563 -12.07523 -11.92496 -11.89625 -11.61970 -11.53184 -11.30363 -11.18208 -11.11350 -11.08008 -11.00373 -10.65146 -10.48839 -10.00992 -9.32845 -8.70679 -7.82486 -5.15597 0.61380 1.42430 1.45915 1.52398 1.68050 1.73367 1.79844 2.25620 2.52234 3.06081 3.33855 3.58593 3.65230 3.81593 3.93025 3.95729 4.01324 4.07309 4.18133 4.24103 4.33317 4.39896 4.40486 4.45256 4.50142 4.59211 4.72817 4.74384 4.78500 4.83122 4.87809 4.93018 5.05587 5.07478 5.09341 5.15447 5.25426 5.28970 5.31183 5.33153 5.38968 5.41436 5.47824 5.56870 5.62960 5.70548 5.76337 5.89568 6.24863 6.25294 6.62678 7.13247 7.13618 7.36337 7.85025 8.53959 9.28676 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.003628 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.233572 B = 7714.848295 C = 8751.473951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.284 3.716 3 N -0.563 5.563 4 C 0.240 3.760 5 C -0.040 4.040 6 C 0.504 3.496 7 O -0.547 6.547 8 N -0.602 5.602 9 C 0.098 3.902 10 C -0.123 4.123 11 C -0.117 4.117 12 C -0.110 4.110 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.165 3.835 16 H 0.043 0.957 17 C -0.103 4.103 18 C -0.140 4.140 19 C 0.187 3.813 20 N -0.611 5.611 21 C -0.232 4.232 22 H 0.066 0.934 23 C -0.059 4.059 24 N -0.945 5.945 25 Si 0.969 3.031 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.276 1.276 29 N -0.341 5.341 30 N -0.477 5.477 31 H 0.453 0.547 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.038 0.962 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.077 0.923 49 H 0.025 0.975 50 H 0.000 1.000 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 -6.418 24.253 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.006 3.994 3 N -0.293 5.293 4 C -0.043 4.043 5 C -0.082 4.082 6 C 0.292 3.708 7 O -0.425 6.425 8 N -0.336 5.336 9 C -0.023 4.023 10 C -0.161 4.161 11 C -0.155 4.155 12 C -0.148 4.148 13 C 0.046 3.954 14 H 0.057 0.943 15 C 0.060 3.940 16 H 0.060 0.940 17 C -0.141 4.141 18 C -0.178 4.178 19 C 0.062 3.938 20 N -0.336 5.336 21 C -0.361 4.361 22 H 0.084 0.916 23 C -0.252 4.252 24 N -0.593 5.593 25 Si 0.797 3.203 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.202 1.202 29 N -0.171 5.171 30 N -0.197 5.197 31 H 0.302 0.698 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.066 0.934 48 H 0.096 0.904 49 H 0.043 0.957 50 H 0.018 0.982 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.147 -6.597 23.607 25.270 hybrid contribution 0.536 -0.749 -1.692 1.926 sum -5.611 -7.346 21.915 23.785 Atomic orbital electron populations 1.20616 0.80398 1.06122 1.06154 1.25201 0.98235 0.82122 0.93861 1.70302 1.01689 1.31099 1.26201 1.23663 0.93429 0.89957 0.97251 1.20057 0.94066 0.99243 0.94860 1.20652 0.80322 0.78782 0.91041 1.90700 1.50590 1.54589 1.46635 1.48215 1.24648 1.50581 1.10124 1.22130 0.93014 0.96555 0.90640 1.21888 1.03197 0.94700 0.96347 1.21527 0.97264 1.01252 0.95411 1.21705 0.99417 0.94598 0.99105 1.21529 0.98455 0.94095 0.81305 0.94268 1.21549 0.92336 0.97006 0.83157 0.93977 1.22878 0.96237 0.98718 0.96239 1.22898 0.97506 1.00154 0.97282 1.21061 0.86690 0.90413 0.95638 1.44913 1.30116 1.46846 1.11753 1.19152 1.07846 1.07751 1.01400 0.91634 1.25518 1.01989 0.96825 1.00878 1.70153 1.47406 1.15514 1.26248 0.85300 0.79139 0.77204 0.78615 1.21002 1.21773 1.20249 1.77842 0.98771 1.12578 1.27917 1.47856 1.03332 1.10897 1.57592 0.69838 0.86643 0.88776 0.87421 0.84282 0.83752 0.86207 0.90748 0.91071 0.87680 0.92633 0.91327 0.94289 0.92130 0.89611 0.91861 0.93434 0.90414 0.95700 0.98172 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.51 71.24 0.75 0.04 16 2 C 0.28 5.84 8.24 138.22 1.14 6.98 16 3 N -0.56 -15.55 11.19 -179.72 -2.01 -17.56 16 4 C 0.24 6.67 6.64 138.63 0.92 7.59 16 5 C -0.04 -0.89 4.76 29.10 0.14 -0.76 16 6 C 0.50 15.74 6.85 87.66 0.60 16.34 16 7 O -0.55 -22.34 9.30 -3.01 -0.03 -22.37 16 8 N -0.60 -17.76 2.94 -795.01 -2.33 -20.09 16 9 C 0.10 1.82 6.33 86.36 0.55 2.36 16 10 C -0.12 -2.20 6.08 30.68 0.19 -2.02 16 11 C -0.12 -3.11 5.88 30.62 0.18 -2.93 16 12 C -0.11 -4.09 4.96 30.67 0.15 -3.94 16 13 C 0.15 6.00 2.66 44.97 0.12 6.12 16 14 H 0.04 1.76 7.95 -2.38 -0.02 1.74 16 15 C 0.17 7.80 2.30 45.34 0.10 7.90 16 16 H 0.04 2.28 5.90 -6.35 -0.04 2.25 16 17 C -0.10 -4.36 4.90 31.78 0.16 -4.20 16 18 C -0.14 -6.23 7.09 31.99 0.23 -6.00 16 19 C 0.19 10.14 5.41 86.85 0.47 10.61 16 20 N -0.61 -33.87 2.58 -668.26 -1.73 -35.59 16 21 C -0.23 -13.82 9.78 84.03 0.82 -13.00 16 22 H 0.07 3.86 7.84 -2.91 -0.02 3.84 16 23 C -0.06 -3.48 5.40 84.86 0.46 -3.03 16 24 N -0.94 -58.85 10.69 21.65 0.23 -58.62 16 25 Si 0.97 48.00 29.56 68.60 2.03 50.03 16 26 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 28 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 29 N -0.34 -9.44 12.80 -51.33 -0.66 -10.10 16 30 N -0.48 -9.63 7.45 -50.70 -0.38 -10.01 16 31 H 0.45 5.45 8.96 -213.09 -1.91 3.54 16 32 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.14 2.20 7.43 -2.39 -0.02 2.18 16 36 H 0.14 2.37 8.10 -2.39 -0.02 2.35 16 37 H 0.12 1.29 5.91 -2.39 -0.01 1.28 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.04 1.84 7.85 -2.39 -0.02 1.82 16 44 H 0.06 2.23 5.73 -2.39 -0.01 2.22 16 45 H 0.09 3.70 5.57 -6.11 -0.03 3.66 16 46 H 0.06 2.50 5.46 -2.39 -0.01 2.49 16 47 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16 49 H 0.02 1.50 6.97 -2.38 -0.02 1.48 16 50 H 0.00 0.02 8.06 -2.38 -0.02 0.00 16 51 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -85.42 387.07 1.10 -84.33 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -1.00 Total: 17.92 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 6.97 Total: 22.07 kcal Atomic # 7 Polarization: -145.11 SS G_CDS: -6.87 Total: -151.98 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.03 Total: -22.37 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -85.42 1.10 -84.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025229229.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.888 kcal (2) G-P(sol) polarization free energy of solvation -85.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds