Wall clock time and date at job start Wed Apr 1 2020 05:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33482 * 125.49938 * 2 1 4 4 C 1.30327 * 109.72620 * 179.97438 * 3 2 1 5 5 N 1.34678 * 108.04469 * 0.04488 * 4 3 2 6 6 N 1.30978 * 125.49984 * 179.97438 * 2 1 3 7 7 C 1.46304 * 125.04075 * 179.90519 * 5 4 3 8 8 C 1.53295 * 108.77928 * 342.98054 * 7 5 4 9 9 H 1.09001 * 109.47315 * 290.11658 * 8 7 5 10 10 C 1.50698 * 109.46897 * 170.12079 * 8 7 5 11 11 O 1.21283 * 120.00169 * 254.13965 * 10 8 7 12 12 N 1.34775 * 119.99832 * 74.13834 * 10 8 7 13 13 C 1.46927 * 120.62962 * 354.40768 * 12 10 8 14 14 C 1.53192 * 108.77776 * 126.41553 * 13 12 10 15 15 C 1.53035 * 109.31446 * 54.63088 * 14 13 12 16 16 C 1.53042 * 109.53821 * 298.64027 * 15 14 13 17 17 H 1.09001 * 109.49514 * 301.37620 * 16 15 14 18 18 N 1.46506 * 109.49422 * 181.31524 * 16 15 14 19 19 C 1.46497 * 120.00181 * 299.99714 * 18 16 15 20 20 C 1.36940 * 119.99760 * 120.00247 * 18 16 15 21 21 H 1.07999 * 120.00016 * 333.62032 * 20 18 16 22 22 C 1.38808 * 119.99575 * 153.90445 * 20 18 16 23 23 N 1.31613 * 120.00477 * 348.74283 * 22 20 18 24 24 Si 1.86802 * 119.99823 * 168.74287 * 22 20 18 25 25 H 1.48498 * 109.47216 * 89.99645 * 24 22 20 26 26 H 1.48496 * 109.47461 * 210.00306 * 24 22 20 27 27 H 1.48506 * 109.47005 * 330.00140 * 24 22 20 28 28 C 1.46922 * 120.63353 * 174.42845 * 12 10 8 29 29 C 1.53161 * 109.49484 * 50.11883 * 8 7 5 30 30 C 1.50925 * 127.89635 * 180.09172 * 4 3 2 31 31 H 1.08994 * 109.46896 * 90.02434 * 1 2 3 32 32 H 1.09003 * 109.46947 * 210.02605 * 1 2 3 33 33 H 1.08999 * 109.47230 * 330.02369 * 1 2 3 34 34 H 1.09004 * 109.58206 * 223.19854 * 7 5 4 35 35 H 1.09002 * 109.58244 * 102.77446 * 7 5 4 36 36 H 1.09000 * 109.59089 * 6.62406 * 13 12 10 37 37 H 1.09000 * 109.70508 * 246.27222 * 13 12 10 38 38 H 1.09005 * 109.49523 * 294.68052 * 14 13 12 39 39 H 1.08994 * 109.52611 * 174.60845 * 14 13 12 40 40 H 1.08999 * 109.46160 * 178.61414 * 15 14 13 41 41 H 1.09004 * 109.45655 * 58.65621 * 15 14 13 42 42 H 1.09002 * 109.47194 * 272.24930 * 19 18 16 43 43 H 1.09001 * 109.47008 * 32.24433 * 19 18 16 44 44 H 1.08995 * 109.47511 * 152.24485 * 19 18 16 45 45 H 0.97002 * 120.00538 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.58811 * 113.80067 * 28 12 10 47 47 H 1.09000 * 109.58495 * 353.37574 * 28 12 10 48 48 H 1.08996 * 109.50862 * 50.75614 * 29 8 7 49 49 H 1.09000 * 109.51153 * 170.89611 * 29 8 7 50 50 H 1.08995 * 109.72139 * 283.64641 * 30 4 3 51 51 H 1.09001 * 109.72088 * 44.25938 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0867 0.0000 4 6 3.5363 0.7324 0.0005 5 7 3.5897 -0.6133 -0.0001 6 7 2.2676 -1.0663 0.0005 7 6 4.8199 -1.4052 -0.0017 8 6 5.9855 -0.5052 -0.4274 9 1 5.8855 -0.2563 -1.4839 10 6 7.2876 -1.2300 -0.2033 11 8 8.0050 -0.9159 0.7228 12 7 7.6549 -2.2274 -1.0320 13 6 6.7438 -2.7015 -2.0827 14 6 7.4755 -2.6550 -3.4278 15 6 8.7799 -3.4483 -3.3220 16 6 9.6804 -2.8134 -2.2600 17 1 9.8839 -1.7767 -2.5282 18 7 10.9416 -3.5548 -2.1816 19 6 10.9344 -4.9779 -1.8340 20 6 12.1273 -2.9174 -2.4333 21 1 12.1480 -2.0494 -3.0756 22 6 13.3032 -3.3905 -1.8674 23 7 13.2572 -4.3048 -0.9218 24 14 14.9510 -2.7294 -2.4481 25 1 15.3257 -1.5472 -1.6313 26 1 15.9872 -3.7826 -2.2991 27 1 14.8500 -2.3328 -3.8756 28 6 8.9737 -2.8617 -0.9017 29 6 5.9680 0.7812 0.4037 30 6 4.7522 1.6266 0.0027 31 1 -0.3633 -0.0004 -1.0276 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3634 0.8902 0.5135 34 1 4.7211 -2.2321 -0.7050 35 1 5.0053 -1.7943 0.9994 36 1 5.8651 -2.0576 -2.1223 37 1 6.4371 -3.7253 -1.8688 38 1 7.6992 -1.6196 -3.6847 39 1 6.8446 -3.0934 -4.2010 40 1 9.2906 -3.4375 -4.2849 41 1 8.5570 -4.4777 -3.0409 42 1 10.9732 -5.0874 -0.7502 43 1 10.0230 -5.4399 -2.2134 44 1 11.8015 -5.4652 -2.2797 45 1 14.0790 -4.6351 -0.5262 46 1 8.8511 -3.8990 -0.5903 47 1 9.5665 -2.3235 -0.1620 48 1 5.9027 0.5298 1.4622 49 1 6.8814 1.3466 0.2188 50 1 4.9059 2.0408 -0.9937 51 1 4.6126 2.4356 0.7197 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027502815.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:33 Heat of formation + Delta-G solvation = 74.137093 kcal Electronic energy + Delta-G solvation = -31562.797982 eV Core-core repulsion = 27499.458779 eV Total energy + Delta-G solvation = -4063.339203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.63416 -40.43908 -37.92924 -36.70366 -35.21732 -33.54013 -32.63126 -32.13957 -31.36354 -30.12646 -29.01322 -28.39874 -26.05387 -25.54346 -24.52655 -23.87822 -22.96748 -21.77898 -21.03598 -20.23343 -19.26577 -18.73785 -17.48129 -17.03975 -16.81546 -16.30035 -15.82214 -15.52720 -15.08413 -14.71907 -14.57622 -14.44699 -14.24004 -14.06869 -13.73538 -13.70333 -13.42744 -13.24490 -12.87335 -12.77238 -12.69397 -12.57613 -12.34160 -12.16374 -12.07196 -11.87647 -11.57243 -11.32018 -11.17977 -11.09765 -10.86236 -10.69779 -10.46268 -10.44212 -10.27890 -10.25572 -9.97719 -9.95336 -9.83242 -9.71199 -9.52561 -8.64425 -8.45042 -6.77518 -5.80192 -3.27915 1.34698 1.87812 2.55477 2.61962 2.96840 3.35244 3.41673 3.42934 3.61951 3.89793 4.08050 4.14115 4.41333 4.43418 4.54238 4.63196 4.75611 4.84247 4.87219 4.97933 5.02676 5.12361 5.21442 5.25441 5.31694 5.36767 5.42571 5.46516 5.47036 5.56156 5.58397 5.66172 5.77578 5.81524 5.89618 6.02053 6.09071 6.14581 6.20611 6.28494 6.40539 6.49527 6.54562 6.71049 6.85269 6.89266 7.30048 7.46895 7.62828 7.75766 7.88257 8.14915 8.36596 9.17408 9.79105 10.29325 11.25856 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.002325 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.056168 B =12040.171340 C =12552.517498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.215 3.785 3 N -0.539 5.539 4 C 0.281 3.719 5 N -0.375 5.375 6 N -0.315 5.315 7 C 0.137 3.863 8 C -0.125 4.125 9 H 0.108 0.892 10 C 0.521 3.479 11 O -0.527 6.527 12 N -0.602 5.602 13 C 0.101 3.899 14 C -0.131 4.131 15 C -0.134 4.134 16 C 0.168 3.832 17 H 0.065 0.935 18 N -0.589 5.589 19 C 0.160 3.840 20 C -0.259 4.259 21 H 0.067 0.933 22 C 0.006 3.994 23 N -0.904 5.904 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.098 3.902 29 C -0.108 4.108 30 C -0.042 4.042 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.021 0.979 43 H -0.002 1.002 44 H 0.052 0.948 45 H 0.254 0.746 46 H 0.063 0.937 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.125 7.147 -1.288 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.067 4.067 3 N -0.268 5.268 4 C 0.005 3.995 5 N -0.165 5.165 6 N -0.144 5.144 7 C 0.015 3.985 8 C -0.147 4.147 9 H 0.126 0.874 10 C 0.306 3.694 11 O -0.403 6.403 12 N -0.335 5.335 13 C -0.022 4.022 14 C -0.170 4.170 15 C -0.174 4.174 16 C 0.059 3.941 17 H 0.083 0.917 18 N -0.311 5.311 19 C 0.016 3.984 20 C -0.389 4.389 21 H 0.084 0.916 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.735 3.265 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.025 4.025 29 C -0.147 4.147 30 C -0.081 4.081 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.039 0.961 43 H 0.016 0.984 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.111 0.889 48 H 0.101 0.899 49 H 0.117 0.883 50 H 0.120 0.880 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.874 6.699 -0.695 22.887 hybrid contribution 1.182 0.070 -0.291 1.219 sum -20.692 6.769 -0.986 21.793 Atomic orbital electron populations 1.20071 0.83863 1.03965 1.03662 1.24437 0.98252 0.85549 0.98419 1.70194 0.99838 1.30805 1.25950 1.24363 0.95038 0.83978 0.96125 1.50139 1.05543 1.05884 1.54949 1.77946 0.86451 1.22524 1.27438 1.21856 0.78338 0.93624 1.04696 1.21751 0.92802 0.96792 1.03395 0.87352 1.19918 0.86828 0.80208 0.82466 1.90752 1.54215 1.65220 1.30101 1.48346 1.17832 1.35177 1.32143 1.21890 0.92193 1.00040 0.88096 1.21902 0.97800 1.01559 0.95714 1.22085 0.94724 0.99421 1.01126 1.20652 0.86502 0.95953 0.91000 0.91693 1.43901 1.00700 1.05442 1.81048 1.20770 0.96280 0.83327 0.98054 1.19166 0.84354 1.12155 1.23193 0.91562 1.25115 0.98567 0.99194 0.96436 1.70038 1.26610 1.31965 1.26145 0.86257 0.83706 0.78127 0.78417 1.21296 1.21564 1.20489 1.22616 0.80794 0.97402 1.01688 1.21590 0.98514 0.93841 1.00712 1.20470 0.86632 0.96028 1.05017 0.89905 0.90064 0.89615 0.87769 0.88634 0.90575 0.91015 0.91633 0.91145 0.91586 0.92173 0.96065 0.98395 0.92961 0.93593 0.91873 0.88896 0.89857 0.88263 0.87953 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.22 2.52 8.15 -156.42 -1.27 1.25 16 3 N -0.54 -6.69 11.18 -8.03 -0.09 -6.78 16 4 C 0.28 3.10 7.72 -155.78 -1.20 1.90 16 5 N -0.37 -4.28 4.04 -58.29 -0.24 -4.52 16 6 N -0.31 -4.03 12.74 32.51 0.41 -3.61 16 7 C 0.14 1.32 6.24 -4.00 -0.02 1.30 16 8 C -0.12 -1.19 1.68 -91.54 -0.15 -1.35 16 9 H 0.11 0.87 7.16 -51.93 -0.37 0.50 16 10 C 0.52 7.11 6.91 -10.99 -0.08 7.03 16 11 O -0.53 -9.39 15.50 5.55 0.09 -9.30 16 12 N -0.60 -8.28 2.97 -172.77 -0.51 -8.79 16 13 C 0.10 1.04 5.51 -3.71 -0.02 1.02 16 14 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 15 C -0.13 -2.04 5.11 -26.69 -0.14 -2.18 16 16 C 0.17 3.22 2.75 -67.81 -0.19 3.03 16 17 H 0.06 1.31 7.89 -51.93 -0.41 0.90 16 18 N -0.59 -14.07 2.81 -173.35 -0.49 -14.55 16 19 C 0.16 3.75 7.96 59.85 0.48 4.23 16 20 C -0.26 -6.92 9.54 -15.06 -0.14 -7.06 16 21 H 0.07 1.74 7.84 -52.49 -0.41 1.33 16 22 C 0.01 0.16 5.08 -17.43 -0.09 0.07 16 23 N -0.90 -25.89 10.85 55.49 0.60 -25.29 16 24 Si 0.91 21.53 29.57 -169.99 -5.03 16.51 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 C 0.10 1.77 5.77 -3.72 -0.02 1.75 16 29 C -0.11 -0.96 4.59 -26.43 -0.12 -1.08 16 30 C -0.04 -0.32 6.33 -27.56 -0.17 -0.50 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.89 6.12 -51.93 -0.32 0.57 16 35 H 0.10 0.96 8.12 -51.93 -0.42 0.54 16 36 H 0.08 0.61 4.53 -51.93 -0.24 0.37 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.92 6.73 -51.93 -0.35 0.57 16 42 H 0.02 0.54 7.70 -51.93 -0.40 0.14 16 43 H 0.00 -0.05 6.46 -51.93 -0.34 -0.38 16 44 H 0.05 1.34 7.01 -51.93 -0.36 0.98 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.06 1.16 7.51 -51.93 -0.39 0.77 16 47 H 0.09 2.01 7.04 -51.93 -0.37 1.64 16 48 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 49 H 0.10 0.88 8.04 -51.93 -0.42 0.46 16 50 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -33.56 392.76 -10.41 -43.97 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -8.15 Total: -1.31 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -2.93 Total: 7.76 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -0.31 Total: -63.54 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.56 -10.41 -43.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027502815.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.104 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds