Wall clock time and date at job start Wed Apr 1 2020 05:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33474 * 125.49428 * 2 1 4 4 C 1.30330 * 109.72386 * 179.97438 * 3 2 1 5 5 N 1.34674 * 108.04722 * 0.05694 * 4 3 2 6 6 N 1.30968 * 125.50045 * 179.97438 * 2 1 3 7 7 C 1.46292 * 125.04806 * 179.89486 * 5 4 3 8 8 C 1.53304 * 108.77851 * 343.00370 * 7 5 4 9 9 H 1.09006 * 109.46467 * 290.11660 * 8 7 5 10 10 C 1.50698 * 109.47192 * 170.12013 * 8 7 5 11 11 O 1.21277 * 120.00091 * 239.99794 * 10 8 7 12 12 N 1.34784 * 119.99653 * 60.00010 * 10 8 7 13 13 C 1.46496 * 119.99361 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.47156 * 274.99798 * 13 12 10 15 15 C 1.52997 * 109.47057 * 300.00015 * 14 13 12 16 16 C 1.52996 * 109.47705 * 300.00215 * 15 14 13 17 17 N 1.46495 * 109.47380 * 180.02562 * 16 15 14 18 18 C 1.36930 * 120.00287 * 85.00068 * 17 16 15 19 19 H 1.08000 * 120.00260 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00133 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00116 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99885 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46879 * 59.99942 * 22 20 18 24 24 H 1.48497 * 109.46992 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47138 * 300.00022 * 22 20 18 26 26 C 1.53003 * 109.47038 * 59.99773 * 16 15 14 27 27 C 1.53005 * 109.47338 * 300.00103 * 26 16 15 28 28 C 1.53163 * 109.48908 * 50.11611 * 8 7 5 29 29 C 1.50926 * 127.89962 * 180.10181 * 4 3 2 30 30 H 1.09000 * 109.47443 * 90.03134 * 1 2 3 31 31 H 1.09008 * 109.47089 * 210.02745 * 1 2 3 32 32 H 1.08997 * 109.47244 * 330.02602 * 1 2 3 33 33 H 1.09001 * 109.58984 * 102.79081 * 7 5 4 34 34 H 1.09002 * 109.58581 * 223.21781 * 7 5 4 35 35 H 0.96989 * 120.00190 * 0.02562 * 12 10 8 36 36 H 1.09005 * 109.47687 * 35.00066 * 13 12 10 37 37 H 1.08996 * 109.46627 * 60.00615 * 14 13 12 38 38 H 1.09002 * 109.46796 * 180.02562 * 14 13 12 39 39 H 1.08999 * 109.46721 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.46899 * 60.00117 * 15 14 13 41 41 H 1.09004 * 109.46862 * 299.99924 * 16 15 14 42 42 H 0.97001 * 119.99917 * 264.99746 * 17 16 15 43 43 H 0.96997 * 120.00389 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.47244 * 180.02562 * 26 16 15 45 45 H 1.09004 * 109.47170 * 60.00340 * 26 16 15 46 46 H 1.08994 * 109.47270 * 300.00275 * 27 26 16 47 47 H 1.08995 * 109.47126 * 179.97438 * 27 26 16 48 48 H 1.08992 * 109.50545 * 50.75353 * 28 8 7 49 49 H 1.08994 * 109.50637 * 170.89025 * 28 8 7 50 50 H 1.09007 * 109.71758 * 44.33308 * 29 4 3 51 51 H 1.08998 * 109.75834 * 283.70059 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7325 0.0005 5 7 3.5897 -0.6132 -0.0004 6 7 2.2675 -1.0662 0.0005 7 6 4.8198 -1.4050 -0.0023 8 6 5.9856 -0.5048 -0.4274 9 1 5.8854 -0.2554 -1.4839 10 6 7.2876 -1.2297 -0.2036 11 8 8.1193 -0.7649 0.5468 12 7 7.5279 -2.3947 -0.8375 13 6 8.7934 -3.0997 -0.6195 14 6 9.8598 -2.5364 -1.5611 15 6 9.4123 -2.7286 -3.0115 16 6 9.2200 -4.2201 -3.2927 17 7 8.7921 -4.4041 -4.6816 18 6 9.7245 -4.4698 -5.6823 19 1 10.7753 -4.3856 -5.4478 20 6 9.3190 -4.6436 -6.9985 21 7 8.0383 -4.7457 -7.2845 22 14 10.5909 -4.7325 -8.3637 23 1 11.5042 -5.8768 -8.1156 24 1 9.9053 -4.9205 -9.6675 25 1 11.3743 -3.4713 -8.3932 26 6 8.1537 -4.7834 -2.3511 27 6 8.6012 -4.5913 -0.9006 28 6 5.9678 0.7812 0.4044 29 6 4.7521 1.6266 0.0029 30 1 -0.3634 -0.0006 -1.0276 31 1 -0.3634 -0.8898 0.5143 32 1 -0.3633 0.8902 0.5134 33 1 5.0052 -1.7947 0.9986 34 1 4.7211 -2.2317 -0.7060 35 1 6.8629 -2.7662 -1.4380 36 1 9.1123 -2.9629 0.4139 37 1 9.9966 -1.4738 -1.3607 38 1 10.8013 -3.0613 -1.3991 39 1 10.1718 -2.3269 -3.6822 40 1 8.4706 -2.2040 -3.1737 41 1 10.1617 -4.7447 -3.1305 42 1 7.8483 -4.4794 -4.8924 43 1 7.7549 -4.8675 -8.2041 44 1 8.0170 -5.8461 -2.5511 45 1 7.2120 -4.2588 -2.5133 46 1 9.5428 -5.1159 -0.7384 47 1 7.8413 -4.9922 -0.2298 48 1 5.9023 0.5291 1.4628 49 1 6.8813 1.3465 0.2200 50 1 4.6129 2.4348 0.7210 51 1 4.9058 2.0421 -0.9930 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026532936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:19 Heat of formation + Delta-G solvation = 41.300550 kcal Electronic energy + Delta-G solvation = -31032.894449 eV Core-core repulsion = 26968.131346 eV Total energy + Delta-G solvation = -4064.763103 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.62909 -40.53158 -38.45539 -36.80825 -34.80087 -33.57972 -32.95483 -32.22321 -30.88786 -30.53910 -29.85939 -28.71324 -27.57426 -24.75476 -24.01702 -23.48792 -22.32174 -21.45667 -20.98148 -20.79946 -19.73133 -19.00035 -17.69697 -17.15515 -17.01388 -16.43319 -15.80366 -15.59304 -15.42013 -14.89177 -14.62401 -14.59768 -14.48336 -14.06391 -13.75413 -13.64240 -13.48890 -13.27529 -13.09458 -12.85431 -12.70576 -12.46381 -12.34612 -12.18289 -12.05410 -11.94318 -11.72900 -11.60194 -11.30795 -11.07620 -10.90605 -10.90043 -10.49288 -10.29854 -10.26289 -10.20271 -10.03156 -9.95849 -9.79963 -9.63212 -9.53601 -9.09857 -8.89593 -7.00646 -5.81302 -3.10001 1.34565 1.86527 2.39452 2.62349 2.93888 3.40355 3.45259 3.45894 3.60413 3.81376 4.09535 4.15013 4.39938 4.50054 4.53843 4.67410 4.78986 4.82463 4.90808 4.96353 4.98341 5.03626 5.11858 5.28796 5.29801 5.42876 5.47109 5.49596 5.51844 5.55471 5.61427 5.65996 5.68063 5.77189 5.82467 5.91504 5.99194 6.08823 6.17697 6.21228 6.26456 6.36820 6.42743 6.49110 6.54464 6.65873 6.90317 7.05294 7.32139 7.65482 7.88343 7.98786 8.37496 9.48533 10.06121 10.40208 11.41283 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011638 B = 0.002458 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.383394 B =11386.455147 C =12614.231788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.216 3.784 3 N -0.539 5.539 4 C 0.280 3.720 5 N -0.375 5.375 6 N -0.313 5.313 7 C 0.140 3.860 8 C -0.128 4.128 9 H 0.114 0.886 10 C 0.526 3.474 11 O -0.532 6.532 12 N -0.713 5.713 13 C 0.148 3.852 14 C -0.128 4.128 15 C -0.132 4.132 16 C 0.177 3.823 17 N -0.725 5.725 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.125 4.125 27 C -0.123 4.123 28 C -0.106 4.106 29 C -0.043 4.043 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.402 0.598 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.382 0.618 43 H 0.255 0.745 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.101 0.899 50 H 0.108 0.892 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.523 9.145 18.905 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 N -0.267 5.267 4 C 0.004 3.996 5 N -0.166 5.166 6 N -0.141 5.141 7 C 0.017 3.983 8 C -0.150 4.150 9 H 0.132 0.868 10 C 0.310 3.690 11 O -0.409 6.409 12 N -0.365 5.365 13 C 0.044 3.956 14 C -0.168 4.168 15 C -0.173 4.173 16 C 0.067 3.933 17 N -0.365 5.365 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.163 4.163 27 C -0.161 4.161 28 C -0.145 4.145 29 C -0.082 4.082 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.238 0.762 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.216 0.784 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.098 0.902 49 H 0.119 0.881 50 H 0.127 0.873 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.105 8.944 19.311 22.773 hybrid contribution 0.284 -0.313 -1.409 1.471 sum -7.821 8.631 17.902 21.358 Atomic orbital electron populations 1.20083 0.83821 1.03937 1.03788 1.24442 0.98285 0.85503 0.98295 1.70190 0.99840 1.30823 1.25855 1.24349 0.95066 0.83956 0.96234 1.50089 1.05553 1.05837 1.55138 1.77965 0.86399 1.22469 1.27316 1.21719 0.78522 0.93691 1.04359 1.21791 0.92399 0.96818 1.04042 0.86767 1.19915 0.87671 0.81148 0.80241 1.90719 1.47302 1.65856 1.36974 1.46220 1.20426 1.22862 1.47038 1.21034 0.83360 0.91463 0.99778 1.21929 0.97793 1.00795 0.96246 1.22221 1.01066 1.00325 0.93645 1.20226 0.95410 0.92380 0.85252 1.42406 1.06698 1.87118 1.00306 1.19183 0.89151 1.41855 0.86785 0.91291 1.24732 0.95980 1.02918 0.97305 1.69638 1.13204 1.56816 1.18568 0.86293 0.80493 0.77856 0.81705 1.21271 1.21705 1.21295 1.21822 0.99224 1.01699 0.93585 1.21810 1.02550 0.94225 0.97554 1.21572 0.98692 0.93958 1.00254 1.20468 0.86603 0.96008 1.05131 0.89801 0.90038 0.89616 0.88771 0.87899 0.76192 0.89758 0.92239 0.91295 0.92089 0.92956 0.93512 0.78437 0.93469 0.91379 0.92781 0.90223 0.91758 0.90172 0.88075 0.87337 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.00 0.38 -0.07 16 2 C 0.22 2.62 8.15 -156.43 -1.27 1.34 16 3 N -0.54 -6.79 11.18 -8.03 -0.09 -6.88 16 4 C 0.28 3.06 7.72 -155.78 -1.20 1.86 16 5 N -0.38 -4.22 4.04 -58.30 -0.24 -4.46 16 6 N -0.31 -4.09 12.74 32.50 0.41 -3.67 16 7 C 0.14 1.20 6.42 -4.00 -0.03 1.17 16 8 C -0.13 -1.05 2.54 -91.53 -0.23 -1.28 16 9 H 0.11 0.88 8.12 -51.93 -0.42 0.46 16 10 C 0.53 5.51 7.10 -10.98 -0.08 5.43 16 11 O -0.53 -7.21 15.50 5.56 0.09 -7.12 16 12 N -0.71 -7.27 4.14 -53.80 -0.22 -7.49 16 13 C 0.15 1.66 2.78 -67.93 -0.19 1.47 16 14 C -0.13 -1.69 5.60 -26.73 -0.15 -1.84 16 15 C -0.13 -2.16 5.34 -26.74 -0.14 -2.30 16 16 C 0.18 3.18 2.77 -67.93 -0.19 2.99 16 17 N -0.73 -17.14 5.12 -53.43 -0.27 -17.41 16 18 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 22 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.12 -1.74 5.22 -26.73 -0.14 -1.88 16 27 C -0.12 -1.33 5.61 -26.72 -0.15 -1.48 16 28 C -0.11 -0.79 4.68 -26.42 -0.12 -0.92 16 29 C -0.04 -0.31 6.33 -27.55 -0.17 -0.48 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.76 8.12 -51.93 -0.42 0.33 16 34 H 0.10 0.80 7.88 -51.93 -0.41 0.39 16 35 H 0.40 3.75 6.52 -40.82 -0.27 3.49 16 36 H 0.08 0.97 7.58 -51.93 -0.39 0.57 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.87 7.60 -51.93 -0.39 0.47 16 41 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.38 9.63 7.80 -40.82 -0.32 9.31 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.72 6.51 -51.93 -0.34 0.38 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 49 H 0.10 0.75 7.80 -51.93 -0.41 0.35 16 50 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 402.69 15.07 6.07 6.07 Total: -1.00 -34.17 402.69 -10.90 -45.07 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -8.41 Total: 8.75 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -3.94 Total: -3.01 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: 0.32 Total: -66.79 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.09 Total: -7.12 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.17 -10.90 -45.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026532936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.369 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds