Wall clock time and date at job start Wed Apr 1 2020 05:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30842 * 126.47033 * 2 1 4 4 N 1.28908 * 109.74314 * 179.97438 * 3 2 1 5 5 C 1.29841 * 109.47937 * 359.97201 * 4 3 2 6 6 N 1.34698 * 126.46468 * 180.02562 * 2 1 3 7 7 C 1.46253 * 128.85023 * 0.15539 * 6 2 1 8 8 C 1.53314 * 108.73070 * 162.84967 * 7 6 2 9 9 H 1.09006 * 109.45289 * 290.30041 * 8 7 6 10 10 C 1.50704 * 109.45243 * 170.34661 * 8 7 6 11 11 O 1.21273 * 120.00300 * 274.39106 * 10 8 7 12 12 N 1.34784 * 119.99785 * 94.38837 * 10 8 7 13 13 C 1.46922 * 120.63233 * 354.30928 * 12 10 8 14 14 C 1.53187 * 108.77545 * 233.58715 * 13 12 10 15 15 C 1.53042 * 109.34143 * 305.34612 * 14 13 12 16 16 C 1.53112 * 109.49878 * 61.34709 * 15 14 13 17 17 H 1.08997 * 109.51617 * 58.63343 * 16 15 14 18 18 N 1.46500 * 109.48507 * 178.70557 * 16 15 14 19 19 C 1.46500 * 120.00389 * 59.85286 * 18 16 15 20 20 C 1.36946 * 119.99794 * 239.85398 * 18 16 15 21 21 H 1.07996 * 119.99721 * 34.15866 * 20 18 16 22 22 C 1.38809 * 120.00087 * 214.15491 * 20 18 16 23 23 N 1.31620 * 119.99834 * 355.26247 * 22 20 18 24 24 Si 1.86796 * 120.00045 * 175.25781 * 22 20 18 25 25 H 1.48499 * 109.47029 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47008 * 120.00287 * 24 22 20 27 27 H 1.48500 * 109.47038 * 240.00278 * 24 22 20 28 28 C 1.46922 * 120.62803 * 174.28311 * 12 10 8 29 29 C 1.53144 * 109.56729 * 50.32595 * 8 7 6 30 30 C 1.50804 * 128.52372 * 180.08767 * 5 4 3 31 31 H 1.08996 * 109.47224 * 89.97279 * 1 2 3 32 32 H 1.08998 * 109.47479 * 209.97843 * 1 2 3 33 33 H 1.09000 * 109.46971 * 329.97318 * 1 2 3 34 34 H 1.08992 * 109.57528 * 43.08317 * 7 6 2 35 35 H 1.09008 * 109.60910 * 282.63007 * 7 6 2 36 36 H 1.08998 * 109.59088 * 113.79813 * 13 12 10 37 37 H 1.09001 * 109.58694 * 353.37018 * 13 12 10 38 38 H 1.09008 * 109.50297 * 65.31289 * 14 13 12 39 39 H 1.09008 * 109.50167 * 185.37998 * 14 13 12 40 40 H 1.08998 * 109.46396 * 181.40313 * 15 14 13 41 41 H 1.09003 * 109.46154 * 301.36552 * 15 14 13 42 42 H 1.09003 * 109.47182 * 94.92655 * 19 18 16 43 43 H 1.08999 * 109.47147 * 214.92787 * 19 18 16 44 44 H 1.09001 * 109.46956 * 334.92898 * 19 18 16 45 45 H 0.96998 * 120.00387 * 180.02562 * 23 22 20 46 46 H 1.08998 * 109.59090 * 246.19833 * 28 12 10 47 47 H 1.08997 * 109.58968 * 6.49002 * 28 12 10 48 48 H 1.08998 * 109.49686 * 50.50185 * 29 8 7 49 49 H 1.08997 * 109.50015 * 170.60274 * 29 8 7 50 50 H 1.08996 * 109.72702 * 44.47903 * 30 5 4 51 51 H 1.08995 * 109.73108 * 283.79440 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6812 0.0005 5 6 3.5815 -0.6157 0.0015 6 7 2.3075 -1.0833 -0.0005 7 6 1.9367 -2.4980 -0.0042 8 6 3.1549 -3.3251 -0.4314 9 1 3.3619 -3.1480 -1.4869 10 6 2.8687 -4.7888 -0.2149 11 8 3.0670 -5.2913 0.8709 12 7 2.3923 -5.5394 -1.2279 13 6 2.0296 -4.9219 -2.5108 14 6 0.5920 -5.3192 -2.8602 15 6 0.4686 -6.8445 -2.8405 16 6 0.7865 -7.3648 -1.4360 17 1 0.1005 -6.9162 -0.7176 18 7 0.6383 -8.8221 -1.4096 19 6 1.4556 -9.6577 -2.2927 20 6 -0.2645 -9.4031 -0.5594 21 1 -1.1943 -8.9020 -0.3345 22 6 0.0156 -10.6362 0.0131 23 7 1.1045 -11.2900 -0.3322 24 14 -1.1527 -11.3676 1.2738 25 1 -2.2945 -10.4421 1.4861 26 1 -1.6596 -12.6732 0.7800 27 1 -0.4332 -11.5693 2.5571 28 6 2.2264 -6.9907 -1.0705 29 6 4.3717 -2.9145 0.4029 30 6 4.8051 -1.4973 0.0042 31 1 -0.3633 0.0005 -1.0276 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3633 0.8897 0.5143 34 1 1.1201 -2.6597 -0.7078 35 1 1.6246 -2.7971 0.9965 36 1 2.7056 -5.2739 -3.2900 37 1 2.0987 -3.8373 -2.4268 38 1 -0.0924 -4.8894 -2.1286 39 1 0.3428 -4.9469 -3.8540 40 1 -0.5473 -7.1302 -3.1132 41 1 1.1707 -7.2749 -3.5545 42 1 2.3407 -9.9975 -1.7547 43 1 0.8741 -10.5206 -2.6172 44 1 1.7604 -9.0767 -3.1632 45 1 1.3001 -12.1519 0.0676 46 1 2.9184 -7.5115 -1.7322 47 1 2.4278 -7.2715 -0.0368 48 1 4.1098 -2.9311 1.4608 49 1 5.1903 -3.6104 0.2193 50 1 5.5303 -1.1179 0.7241 51 1 5.2484 -1.5146 -0.9914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027690694.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:26 Heat of formation + Delta-G solvation = 63.999888 kcal Electronic energy + Delta-G solvation = -31928.364956 eV Core-core repulsion = 27864.586170 eV Total energy + Delta-G solvation = -4063.778786 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.57728 -40.49240 -38.01006 -36.80870 -35.20131 -34.40684 -32.58824 -31.83703 -31.41112 -30.83380 -28.88052 -27.63473 -26.07186 -25.91188 -24.74829 -23.84084 -23.00314 -21.86025 -21.59114 -20.37288 -19.40595 -18.63586 -17.65390 -17.12236 -16.84828 -16.63966 -15.82724 -15.44442 -15.21844 -14.83665 -14.59637 -14.47838 -14.23718 -14.14029 -13.91135 -13.66569 -13.59943 -13.36438 -12.98196 -12.83905 -12.72573 -12.61434 -12.46800 -12.26921 -11.94421 -11.77156 -11.63163 -11.41813 -11.21651 -11.10976 -10.89033 -10.75092 -10.54559 -10.49007 -10.46395 -10.39394 -10.27652 -10.02503 -9.85989 -9.72297 -9.20465 -8.62646 -8.48914 -6.70824 -5.84098 -3.38896 1.54225 2.02915 2.52213 2.62611 2.92441 3.32524 3.40345 3.41455 3.79774 3.97687 4.00866 4.10096 4.20563 4.40062 4.52059 4.60637 4.66237 4.72566 4.82177 4.93116 4.95584 5.04518 5.08430 5.17807 5.26098 5.30956 5.37138 5.42726 5.43770 5.47115 5.57590 5.61520 5.70509 5.72862 5.78489 5.85243 5.94516 5.98686 6.10504 6.24784 6.37350 6.51049 6.57144 6.68917 6.82356 6.87133 7.30869 7.43249 7.69292 7.75115 8.11416 8.38398 8.51259 9.17250 9.75103 10.29445 11.20049 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016709 B = 0.002583 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.316290 B =10836.206711 C =10902.973066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.179 3.821 3 N -0.300 5.300 4 N -0.292 5.292 5 C 0.176 3.824 6 N -0.468 5.468 7 C 0.117 3.883 8 C -0.124 4.124 9 H 0.105 0.895 10 C 0.518 3.482 11 O -0.528 6.528 12 N -0.602 5.602 13 C 0.104 3.896 14 C -0.130 4.130 15 C -0.135 4.135 16 C 0.170 3.830 17 H 0.064 0.936 18 N -0.591 5.591 19 C 0.159 3.841 20 C -0.265 4.265 21 H 0.065 0.935 22 C 0.016 3.984 23 N -0.899 5.899 24 Si 0.901 3.099 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.287 1.287 28 C 0.098 3.902 29 C -0.109 4.109 30 C -0.032 4.032 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.031 0.969 43 H 0.041 0.959 44 H -0.003 1.003 45 H 0.254 0.746 46 H 0.063 0.937 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.105 0.895 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.821 18.205 -5.098 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 N -0.141 5.141 4 N -0.131 5.131 5 C -0.091 4.091 6 N -0.159 5.159 7 C -0.007 4.007 8 C -0.145 4.145 9 H 0.123 0.877 10 C 0.304 3.696 11 O -0.404 6.404 12 N -0.335 5.335 13 C -0.019 4.019 14 C -0.169 4.169 15 C -0.174 4.174 16 C 0.061 3.939 17 H 0.083 0.917 18 N -0.313 5.313 19 C 0.015 3.985 20 C -0.394 4.394 21 H 0.083 0.917 22 C -0.184 4.184 23 N -0.542 5.542 24 Si 0.730 3.270 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.214 1.214 28 C -0.026 4.026 29 C -0.147 4.147 30 C -0.072 4.072 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.015 0.985 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.111 0.889 48 H 0.103 0.897 49 H 0.110 0.890 50 H 0.123 0.877 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.388 19.139 -4.466 19.943 hybrid contribution -0.991 -1.932 0.543 2.238 sum 2.397 17.207 -3.924 17.811 Atomic orbital electron populations 1.20235 0.83630 1.04724 1.04161 1.24687 0.97112 0.82694 1.04336 1.74485 0.96134 1.23654 1.19826 1.74051 1.12288 1.08012 1.18737 1.24740 0.87063 0.92528 1.04781 1.45954 1.07081 1.08172 1.54705 1.21880 0.97785 0.76102 1.04891 1.21720 0.96261 0.93381 1.03183 0.87725 1.19985 0.77964 0.87255 0.84433 1.90755 1.52104 1.73410 1.24124 1.48363 1.62768 1.09477 1.12872 1.21819 0.97128 0.97294 0.85704 1.21907 0.95373 0.98208 1.01440 1.22118 1.02182 0.92883 1.00237 1.20665 0.93020 0.86336 0.93921 0.91729 1.43804 1.44847 0.98766 1.43894 1.20864 0.95479 0.92540 0.89604 1.19136 0.96871 1.02960 1.20468 0.91727 1.25382 0.96472 0.98731 0.97768 1.70019 1.25882 1.14598 1.43705 0.86257 0.80199 0.78742 0.81821 1.20184 1.21613 1.21365 1.22625 0.99936 0.76222 1.03780 1.21590 0.96810 0.95437 1.00863 1.20270 0.91168 0.91240 1.04513 0.89462 0.90275 0.88590 0.87991 0.88105 0.91124 0.90674 0.91788 0.91108 0.91633 0.92163 0.95055 0.94035 0.98462 0.93557 0.91886 0.88899 0.89723 0.88950 0.87668 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.28 36.00 0.37 -0.07 16 2 C 0.18 1.92 8.07 -155.45 -1.25 0.66 16 3 N -0.30 -4.19 12.23 32.70 0.40 -3.79 16 4 N -0.29 -4.10 12.21 32.76 0.40 -3.70 16 5 C 0.18 1.96 7.75 -155.30 -1.20 0.76 16 6 N -0.47 -4.68 3.11 -110.87 -0.35 -5.02 16 7 C 0.12 0.98 5.95 -4.01 -0.02 0.95 16 8 C -0.12 -1.10 1.73 -91.53 -0.16 -1.25 16 9 H 0.10 0.75 6.20 -51.93 -0.32 0.43 16 10 C 0.52 6.75 6.66 -10.98 -0.07 6.68 16 11 O -0.53 -9.22 15.85 5.56 0.09 -9.13 16 12 N -0.60 -7.88 2.97 -172.78 -0.51 -8.39 16 13 C 0.10 0.98 6.15 -3.72 -0.02 0.96 16 14 C -0.13 -1.35 6.08 -26.61 -0.16 -1.51 16 15 C -0.13 -1.97 5.13 -26.65 -0.14 -2.11 16 16 C 0.17 3.17 2.74 -67.77 -0.19 2.98 16 17 H 0.06 1.29 7.89 -51.93 -0.41 0.88 16 18 N -0.59 -13.89 2.80 -173.30 -0.49 -14.38 16 19 C 0.16 3.68 7.92 59.85 0.47 4.15 16 20 C -0.26 -7.00 9.47 -15.06 -0.14 -7.14 16 21 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 22 C 0.02 0.44 5.39 -17.43 -0.09 0.35 16 23 N -0.90 -25.37 10.64 55.49 0.59 -24.78 16 24 Si 0.90 21.29 29.56 -169.99 -5.02 16.27 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 C 0.10 1.70 5.80 -3.71 -0.02 1.68 16 29 C -0.11 -0.92 4.77 -26.41 -0.13 -1.05 16 30 C -0.03 -0.25 6.34 -27.59 -0.17 -0.43 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.41 8.04 -51.93 -0.42 -0.01 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.67 7.85 -51.93 -0.41 0.26 16 35 H 0.10 0.91 8.12 -51.92 -0.42 0.49 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.51 5.30 -51.93 -0.28 0.24 16 38 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.89 6.71 -51.93 -0.35 0.54 16 42 H 0.03 0.79 7.25 -51.93 -0.38 0.41 16 43 H 0.04 1.04 7.61 -51.93 -0.40 0.65 16 44 H 0.00 -0.06 6.45 -51.93 -0.34 -0.40 16 45 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.06 1.12 7.51 -51.93 -0.39 0.73 16 47 H 0.09 1.96 7.00 -51.93 -0.36 1.60 16 48 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 49 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 50 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 394.34 15.07 5.94 5.94 Total: -1.00 -33.87 394.34 -10.11 -43.98 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -8.23 Total: -2.62 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -2.93 Total: 5.62 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.05 Total: -60.07 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.87 -10.11 -43.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027690694.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.983 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds