Wall clock time and date at job start Wed Apr 1 2020 05:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36595 * 126.57716 * 2 1 4 4 C 1.47524 * 125.77321 * 0.04375 * 3 2 1 5 5 O 1.21596 * 119.99898 * 359.71447 * 4 3 2 6 6 N 1.34776 * 120.00299 * 179.71298 * 4 3 2 7 7 C 1.48658 * 128.35116 * 0.10093 * 6 4 3 8 8 C 1.54461 * 104.34829 * 138.18685 * 7 6 4 9 9 H 1.09003 * 112.70824 * 263.25944 * 8 7 6 10 10 C 1.54147 * 108.79696 * 138.54165 * 8 7 6 11 11 C 1.54841 * 104.34782 * 224.04300 * 10 8 7 12 12 C 1.54839 * 102.73093 * 38.22809 * 11 10 8 13 13 H 1.09001 * 110.56401 * 80.54334 * 12 11 10 14 14 N 1.46498 * 110.45611 * 203.05184 * 12 11 10 15 15 C 1.36929 * 120.00402 * 269.92813 * 14 12 11 16 16 H 1.07996 * 120.00161 * 359.97438 * 15 14 12 17 17 C 1.38815 * 120.00116 * 180.02562 * 15 14 12 18 18 N 1.31619 * 120.00261 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99854 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47332 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47243 * 119.99854 * 19 17 15 22 22 H 1.48501 * 109.46956 * 239.99666 * 19 17 15 23 23 C 1.54140 * 104.34814 * 321.77209 * 12 11 10 24 24 H 1.09001 * 111.89434 * 260.14583 * 23 12 11 25 25 C 1.48338 * 128.19857 * 180.02562 * 6 4 3 26 26 N 1.34403 * 108.45753 * 179.77880 * 3 2 1 27 27 N 1.28758 * 109.52276 * 0.22692 * 26 3 2 28 28 N 1.34816 * 126.58369 * 180.17418 * 2 1 3 29 29 C 1.46503 * 126.59321 * 359.97438 * 28 2 1 30 30 C 1.52994 * 109.47403 * 120.29374 * 29 28 2 31 31 C 1.53002 * 109.46646 * 240.29445 * 29 28 2 32 32 H 1.09003 * 109.47050 * 90.02506 * 1 2 3 33 33 H 1.09003 * 109.46995 * 210.01682 * 1 2 3 34 34 H 1.08998 * 109.47279 * 330.01936 * 1 2 3 35 35 H 1.09002 * 110.44628 * 19.47034 * 7 6 4 36 36 H 1.08999 * 110.55517 * 256.95973 * 7 6 4 37 37 H 1.09003 * 110.45809 * 105.32934 * 10 8 7 38 38 H 1.08995 * 110.45460 * 342.76035 * 10 8 7 39 39 H 1.08996 * 110.75940 * 279.92217 * 11 10 8 40 40 H 1.09000 * 110.75534 * 156.53745 * 11 10 8 41 41 H 0.97006 * 119.99852 * 89.92876 * 14 12 11 42 42 H 0.96994 * 120.00440 * 180.02562 * 18 17 15 43 43 H 1.09002 * 110.46861 * 103.05756 * 25 6 4 44 44 H 1.08997 * 110.46444 * 340.59722 * 25 6 4 45 45 H 1.09002 * 109.46807 * 0.29101 * 29 28 2 46 46 H 1.09005 * 109.47323 * 59.99546 * 30 29 28 47 47 H 1.08994 * 109.47277 * 179.97438 * 30 29 28 48 48 H 1.08999 * 109.47473 * 299.99962 * 30 29 28 49 49 H 1.08998 * 109.47034 * 60.00223 * 31 29 28 50 50 H 1.09007 * 109.46551 * 179.97438 * 31 29 28 51 51 H 1.08993 * 109.47144 * 299.99590 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0009 5 8 0.6859 2.7628 -0.0035 6 7 2.7816 3.4988 0.0067 7 6 4.2645 3.3952 0.0106 8 6 4.7270 4.4843 -0.9824 9 1 4.9212 4.0894 -1.9796 10 6 5.9608 5.1989 -0.3966 11 6 5.6917 6.7019 -0.6536 12 6 4.1694 6.8245 -0.3988 13 1 3.9641 6.8889 0.6698 14 7 3.6263 7.9936 -1.0947 15 6 3.5849 9.2081 -0.4635 16 1 3.9523 9.3040 0.5475 17 6 3.0698 10.3157 -1.1228 18 7 2.6215 10.1988 -2.3548 19 14 3.0140 11.9726 -0.2619 20 1 3.5745 11.8386 1.1066 21 1 3.8160 12.9575 -1.0315 22 1 1.6067 12.4390 -0.1766 23 6 3.5784 5.5266 -0.9837 24 1 3.1523 5.6844 -1.9744 25 6 2.5379 4.9620 0.0091 26 7 3.5984 0.6789 0.0049 27 7 3.6299 -0.6082 0.0032 28 7 2.3105 -1.0826 -0.0033 29 6 1.8865 -2.4849 -0.0070 30 6 2.4349 -3.1802 -1.2546 31 6 2.4237 -3.1833 1.2438 32 1 -0.3633 -0.0004 -1.0277 33 1 -0.3633 -0.8899 0.5141 34 1 -0.3634 0.8901 0.5135 35 1 4.5783 2.4092 -0.3321 36 1 4.6595 3.5951 1.0066 37 1 6.8664 4.8803 -0.9129 38 1 6.0421 5.0038 0.6727 39 1 5.9337 6.9672 -1.6827 40 1 6.2519 7.3201 0.0479 41 1 3.2959 7.9074 -2.0026 42 1 2.2619 10.9728 -2.8156 43 1 2.6991 5.3737 1.0054 44 1 1.5265 5.1805 -0.3336 45 1 0.7977 -2.5352 -0.0120 46 1 3.5238 -3.1298 -1.2497 47 1 2.1198 -4.2236 -1.2571 48 1 2.0523 -2.6827 -2.1457 49 1 2.0329 -2.6879 2.1326 50 1 2.1078 -4.2266 1.2413 51 1 3.5124 -3.1330 1.2488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026389596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:47 Heat of formation + Delta-G solvation = 52.514109 kcal Electronic energy + Delta-G solvation = -31023.159378 eV Core-core repulsion = 26958.882531 eV Total energy + Delta-G solvation = -4064.276846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.37312 -41.26406 -39.54121 -37.39020 -36.64636 -34.99946 -34.00935 -32.69509 -32.23880 -30.66464 -29.76985 -28.70888 -28.27255 -26.68009 -25.48223 -24.88795 -24.61752 -23.15558 -21.53784 -21.33142 -20.30209 -20.22312 -19.06712 -18.35297 -17.55713 -17.29512 -17.07997 -16.94635 -16.38148 -15.90052 -15.49826 -15.43853 -15.25987 -15.05278 -14.79470 -14.58320 -14.27918 -14.02235 -13.99737 -13.77682 -13.71015 -13.40526 -13.20864 -13.19074 -13.13240 -12.93652 -12.76336 -12.59307 -12.52971 -12.39995 -12.26840 -12.04832 -12.04302 -11.85253 -11.65553 -11.51243 -11.45324 -11.30450 -11.17098 -11.03542 -10.84221 -10.27987 -9.74838 -8.94617 -7.91360 -5.18905 0.09305 0.58222 1.02172 1.48143 1.48805 1.58656 1.85959 2.16254 2.58283 3.06543 3.24607 3.39474 3.46089 3.53159 3.61430 3.75826 3.78628 3.81327 3.97676 4.08425 4.11222 4.25633 4.32338 4.44913 4.49332 4.56480 4.57700 4.60962 4.63651 4.64135 4.68045 4.69662 4.75428 4.75817 4.84033 4.89453 4.99351 5.05306 5.10815 5.14195 5.18787 5.20649 5.27235 5.29413 5.43346 5.49588 5.54567 5.56171 5.64355 6.31164 6.47108 6.80023 7.06370 7.36657 8.14094 8.36265 9.32578 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023356 B = 0.002180 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.551849 B =12840.444577 C =13553.201709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.131 3.869 3 C -0.127 4.127 4 C 0.616 3.384 5 O -0.569 6.569 6 N -0.612 5.612 7 C 0.106 3.894 8 C -0.092 4.092 9 H 0.090 0.910 10 C -0.101 4.101 11 C -0.136 4.136 12 C 0.176 3.824 13 H 0.056 0.944 14 N -0.734 5.734 15 C -0.232 4.232 16 H 0.077 0.923 17 C -0.080 4.080 18 N -0.971 5.971 19 Si 0.970 3.030 20 H -0.265 1.265 21 H -0.295 1.295 22 H -0.297 1.297 23 C -0.102 4.102 24 H 0.068 0.932 25 C 0.121 3.879 26 N -0.218 5.218 27 N -0.082 5.082 28 N -0.344 5.344 29 C 0.131 3.869 30 C -0.159 4.159 31 C -0.159 4.159 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.371 0.629 42 H 0.249 0.751 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.141 0.859 46 H 0.058 0.942 47 H 0.113 0.887 48 H 0.056 0.944 49 H 0.058 0.942 50 H 0.112 0.888 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -33.495 6.392 34.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.008 4.008 3 C -0.266 4.266 4 C 0.405 3.595 5 O -0.449 6.449 6 N -0.343 5.343 7 C -0.016 4.016 8 C -0.111 4.111 9 H 0.108 0.892 10 C -0.139 4.139 11 C -0.177 4.177 12 C 0.068 3.932 13 H 0.074 0.926 14 N -0.373 5.373 15 C -0.364 4.364 16 H 0.095 0.905 17 C -0.272 4.272 18 N -0.623 5.623 19 Si 0.800 3.200 20 H -0.189 1.189 21 H -0.223 1.223 22 H -0.224 1.224 23 C -0.122 4.122 24 H 0.086 0.914 25 C -0.001 4.001 26 N -0.091 5.091 27 N -0.061 5.061 28 N -0.131 5.131 29 C 0.032 3.968 30 C -0.217 4.217 31 C -0.217 4.217 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.158 0.842 46 H 0.077 0.923 47 H 0.131 0.869 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.131 0.869 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.613 -33.790 6.573 34.429 hybrid contribution -1.187 1.798 -0.344 2.182 sum -0.574 -31.992 6.229 32.598 Atomic orbital electron populations 1.20822 0.82671 1.06148 1.05611 1.22266 0.97349 0.85841 0.95318 1.21021 0.89907 0.94648 1.21012 1.16608 0.84257 0.82665 0.75985 1.90743 1.16479 1.83912 1.53768 1.49044 1.08402 1.05933 1.70922 1.23116 0.77310 1.01277 0.99912 1.22682 0.94660 0.94256 0.99533 0.89188 1.22341 0.96719 0.93325 1.01554 1.23039 0.97678 0.96423 1.00523 1.21398 0.92103 0.84703 0.95039 0.92572 1.42668 1.73863 1.05217 1.15552 1.19670 1.31919 0.87240 0.97530 0.90476 1.25541 1.02736 1.01623 0.97315 1.69827 1.49399 1.30069 1.12988 0.85112 0.76643 0.80168 0.78118 1.18882 1.22266 1.22410 1.22907 0.95642 0.95364 0.98275 0.91382 1.22489 0.99398 0.78590 0.99657 1.74523 1.19176 1.04570 1.10782 1.81820 0.98086 1.02969 1.23198 1.50948 1.05127 1.08426 1.48595 1.22212 1.02416 0.73024 0.99120 1.22160 1.02086 1.02481 0.94965 1.22169 1.02156 1.02465 0.94913 0.87898 0.86933 0.88995 0.87453 0.89547 0.89930 0.89866 0.93332 0.92438 0.79725 0.94235 0.90118 0.92170 0.84153 0.92333 0.86885 0.92446 0.92303 0.86905 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 9.40 71.24 0.67 -0.60 16 2 C 0.13 2.63 7.02 41.72 0.29 2.92 16 3 C -0.13 -3.42 6.88 40.82 0.28 -3.14 16 4 C 0.62 19.79 7.92 86.69 0.69 20.48 16 5 O -0.57 -20.61 15.00 -4.02 -0.06 -20.67 16 6 N -0.61 -19.00 3.32 -809.51 -2.69 -21.69 16 7 C 0.11 2.74 6.26 86.46 0.54 3.28 16 8 C -0.09 -2.48 3.95 -9.19 -0.04 -2.52 16 9 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 10 C -0.10 -2.52 6.36 31.61 0.20 -2.32 16 11 C -0.14 -4.62 6.57 31.85 0.21 -4.41 16 12 C 0.18 6.91 3.06 46.01 0.14 7.05 16 13 H 0.06 2.21 7.12 -2.39 -0.02 2.20 16 14 N -0.73 -37.37 5.20 -318.16 -1.65 -39.02 16 15 C -0.23 -12.93 9.96 84.04 0.84 -12.10 16 16 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 17 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 18 N -0.97 -60.76 13.06 21.65 0.28 -60.48 16 19 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 20 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 22 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 23 C -0.10 -3.48 3.66 -9.18 -0.03 -3.52 16 24 H 0.07 2.62 7.79 -2.39 -0.02 2.60 16 25 C 0.12 4.11 6.57 86.53 0.57 4.68 16 26 N -0.22 -5.81 9.39 -49.99 -0.47 -6.28 16 27 N -0.08 -1.90 13.67 37.02 0.51 -1.40 16 28 N -0.34 -5.79 3.28 -313.38 -1.03 -6.81 16 29 C 0.13 0.95 3.68 44.99 0.17 1.12 16 30 C -0.16 -0.98 9.47 71.98 0.68 -0.30 16 31 C -0.16 -0.91 9.47 71.98 0.68 -0.23 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 0.60 7.20 -2.39 -0.02 0.58 16 34 H 0.09 1.75 6.43 -2.39 -0.02 1.73 16 35 H 0.11 2.75 5.43 -2.39 -0.01 2.74 16 36 H 0.09 2.02 7.20 -2.39 -0.02 2.00 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.82 7.18 -2.39 -0.02 1.80 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.37 20.57 7.60 -92.70 -0.70 19.86 16 42 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 43 H 0.08 2.65 7.20 -2.39 -0.02 2.63 16 44 H 0.06 2.30 7.88 -2.39 -0.02 2.28 16 45 H 0.14 0.18 6.79 -2.39 -0.02 0.16 16 46 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 47 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.11 -0.01 8.14 -2.38 -0.02 -0.03 16 51 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -75.35 403.03 3.51 -71.84 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.24 Total: 29.27 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 6.35 Total: 6.15 kcal Atomic # 7 Polarization: -130.63 SS G_CDS: -5.06 Total: -135.69 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.06 Total: -20.67 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -75.35 3.51 -71.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026389596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.357 kcal (2) G-P(sol) polarization free energy of solvation -75.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds