Wall clock time and date at job start Wed Apr 1 2020 05:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36595 * 126.57716 * 2 1 4 4 C 1.47524 * 125.77321 * 0.04375 * 3 2 1 5 5 O 1.21596 * 119.99898 * 359.71447 * 4 3 2 6 6 N 1.34776 * 120.00299 * 179.71298 * 4 3 2 7 7 C 1.48658 * 128.35116 * 0.10093 * 6 4 3 8 8 C 1.54461 * 104.34829 * 138.18685 * 7 6 4 9 9 H 1.09003 * 112.70824 * 263.25944 * 8 7 6 10 10 C 1.54147 * 108.79696 * 138.54165 * 8 7 6 11 11 C 1.54841 * 104.34782 * 224.04300 * 10 8 7 12 12 C 1.54839 * 102.73093 * 38.22809 * 11 10 8 13 13 H 1.09001 * 110.56401 * 80.54334 * 12 11 10 14 14 N 1.46498 * 110.45611 * 203.05184 * 12 11 10 15 15 C 1.36929 * 120.00402 * 269.92813 * 14 12 11 16 16 H 1.07996 * 120.00161 * 359.97438 * 15 14 12 17 17 C 1.38815 * 120.00116 * 180.02562 * 15 14 12 18 18 N 1.31619 * 120.00261 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99854 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47332 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47243 * 119.99854 * 19 17 15 22 22 H 1.48501 * 109.46956 * 239.99666 * 19 17 15 23 23 C 1.54140 * 104.34814 * 321.77209 * 12 11 10 24 24 H 1.09001 * 111.89434 * 260.14583 * 23 12 11 25 25 C 1.48338 * 128.19857 * 180.02562 * 6 4 3 26 26 N 1.34403 * 108.45753 * 179.77880 * 3 2 1 27 27 N 1.28758 * 109.52276 * 0.22692 * 26 3 2 28 28 N 1.34816 * 126.58369 * 180.17418 * 2 1 3 29 29 C 1.46503 * 126.59321 * 359.97438 * 28 2 1 30 30 C 1.52994 * 109.47403 * 120.29374 * 29 28 2 31 31 C 1.53002 * 109.46646 * 240.29445 * 29 28 2 32 32 H 1.09003 * 109.47050 * 90.02506 * 1 2 3 33 33 H 1.09003 * 109.46995 * 210.01682 * 1 2 3 34 34 H 1.08998 * 109.47279 * 330.01936 * 1 2 3 35 35 H 1.09002 * 110.44628 * 19.47034 * 7 6 4 36 36 H 1.08999 * 110.55517 * 256.95973 * 7 6 4 37 37 H 1.09003 * 110.45809 * 105.32934 * 10 8 7 38 38 H 1.08995 * 110.45460 * 342.76035 * 10 8 7 39 39 H 1.08996 * 110.75940 * 279.92217 * 11 10 8 40 40 H 1.09000 * 110.75534 * 156.53745 * 11 10 8 41 41 H 0.97006 * 119.99852 * 89.92876 * 14 12 11 42 42 H 0.96994 * 120.00440 * 180.02562 * 18 17 15 43 43 H 1.09002 * 110.46861 * 103.05756 * 25 6 4 44 44 H 1.08997 * 110.46444 * 340.59722 * 25 6 4 45 45 H 1.09002 * 109.46807 * 0.29101 * 29 28 2 46 46 H 1.09005 * 109.47323 * 59.99546 * 30 29 28 47 47 H 1.08994 * 109.47277 * 179.97438 * 30 29 28 48 48 H 1.08999 * 109.47473 * 299.99962 * 30 29 28 49 49 H 1.08998 * 109.47034 * 60.00223 * 31 29 28 50 50 H 1.09007 * 109.46551 * 179.97438 * 31 29 28 51 51 H 1.08993 * 109.47144 * 299.99590 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0009 5 8 0.6859 2.7628 -0.0035 6 7 2.7816 3.4988 0.0067 7 6 4.2645 3.3952 0.0106 8 6 4.7270 4.4843 -0.9824 9 1 4.9212 4.0894 -1.9796 10 6 5.9608 5.1989 -0.3966 11 6 5.6917 6.7019 -0.6536 12 6 4.1694 6.8245 -0.3988 13 1 3.9641 6.8889 0.6698 14 7 3.6263 7.9936 -1.0947 15 6 3.5849 9.2081 -0.4635 16 1 3.9523 9.3040 0.5475 17 6 3.0698 10.3157 -1.1228 18 7 2.6215 10.1988 -2.3548 19 14 3.0140 11.9726 -0.2619 20 1 3.5745 11.8386 1.1066 21 1 3.8160 12.9575 -1.0315 22 1 1.6067 12.4390 -0.1766 23 6 3.5784 5.5266 -0.9837 24 1 3.1523 5.6844 -1.9744 25 6 2.5379 4.9620 0.0091 26 7 3.5984 0.6789 0.0049 27 7 3.6299 -0.6082 0.0032 28 7 2.3105 -1.0826 -0.0033 29 6 1.8865 -2.4849 -0.0070 30 6 2.4349 -3.1802 -1.2546 31 6 2.4237 -3.1833 1.2438 32 1 -0.3633 -0.0004 -1.0277 33 1 -0.3633 -0.8899 0.5141 34 1 -0.3634 0.8901 0.5135 35 1 4.5783 2.4092 -0.3321 36 1 4.6595 3.5951 1.0066 37 1 6.8664 4.8803 -0.9129 38 1 6.0421 5.0038 0.6727 39 1 5.9337 6.9672 -1.6827 40 1 6.2519 7.3201 0.0479 41 1 3.2959 7.9074 -2.0026 42 1 2.2619 10.9728 -2.8156 43 1 2.6991 5.3737 1.0054 44 1 1.5265 5.1805 -0.3336 45 1 0.7977 -2.5352 -0.0120 46 1 3.5238 -3.1298 -1.2497 47 1 2.1198 -4.2236 -1.2571 48 1 2.0523 -2.6827 -2.1457 49 1 2.0329 -2.6879 2.1326 50 1 2.1078 -4.2266 1.2413 51 1 3.5124 -3.1330 1.2488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026389596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:48 Heat of formation + Delta-G solvation = 73.977925 kcal Electronic energy + Delta-G solvation = -31022.228637 eV Core-core repulsion = 26958.882531 eV Total energy + Delta-G solvation = -4063.346105 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.50721 -39.98459 -38.25491 -36.79948 -35.09099 -33.40445 -33.14275 -31.38854 -30.87684 -29.43649 -28.29549 -27.95246 -27.82280 -25.03449 -24.41323 -24.04693 -22.86242 -22.11385 -20.61803 -20.14640 -19.13906 -18.89658 -17.55946 -17.04799 -16.53587 -16.37515 -15.97087 -15.49287 -14.98483 -14.96110 -14.43404 -14.21008 -14.11673 -13.78814 -13.65717 -13.53202 -13.37060 -13.03012 -12.95302 -12.87570 -12.80144 -12.52764 -12.38169 -12.13619 -12.09942 -11.91543 -11.56033 -11.54546 -11.16631 -11.09719 -10.76859 -10.73870 -10.55066 -10.45568 -10.23130 -10.14323 -10.11975 -9.84238 -9.80513 -9.60871 -9.32364 -8.83886 -8.52871 -6.89728 -5.72691 -3.00937 0.91738 1.61567 1.70253 3.02277 3.30105 3.46304 3.52036 3.54146 3.80342 3.94244 4.17956 4.27553 4.29483 4.47011 4.62666 4.74042 4.82506 4.88859 4.90535 4.98714 5.07602 5.09031 5.10177 5.18085 5.33032 5.37681 5.50679 5.51782 5.58315 5.60519 5.63211 5.67677 5.74970 5.84794 5.89851 6.04494 6.08310 6.13417 6.18446 6.20586 6.29261 6.36020 6.47631 6.52907 6.64254 6.78999 6.88276 7.11938 7.65598 7.75111 7.78148 8.22481 8.45965 9.57098 10.15546 10.49604 11.50009 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023356 B = 0.002180 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.551849 B =12840.444577 C =13553.201709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.121 3.879 3 C -0.097 4.097 4 C 0.621 3.379 5 O -0.543 6.543 6 N -0.609 5.609 7 C 0.098 3.902 8 C -0.101 4.101 9 H 0.083 0.917 10 C -0.116 4.116 11 C -0.142 4.142 12 C 0.183 3.817 13 H 0.057 0.943 14 N -0.721 5.721 15 C -0.236 4.236 16 H 0.071 0.929 17 C -0.015 4.015 18 N -0.932 5.932 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.108 4.108 24 H 0.088 0.912 25 C 0.116 3.884 26 N -0.202 5.202 27 N -0.068 5.068 28 N -0.358 5.358 29 C 0.144 3.856 30 C -0.163 4.163 31 C -0.163 4.163 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.064 0.936 50 H 0.082 0.918 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.620 -30.550 5.061 30.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.016 4.016 3 C -0.236 4.236 4 C 0.408 3.592 5 O -0.420 6.420 6 N -0.340 5.340 7 C -0.024 4.024 8 C -0.120 4.120 9 H 0.101 0.899 10 C -0.154 4.154 11 C -0.182 4.182 12 C 0.072 3.928 13 H 0.075 0.925 14 N -0.361 5.361 15 C -0.368 4.368 16 H 0.089 0.911 17 C -0.211 4.211 18 N -0.581 5.581 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.219 1.219 23 C -0.128 4.128 24 H 0.107 0.893 25 C -0.005 4.005 26 N -0.074 5.074 27 N -0.047 5.047 28 N -0.145 5.145 29 C 0.042 3.958 30 C -0.220 4.220 31 C -0.221 4.221 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.218 0.782 42 H 0.064 0.936 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.127 0.873 46 H 0.093 0.907 47 H 0.101 0.899 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.101 0.899 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.128 -30.777 5.199 31.213 hybrid contribution -1.019 1.061 0.054 1.472 sum -0.890 -29.716 5.254 30.190 Atomic orbital electron populations 1.20727 0.84784 1.05293 1.04689 1.21897 0.96215 0.86324 0.97210 1.21165 0.88981 0.95174 1.18264 1.16247 0.84557 0.81725 0.76675 1.90768 1.15450 1.83270 1.52553 1.48993 1.07476 1.06654 1.70871 1.23067 0.78571 1.01342 0.99462 1.22708 0.95612 0.95004 0.98717 0.89870 1.22400 0.96274 0.96709 1.00049 1.23211 0.99941 0.93479 1.01615 1.21151 0.90596 0.85469 0.95544 0.92490 1.42466 1.73391 1.04308 1.15903 1.19289 1.33797 0.86244 0.97443 0.91131 1.24740 1.01803 0.98050 0.96459 1.69667 1.47509 1.29523 1.11389 0.86143 0.77176 0.84503 0.78536 1.20576 1.21973 1.21942 1.23090 0.94513 0.95671 0.99529 0.89341 1.22670 1.00793 0.77316 0.99766 1.74589 1.18958 1.03825 1.10077 1.81916 0.96380 1.03506 1.22901 1.50612 1.06319 1.07164 1.50384 1.21644 1.00481 0.75308 0.98326 1.22153 1.03226 1.00857 0.95798 1.22164 1.03293 1.00858 0.95771 0.89024 0.90852 0.86845 0.88024 0.90905 0.92265 0.91762 0.91626 0.92282 0.78195 0.93610 0.90535 0.89867 0.87300 0.90654 0.89903 0.91671 0.91722 0.89909 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.40 36.01 0.34 -0.41 16 2 C 0.12 1.30 7.02 -81.87 -0.57 0.72 16 3 C -0.10 -1.33 6.88 -83.55 -0.58 -1.90 16 4 C 0.62 9.85 7.92 -12.48 -0.10 9.75 16 5 O -0.54 -9.56 15.00 5.28 0.08 -9.48 16 6 N -0.61 -9.41 3.32 -169.84 -0.56 -9.98 16 7 C 0.10 1.34 6.26 -2.08 -0.01 1.32 16 8 C -0.10 -1.43 3.95 -88.15 -0.35 -1.77 16 9 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 10 C -0.12 -1.59 6.36 -25.16 -0.16 -1.75 16 11 C -0.14 -2.46 6.57 -24.79 -0.16 -2.62 16 12 C 0.18 3.56 3.06 -66.37 -0.20 3.36 16 13 H 0.06 1.13 7.12 -51.93 -0.37 0.76 16 14 N -0.72 -17.85 5.20 -51.91 -0.27 -18.12 16 15 C -0.24 -6.52 9.96 -15.06 -0.15 -6.67 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 19 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 C -0.11 -1.82 3.66 -88.13 -0.32 -2.14 16 24 H 0.09 1.62 7.79 -51.93 -0.40 1.22 16 25 C 0.12 1.92 6.57 -2.24 -0.01 1.91 16 26 N -0.20 -2.76 9.39 32.85 0.31 -2.46 16 27 N -0.07 -0.83 13.67 60.35 0.82 0.00 16 28 N -0.36 -3.35 3.28 -50.40 -0.17 -3.51 16 29 C 0.14 0.74 3.68 -67.93 -0.25 0.49 16 30 C -0.16 -0.72 9.47 37.15 0.35 -0.36 16 31 C -0.16 -0.70 9.47 37.16 0.35 -0.35 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.34 7.20 -51.93 -0.37 -0.04 16 34 H 0.11 1.12 6.43 -51.93 -0.33 0.78 16 35 H 0.10 1.37 5.43 -51.93 -0.28 1.09 16 36 H 0.07 0.93 7.20 -51.93 -0.37 0.56 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.81 7.18 -51.93 -0.37 0.44 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.38 10.19 7.60 -40.82 -0.31 9.88 16 42 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 43 H 0.08 1.24 7.20 -51.93 -0.37 0.87 16 44 H 0.08 1.50 7.88 -51.93 -0.41 1.09 16 45 H 0.11 0.32 6.79 -51.93 -0.35 -0.03 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 51 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -33.40 403.03 -8.09 -41.49 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -8.15 Total: 6.98 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.93 Total: -0.94 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: 0.86 Total: -61.65 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.40 -8.09 -41.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026389596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.470 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds