Wall clock time and date at job start Wed Apr 1 2020 05:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36593 * 126.57704 * 2 1 4 4 C 1.47515 * 125.77174 * 0.04482 * 3 2 1 5 5 O 1.21591 * 120.00237 * 359.71562 * 4 3 2 6 6 N 1.34780 * 120.00206 * 179.71082 * 4 3 2 7 7 C 1.49221 * 126.05599 * 0.04561 * 6 4 3 8 8 C 1.50344 * 104.86105 * 172.89868 * 7 6 4 9 9 H 1.09003 * 110.05373 * 278.93924 * 8 7 6 10 10 C 1.51007 * 125.54511 * 144.30640 * 8 7 6 11 11 C 1.56403 * 101.59252 * 203.99365 * 10 8 7 12 12 C 1.55943 * 105.79129 * 25.02110 * 11 10 8 13 13 H 1.09002 * 110.49104 * 248.87295 * 12 11 10 14 14 N 1.46499 * 110.60951 * 126.26476 * 12 11 10 15 15 C 1.36932 * 120.00100 * 90.20079 * 14 12 11 16 16 H 1.08001 * 120.00129 * 359.97438 * 15 14 12 17 17 C 1.38814 * 120.00210 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00353 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99658 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47636 * 90.00142 * 19 17 15 21 21 H 1.48499 * 109.46939 * 210.00164 * 19 17 15 22 22 H 1.48500 * 109.47189 * 330.00159 * 19 17 15 23 23 C 1.50292 * 104.15550 * 7.53644 * 12 11 10 24 24 H 1.08997 * 109.48120 * 80.28147 * 23 12 11 25 25 C 1.49698 * 126.06222 * 179.97438 * 6 4 3 26 26 N 1.34406 * 108.45577 * 179.77497 * 3 2 1 27 27 N 1.28765 * 109.52156 * 0.23513 * 26 3 2 28 28 N 1.34812 * 126.57901 * 180.17377 * 2 1 3 29 29 C 1.46499 * 126.59753 * 359.97438 * 28 2 1 30 30 C 1.52999 * 109.47564 * 120.29436 * 29 28 2 31 31 C 1.53004 * 109.47010 * 240.29410 * 29 28 2 32 32 H 1.08997 * 109.47190 * 90.02268 * 1 2 3 33 33 H 1.09001 * 109.46774 * 210.02272 * 1 2 3 34 34 H 1.08997 * 109.46992 * 330.01870 * 1 2 3 35 35 H 1.08999 * 110.36192 * 54.04990 * 7 6 4 36 36 H 1.08998 * 110.35634 * 291.74144 * 7 6 4 37 37 H 1.08991 * 111.00315 * 322.07199 * 10 8 7 38 38 H 1.09000 * 111.00003 * 85.92035 * 10 8 7 39 39 H 1.08996 * 110.18868 * 265.93657 * 11 10 8 40 40 H 1.09000 * 110.18309 * 144.09888 * 11 10 8 41 41 H 0.96997 * 119.99648 * 270.19211 * 14 12 11 42 42 H 0.96995 * 119.99871 * 179.97438 * 18 17 15 43 43 H 1.08993 * 110.84434 * 36.70890 * 25 6 4 44 44 H 1.08995 * 111.01973 * 273.17210 * 25 6 4 45 45 H 1.08999 * 109.47148 * 0.29062 * 29 28 2 46 46 H 1.08999 * 109.47193 * 59.99653 * 30 29 28 47 47 H 1.08994 * 109.47200 * 179.97438 * 30 29 28 48 48 H 1.09004 * 109.46902 * 299.99981 * 30 29 28 49 49 H 1.09007 * 109.47141 * 59.99724 * 31 29 28 50 50 H 1.08994 * 109.47309 * 179.97438 * 31 29 28 51 51 H 1.08999 * 109.46881 * 299.99816 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5026 0.0009 5 8 0.6860 2.7627 -0.0034 6 7 2.7816 3.4988 0.0067 7 6 4.2648 3.3352 0.0116 8 6 4.8067 4.7268 -0.1625 9 1 4.7830 5.0081 -1.2154 10 6 6.0611 5.2674 0.4815 11 6 5.7775 6.8055 0.4796 12 6 4.2250 6.9508 0.4580 13 1 3.8927 7.3540 -0.4986 14 7 3.7717 7.8049 1.5586 15 6 3.6548 9.1565 1.3728 16 1 3.8971 9.5930 0.4151 17 6 3.2247 9.9658 2.4154 18 7 3.1128 11.2650 2.2371 19 14 2.8049 9.2108 4.0716 20 1 4.0200 9.1819 4.9249 21 1 1.7540 10.0243 4.7343 22 1 2.3069 7.8261 3.8725 23 6 3.7219 5.5463 0.6402 24 1 3.7620 5.2800 1.6964 25 6 2.4808 4.9652 0.0079 26 7 3.5984 0.6789 0.0050 27 7 3.6299 -0.6084 0.0031 28 7 2.3104 -1.0826 -0.0033 29 6 1.8864 -2.4849 -0.0070 30 6 2.4348 -3.1803 -1.2546 31 6 2.4235 -3.1834 1.2438 32 1 -0.3633 -0.0004 -1.0276 33 1 -0.3633 -0.8898 0.5142 34 1 -0.3633 0.8901 0.5135 35 1 4.5790 2.6995 -0.8161 36 1 4.5968 2.9150 0.9610 37 1 6.1710 4.8917 1.4986 38 1 6.9406 5.0316 -0.1177 39 1 6.2108 7.2668 -0.4078 40 1 6.1857 7.2643 1.3801 41 1 3.5543 7.4129 2.4187 42 1 2.8120 11.8304 2.9655 43 1 1.6002 5.1800 0.6131 44 1 2.3517 5.3386 -1.0080 45 1 0.7976 -2.5352 -0.0120 46 1 3.5237 -3.1299 -1.2496 47 1 2.1197 -4.2237 -1.2571 48 1 2.0522 -2.6826 -2.1457 49 1 2.0328 -2.6880 2.1327 50 1 2.1077 -4.2266 1.2413 51 1 3.5124 -3.1330 1.2488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026389597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:51 Heat of formation + Delta-G solvation = 67.544443 kcal Electronic energy + Delta-G solvation = -31090.964971 eV Core-core repulsion = 27027.339889 eV Total energy + Delta-G solvation = -4063.625082 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.36683 -41.62042 -39.71365 -37.39105 -36.89870 -35.12858 -34.01499 -33.06850 -32.27723 -30.78590 -30.07385 -28.67677 -28.28383 -27.11892 -25.23343 -24.77059 -24.50096 -23.04737 -21.59386 -21.28689 -20.54874 -20.32041 -19.52762 -18.38014 -17.72704 -17.30132 -17.20342 -16.59774 -16.34992 -15.97493 -15.84846 -15.37509 -15.24683 -15.02705 -14.90533 -14.50144 -14.37810 -14.24298 -14.04336 -14.00137 -13.75324 -13.44661 -13.25784 -13.21256 -13.19597 -13.11570 -12.90312 -12.62761 -12.54002 -12.44149 -12.31442 -12.25798 -12.14835 -11.91153 -11.81937 -11.58681 -11.39164 -11.18517 -11.11227 -11.01551 -10.90218 -10.26757 -9.72255 -9.28065 -8.00279 -5.32509 0.09143 0.59883 1.02124 1.37956 1.39946 1.47042 1.75835 2.16233 2.49111 2.89859 3.12429 3.26233 3.31939 3.49681 3.53161 3.65791 3.80289 3.85961 3.96779 3.97897 4.08407 4.15347 4.28748 4.41549 4.44268 4.49749 4.56344 4.57586 4.61882 4.63102 4.68889 4.71048 4.73322 4.74628 4.77235 4.85379 4.92081 4.93861 5.06958 5.10199 5.17574 5.18274 5.22219 5.23134 5.34644 5.51515 5.54366 5.55223 5.81373 6.24671 6.36236 6.80058 7.04795 7.09848 7.87006 8.04981 9.21266 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.002363 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.527412 B =11845.245067 C =12461.657035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.131 3.869 3 C -0.129 4.129 4 C 0.613 3.387 5 O -0.567 6.567 6 N -0.613 5.613 7 C 0.141 3.859 8 C -0.109 4.109 9 H 0.091 0.909 10 C -0.084 4.084 11 C -0.137 4.137 12 C 0.192 3.808 13 H 0.055 0.945 14 N -0.748 5.748 15 C -0.222 4.222 16 H 0.061 0.939 17 C -0.065 4.065 18 N -0.984 5.984 19 Si 0.950 3.050 20 H -0.279 1.279 21 H -0.298 1.298 22 H -0.258 1.258 23 C -0.124 4.124 24 H 0.072 0.928 25 C 0.133 3.867 26 N -0.216 5.216 27 N -0.084 5.084 28 N -0.345 5.345 29 C 0.132 3.868 30 C -0.158 4.158 31 C -0.160 4.160 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.363 0.637 42 H 0.256 0.744 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.141 0.859 46 H 0.057 0.943 47 H 0.112 0.888 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.112 0.888 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.634 -36.799 -6.482 37.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.008 4.008 3 C -0.269 4.269 4 C 0.401 3.599 5 O -0.446 6.446 6 N -0.346 5.346 7 C 0.020 3.980 8 C -0.128 4.128 9 H 0.110 0.890 10 C -0.123 4.123 11 C -0.177 4.177 12 C 0.084 3.916 13 H 0.073 0.927 14 N -0.391 5.391 15 C -0.353 4.353 16 H 0.079 0.921 17 C -0.256 4.256 18 N -0.635 5.635 19 Si 0.778 3.222 20 H -0.205 1.205 21 H -0.225 1.225 22 H -0.182 1.182 23 C -0.144 4.144 24 H 0.090 0.910 25 C 0.012 3.988 26 N -0.089 5.089 27 N -0.063 5.063 28 N -0.132 5.132 29 C 0.032 3.968 30 C -0.216 4.216 31 C -0.218 4.218 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.196 0.804 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.158 0.842 46 H 0.076 0.924 47 H 0.131 0.869 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.131 0.869 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.824 -36.993 -6.598 37.586 hybrid contribution -1.203 0.831 1.163 1.868 sum -2.027 -36.162 -5.436 36.624 Atomic orbital electron populations 1.20819 0.82667 1.06049 1.05684 1.22285 0.97358 0.85884 0.95312 1.21054 0.89909 0.94797 1.21091 1.16627 0.84410 0.82762 0.76115 1.90743 1.16407 1.83931 1.53568 1.49622 1.07723 1.05723 1.71542 1.21263 0.77368 0.96329 1.03016 1.22191 0.96088 0.93604 1.00965 0.89026 1.21681 0.96154 0.93493 1.00925 1.23571 0.96330 0.96087 1.01718 1.20308 0.93012 0.87472 0.90841 0.92733 1.42884 1.80960 1.03598 1.11658 1.19051 1.35381 0.83246 0.97645 0.92128 1.25436 1.02742 0.95650 1.01787 1.69872 1.55688 1.04550 1.33347 0.85473 0.77668 0.78303 0.80710 1.20485 1.22510 1.18248 1.22326 0.95468 0.96391 1.00186 0.90996 1.21412 0.97601 0.78553 1.01231 1.74673 1.19247 1.04572 1.10387 1.81830 0.98038 1.02988 1.23462 1.50955 1.05185 1.08425 1.48619 1.22198 1.02393 0.73089 0.99078 1.22154 1.02066 1.02450 0.94941 1.22172 1.02140 1.02480 0.94981 0.87656 0.87144 0.89055 0.89471 0.91013 0.91168 0.89108 0.91464 0.92721 0.80376 0.93497 0.91737 0.90128 0.84167 0.92360 0.86942 0.92289 0.92458 0.86913 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.40 71.24 0.67 -0.52 16 2 C 0.13 2.52 7.02 41.72 0.29 2.81 16 3 C -0.13 -3.36 6.86 40.81 0.28 -3.08 16 4 C 0.61 18.66 7.88 86.69 0.68 19.34 16 5 O -0.57 -19.41 15.05 -4.00 -0.06 -19.47 16 6 N -0.61 -17.87 3.43 -818.83 -2.81 -20.68 16 7 C 0.14 3.48 5.41 84.99 0.46 3.93 16 8 C -0.11 -2.64 2.77 -10.56 -0.03 -2.67 16 9 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 10 C -0.08 -1.97 6.72 31.13 0.21 -1.76 16 11 C -0.14 -4.28 6.74 32.80 0.22 -4.06 16 12 C 0.19 7.08 3.41 45.14 0.15 7.23 16 13 H 0.05 2.11 8.09 -2.39 -0.02 2.09 16 14 N -0.75 -34.88 4.91 -322.25 -1.58 -36.46 16 15 C -0.22 -12.65 10.44 84.03 0.88 -11.77 16 16 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 17 C -0.06 -3.87 5.50 84.86 0.47 -3.41 16 18 N -0.98 -63.77 13.97 21.65 0.30 -63.47 16 19 Si 0.95 46.76 27.73 68.60 1.90 48.66 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 21 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 22 H -0.26 -11.69 6.52 99.48 0.65 -11.04 16 23 C -0.12 -3.82 2.43 -10.60 -0.03 -3.85 16 24 H 0.07 2.36 7.90 -2.39 -0.02 2.34 16 25 C 0.13 4.14 6.81 85.08 0.58 4.72 16 26 N -0.22 -5.62 9.87 -50.00 -0.49 -6.12 16 27 N -0.08 -1.92 13.67 37.02 0.51 -1.42 16 28 N -0.34 -5.64 3.28 -313.39 -1.03 -6.67 16 29 C 0.13 0.91 3.68 44.99 0.17 1.07 16 30 C -0.16 -0.87 9.47 71.98 0.68 -0.19 16 31 C -0.16 -0.94 9.47 71.98 0.68 -0.26 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.11 0.55 7.20 -2.39 -0.02 0.53 16 34 H 0.09 1.67 6.43 -2.39 -0.02 1.65 16 35 H 0.09 2.05 7.35 -2.39 -0.02 2.03 16 36 H 0.07 1.79 8.07 -2.39 -0.02 1.77 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.94 7.98 -2.39 -0.02 1.92 16 41 H 0.36 16.61 5.52 -92.71 -0.51 16.10 16 42 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 43 H 0.06 2.24 8.09 -2.39 -0.02 2.22 16 44 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.14 0.13 6.79 -2.39 -0.02 0.11 16 46 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 48 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 50 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 51 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -77.20 404.14 3.47 -73.73 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.36 Total: 24.34 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 6.37 Total: 7.55 kcal Atomic # 7 Polarization: -129.70 SS G_CDS: -5.10 Total: -134.81 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.06 Total: -19.47 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.90 Total: 48.66 kcal Total: -77.20 3.47 -73.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026389597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.276 kcal (2) G-P(sol) polarization free energy of solvation -77.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds