Wall clock time and date at job start Wed Apr 1 2020 05:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36593 * 126.57704 * 2 1 4 4 C 1.47515 * 125.77174 * 0.04482 * 3 2 1 5 5 O 1.21591 * 120.00237 * 359.71562 * 4 3 2 6 6 N 1.34780 * 120.00206 * 179.71082 * 4 3 2 7 7 C 1.49221 * 126.05599 * 0.04561 * 6 4 3 8 8 C 1.50344 * 104.86105 * 172.89868 * 7 6 4 9 9 H 1.09003 * 110.05373 * 278.93924 * 8 7 6 10 10 C 1.51007 * 125.54511 * 144.30640 * 8 7 6 11 11 C 1.56403 * 101.59252 * 203.99365 * 10 8 7 12 12 C 1.55943 * 105.79129 * 25.02110 * 11 10 8 13 13 H 1.09002 * 110.49104 * 248.87295 * 12 11 10 14 14 N 1.46499 * 110.60951 * 126.26476 * 12 11 10 15 15 C 1.36932 * 120.00100 * 90.20079 * 14 12 11 16 16 H 1.08001 * 120.00129 * 359.97438 * 15 14 12 17 17 C 1.38814 * 120.00210 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00353 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99658 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47636 * 90.00142 * 19 17 15 21 21 H 1.48499 * 109.46939 * 210.00164 * 19 17 15 22 22 H 1.48500 * 109.47189 * 330.00159 * 19 17 15 23 23 C 1.50292 * 104.15550 * 7.53644 * 12 11 10 24 24 H 1.08997 * 109.48120 * 80.28147 * 23 12 11 25 25 C 1.49698 * 126.06222 * 179.97438 * 6 4 3 26 26 N 1.34406 * 108.45577 * 179.77497 * 3 2 1 27 27 N 1.28765 * 109.52156 * 0.23513 * 26 3 2 28 28 N 1.34812 * 126.57901 * 180.17377 * 2 1 3 29 29 C 1.46499 * 126.59753 * 359.97438 * 28 2 1 30 30 C 1.52999 * 109.47564 * 120.29436 * 29 28 2 31 31 C 1.53004 * 109.47010 * 240.29410 * 29 28 2 32 32 H 1.08997 * 109.47190 * 90.02268 * 1 2 3 33 33 H 1.09001 * 109.46774 * 210.02272 * 1 2 3 34 34 H 1.08997 * 109.46992 * 330.01870 * 1 2 3 35 35 H 1.08999 * 110.36192 * 54.04990 * 7 6 4 36 36 H 1.08998 * 110.35634 * 291.74144 * 7 6 4 37 37 H 1.08991 * 111.00315 * 322.07199 * 10 8 7 38 38 H 1.09000 * 111.00003 * 85.92035 * 10 8 7 39 39 H 1.08996 * 110.18868 * 265.93657 * 11 10 8 40 40 H 1.09000 * 110.18309 * 144.09888 * 11 10 8 41 41 H 0.96997 * 119.99648 * 270.19211 * 14 12 11 42 42 H 0.96995 * 119.99871 * 179.97438 * 18 17 15 43 43 H 1.08993 * 110.84434 * 36.70890 * 25 6 4 44 44 H 1.08995 * 111.01973 * 273.17210 * 25 6 4 45 45 H 1.08999 * 109.47148 * 0.29062 * 29 28 2 46 46 H 1.08999 * 109.47193 * 59.99653 * 30 29 28 47 47 H 1.08994 * 109.47200 * 179.97438 * 30 29 28 48 48 H 1.09004 * 109.46902 * 299.99981 * 30 29 28 49 49 H 1.09007 * 109.47141 * 59.99724 * 31 29 28 50 50 H 1.08994 * 109.47309 * 179.97438 * 31 29 28 51 51 H 1.08999 * 109.46881 * 299.99816 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5026 0.0009 5 8 0.6860 2.7627 -0.0034 6 7 2.7816 3.4988 0.0067 7 6 4.2648 3.3352 0.0116 8 6 4.8067 4.7268 -0.1625 9 1 4.7830 5.0081 -1.2154 10 6 6.0611 5.2674 0.4815 11 6 5.7775 6.8055 0.4796 12 6 4.2250 6.9508 0.4580 13 1 3.8927 7.3540 -0.4986 14 7 3.7717 7.8049 1.5586 15 6 3.6548 9.1565 1.3728 16 1 3.8971 9.5930 0.4151 17 6 3.2247 9.9658 2.4154 18 7 3.1128 11.2650 2.2371 19 14 2.8049 9.2108 4.0716 20 1 4.0200 9.1819 4.9249 21 1 1.7540 10.0243 4.7343 22 1 2.3069 7.8261 3.8725 23 6 3.7219 5.5463 0.6402 24 1 3.7620 5.2800 1.6964 25 6 2.4808 4.9652 0.0079 26 7 3.5984 0.6789 0.0050 27 7 3.6299 -0.6084 0.0031 28 7 2.3104 -1.0826 -0.0033 29 6 1.8864 -2.4849 -0.0070 30 6 2.4348 -3.1803 -1.2546 31 6 2.4235 -3.1834 1.2438 32 1 -0.3633 -0.0004 -1.0276 33 1 -0.3633 -0.8898 0.5142 34 1 -0.3633 0.8901 0.5135 35 1 4.5790 2.6995 -0.8161 36 1 4.5968 2.9150 0.9610 37 1 6.1710 4.8917 1.4986 38 1 6.9406 5.0316 -0.1177 39 1 6.2108 7.2668 -0.4078 40 1 6.1857 7.2643 1.3801 41 1 3.5543 7.4129 2.4187 42 1 2.8120 11.8304 2.9655 43 1 1.6002 5.1800 0.6131 44 1 2.3517 5.3386 -1.0080 45 1 0.7976 -2.5352 -0.0120 46 1 3.5237 -3.1299 -1.2496 47 1 2.1197 -4.2237 -1.2571 48 1 2.0522 -2.6826 -2.1457 49 1 2.0328 -2.6880 2.1327 50 1 2.1077 -4.2266 1.2413 51 1 3.5124 -3.1330 1.2488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026389597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:52 Heat of formation + Delta-G solvation = 90.062690 kcal Electronic energy + Delta-G solvation = -31089.988506 eV Core-core repulsion = 27027.339889 eV Total energy + Delta-G solvation = -4062.648618 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.53087 -40.39880 -38.50668 -36.82020 -35.40705 -33.50416 -33.22225 -31.43800 -31.12644 -29.66002 -28.71680 -27.97543 -27.84903 -25.61201 -24.35138 -23.86616 -22.67693 -21.95235 -20.67192 -20.18855 -19.38826 -19.11867 -17.70122 -17.40586 -16.67725 -16.46034 -16.12289 -15.30864 -15.01820 -14.80835 -14.62691 -14.44409 -14.22198 -13.94062 -13.67102 -13.51942 -13.41402 -13.33318 -13.00536 -12.89524 -12.76139 -12.59519 -12.48689 -12.17267 -12.10120 -11.93620 -11.85145 -11.75593 -11.49323 -11.31713 -10.99517 -10.81574 -10.75033 -10.47718 -10.39705 -10.34873 -9.97606 -9.95539 -9.71817 -9.52851 -9.35234 -8.90400 -8.56553 -7.24578 -5.74466 -3.09939 0.88627 1.59387 1.67772 2.87163 3.24801 3.40574 3.44106 3.48381 3.76937 3.91011 4.10445 4.15565 4.26832 4.30085 4.48154 4.61904 4.71775 4.88346 4.89269 4.92597 5.05009 5.05422 5.09528 5.14928 5.30395 5.32087 5.37012 5.42947 5.48321 5.53834 5.55848 5.59539 5.64171 5.71619 5.77352 5.83464 5.93974 5.98777 6.10295 6.12000 6.16776 6.21833 6.27861 6.36633 6.43842 6.62913 6.76774 6.99317 7.50384 7.73901 8.02037 8.14403 8.44906 9.22960 9.95721 10.15266 11.43815 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.002363 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.527412 B =11845.245067 C =12461.657035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.121 3.879 3 C -0.100 4.100 4 C 0.617 3.383 5 O -0.542 6.542 6 N -0.610 5.610 7 C 0.132 3.868 8 C -0.128 4.128 9 H 0.082 0.918 10 C -0.098 4.098 11 C -0.142 4.142 12 C 0.202 3.798 13 H 0.065 0.935 14 N -0.744 5.744 15 C -0.242 4.242 16 H 0.091 0.909 17 C 0.004 3.996 18 N -0.934 5.934 19 Si 0.883 3.117 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.277 1.277 23 C -0.125 4.125 24 H 0.079 0.921 25 C 0.131 3.869 26 N -0.199 5.199 27 N -0.068 5.068 28 N -0.358 5.358 29 C 0.144 3.856 30 C -0.162 4.162 31 C -0.163 4.163 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.361 0.639 42 H 0.259 0.741 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.064 0.936 50 H 0.082 0.918 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 -32.593 -6.480 33.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.016 4.016 3 C -0.239 4.239 4 C 0.404 3.596 5 O -0.420 6.420 6 N -0.343 5.343 7 C 0.011 3.989 8 C -0.148 4.148 9 H 0.101 0.899 10 C -0.136 4.136 11 C -0.183 4.183 12 C 0.091 3.909 13 H 0.083 0.917 14 N -0.386 5.386 15 C -0.372 4.372 16 H 0.109 0.891 17 C -0.191 4.191 18 N -0.581 5.581 19 Si 0.713 3.287 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.203 1.203 23 C -0.145 4.145 24 H 0.097 0.903 25 C 0.011 3.989 26 N -0.072 5.072 27 N -0.048 5.048 28 N -0.145 5.145 29 C 0.042 3.958 30 C -0.220 4.220 31 C -0.221 4.221 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.194 0.806 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.127 0.873 46 H 0.093 0.907 47 H 0.101 0.899 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.101 0.899 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.806 -32.696 -6.570 33.359 hybrid contribution -1.204 -0.365 1.284 1.798 sum -2.010 -33.061 -5.285 33.541 Atomic orbital electron populations 1.20725 0.84804 1.05340 1.04622 1.21901 0.96208 0.86366 0.97158 1.21148 0.89062 0.95169 1.18501 1.16311 0.84684 0.81907 0.76735 1.90767 1.15470 1.83341 1.52386 1.49589 1.06934 1.06270 1.71550 1.21282 0.78509 0.96537 1.02608 1.22228 0.97283 0.94292 1.00948 0.89925 1.21754 0.95310 0.96564 0.99972 1.23745 0.98881 0.93355 1.02300 1.20064 0.91155 0.86862 0.92831 0.91705 1.42858 1.80586 1.04896 1.10271 1.19086 1.37748 0.81225 0.99166 0.89124 1.24669 1.01498 0.95232 0.97725 1.69699 1.53345 1.02891 1.32208 0.86574 0.78062 0.78491 0.85568 1.21164 1.21799 1.20281 1.22553 0.94008 0.97817 1.00124 0.90281 1.21523 0.98441 0.77591 1.01352 1.74725 1.18953 1.03859 1.09693 1.81924 0.96314 1.03461 1.23057 1.50626 1.06351 1.07165 1.50361 1.21642 1.00470 0.75318 0.98334 1.22151 1.03223 1.00861 0.95763 1.22166 1.03307 1.00866 0.95778 0.89063 0.90835 0.86856 0.90346 0.91061 0.91689 0.91919 0.92192 0.90813 0.80569 0.93101 0.89827 0.90629 0.87314 0.90655 0.89897 0.91710 0.91707 0.89895 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 9.40 36.01 0.34 -0.39 16 2 C 0.12 1.27 7.02 -81.87 -0.57 0.70 16 3 C -0.10 -1.33 6.86 -83.55 -0.57 -1.91 16 4 C 0.62 9.45 7.88 -12.48 -0.10 9.35 16 5 O -0.54 -9.21 15.05 5.29 0.08 -9.13 16 6 N -0.61 -9.04 3.43 -172.79 -0.59 -9.63 16 7 C 0.13 1.73 5.41 -3.86 -0.02 1.71 16 8 C -0.13 -1.68 2.77 -90.26 -0.25 -1.93 16 9 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 10 C -0.10 -1.27 6.72 -25.90 -0.17 -1.45 16 11 C -0.14 -2.31 6.74 -23.33 -0.16 -2.46 16 12 C 0.20 3.72 3.41 -67.71 -0.23 3.49 16 13 H 0.06 1.24 8.09 -51.93 -0.42 0.82 16 14 N -0.74 -17.26 4.91 -53.21 -0.26 -17.52 16 15 C -0.24 -6.74 10.44 -15.06 -0.16 -6.90 16 16 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 17 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 18 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 19 Si 0.88 22.30 27.73 -169.99 -4.71 17.59 16 20 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 23 C -0.12 -1.97 2.43 -90.33 -0.22 -2.19 16 24 H 0.08 1.33 7.90 -51.93 -0.41 0.92 16 25 C 0.13 2.05 6.81 -3.30 -0.02 2.02 16 26 N -0.20 -2.68 9.87 32.84 0.32 -2.36 16 27 N -0.07 -0.82 13.67 60.35 0.82 0.00 16 28 N -0.36 -3.29 3.28 -50.41 -0.17 -3.46 16 29 C 0.14 0.72 3.68 -67.93 -0.25 0.47 16 30 C -0.16 -0.67 9.47 37.16 0.35 -0.32 16 31 C -0.16 -0.71 9.47 37.16 0.35 -0.36 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.33 7.20 -51.93 -0.37 -0.04 16 34 H 0.11 1.09 6.43 -51.93 -0.33 0.76 16 35 H 0.08 0.99 7.35 -51.93 -0.38 0.61 16 36 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.34 7.98 -51.93 -0.41 0.92 16 41 H 0.36 8.37 5.52 -40.82 -0.23 8.15 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.11 0.31 6.79 -51.93 -0.35 -0.05 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 48 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 51 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 404.14 15.07 6.09 6.09 Total: -1.00 -34.08 404.14 -7.84 -41.92 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -8.42 Total: 5.18 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.78 Total: -0.12 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.91 Total: -61.53 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.08 -7.84 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026389597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.982 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds