Wall clock time and date at job start Wed Apr 1 2020 05:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30842 * 126.47033 * 2 1 4 4 N 1.28908 * 109.74314 * 179.97438 * 3 2 1 5 5 C 1.29841 * 109.47937 * 359.97201 * 4 3 2 6 6 N 1.34698 * 126.46468 * 180.02562 * 2 1 3 7 7 C 1.46253 * 128.85023 * 0.15539 * 6 2 1 8 8 C 1.53314 * 108.73070 * 162.84967 * 7 6 2 9 9 H 1.09006 * 109.45289 * 290.30041 * 8 7 6 10 10 C 1.50704 * 109.45243 * 170.34661 * 8 7 6 11 11 O 1.21273 * 120.00300 * 274.39106 * 10 8 7 12 12 N 1.34784 * 119.99785 * 94.38837 * 10 8 7 13 13 C 1.46922 * 120.63233 * 354.30928 * 12 10 8 14 14 C 1.53187 * 108.77545 * 233.58715 * 13 12 10 15 15 C 1.53042 * 109.34143 * 305.34612 * 14 13 12 16 16 C 1.53112 * 109.49878 * 61.34709 * 15 14 13 17 17 H 1.08997 * 109.51617 * 58.63343 * 16 15 14 18 18 N 1.46500 * 109.48507 * 178.70557 * 16 15 14 19 19 C 1.46500 * 120.00389 * 59.85286 * 18 16 15 20 20 C 1.36946 * 119.99794 * 239.85398 * 18 16 15 21 21 H 1.07996 * 119.99721 * 34.15866 * 20 18 16 22 22 C 1.38809 * 120.00087 * 214.15491 * 20 18 16 23 23 N 1.31620 * 119.99834 * 355.26247 * 22 20 18 24 24 Si 1.86796 * 120.00045 * 175.25781 * 22 20 18 25 25 H 1.48499 * 109.47029 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47008 * 120.00287 * 24 22 20 27 27 H 1.48500 * 109.47038 * 240.00278 * 24 22 20 28 28 C 1.46922 * 120.62803 * 174.28311 * 12 10 8 29 29 C 1.53144 * 109.56729 * 50.32595 * 8 7 6 30 30 C 1.50804 * 128.52372 * 180.08767 * 5 4 3 31 31 H 1.08996 * 109.47224 * 89.97279 * 1 2 3 32 32 H 1.08998 * 109.47479 * 209.97843 * 1 2 3 33 33 H 1.09000 * 109.46971 * 329.97318 * 1 2 3 34 34 H 1.08992 * 109.57528 * 43.08317 * 7 6 2 35 35 H 1.09008 * 109.60910 * 282.63007 * 7 6 2 36 36 H 1.08998 * 109.59088 * 113.79813 * 13 12 10 37 37 H 1.09001 * 109.58694 * 353.37018 * 13 12 10 38 38 H 1.09008 * 109.50297 * 65.31289 * 14 13 12 39 39 H 1.09008 * 109.50167 * 185.37998 * 14 13 12 40 40 H 1.08998 * 109.46396 * 181.40313 * 15 14 13 41 41 H 1.09003 * 109.46154 * 301.36552 * 15 14 13 42 42 H 1.09003 * 109.47182 * 94.92655 * 19 18 16 43 43 H 1.08999 * 109.47147 * 214.92787 * 19 18 16 44 44 H 1.09001 * 109.46956 * 334.92898 * 19 18 16 45 45 H 0.96998 * 120.00387 * 180.02562 * 23 22 20 46 46 H 1.08998 * 109.59090 * 246.19833 * 28 12 10 47 47 H 1.08997 * 109.58968 * 6.49002 * 28 12 10 48 48 H 1.08998 * 109.49686 * 50.50185 * 29 8 7 49 49 H 1.08997 * 109.50015 * 170.60274 * 29 8 7 50 50 H 1.08996 * 109.72702 * 44.47903 * 30 5 4 51 51 H 1.08995 * 109.73108 * 283.79440 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6812 0.0005 5 6 3.5815 -0.6157 0.0015 6 7 2.3075 -1.0833 -0.0005 7 6 1.9367 -2.4980 -0.0042 8 6 3.1549 -3.3251 -0.4314 9 1 3.3619 -3.1480 -1.4869 10 6 2.8687 -4.7888 -0.2149 11 8 3.0670 -5.2913 0.8709 12 7 2.3923 -5.5394 -1.2279 13 6 2.0296 -4.9219 -2.5108 14 6 0.5920 -5.3192 -2.8602 15 6 0.4686 -6.8445 -2.8405 16 6 0.7865 -7.3648 -1.4360 17 1 0.1005 -6.9162 -0.7176 18 7 0.6383 -8.8221 -1.4096 19 6 1.4556 -9.6577 -2.2927 20 6 -0.2645 -9.4031 -0.5594 21 1 -1.1943 -8.9020 -0.3345 22 6 0.0156 -10.6362 0.0131 23 7 1.1045 -11.2900 -0.3322 24 14 -1.1527 -11.3676 1.2738 25 1 -2.2945 -10.4421 1.4861 26 1 -1.6596 -12.6732 0.7800 27 1 -0.4332 -11.5693 2.5571 28 6 2.2264 -6.9907 -1.0705 29 6 4.3717 -2.9145 0.4029 30 6 4.8051 -1.4973 0.0042 31 1 -0.3633 0.0005 -1.0276 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3633 0.8897 0.5143 34 1 1.1201 -2.6597 -0.7078 35 1 1.6246 -2.7971 0.9965 36 1 2.7056 -5.2739 -3.2900 37 1 2.0987 -3.8373 -2.4268 38 1 -0.0924 -4.8894 -2.1286 39 1 0.3428 -4.9469 -3.8540 40 1 -0.5473 -7.1302 -3.1132 41 1 1.1707 -7.2749 -3.5545 42 1 2.3407 -9.9975 -1.7547 43 1 0.8741 -10.5206 -2.6172 44 1 1.7604 -9.0767 -3.1632 45 1 1.3001 -12.1519 0.0676 46 1 2.9184 -7.5115 -1.7322 47 1 2.4278 -7.2715 -0.0368 48 1 4.1098 -2.9311 1.4608 49 1 5.1903 -3.6104 0.2193 50 1 5.5303 -1.1179 0.7241 51 1 5.2484 -1.5146 -0.9914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027690694.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:25 Heat of formation + Delta-G solvation = 43.846427 kcal Electronic energy + Delta-G solvation = -31929.238876 eV Core-core repulsion = 27864.586170 eV Total energy + Delta-G solvation = -4064.652705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.37849 -41.55064 -39.20466 -37.76464 -36.77058 -35.13144 -34.04830 -32.83747 -32.61283 -31.64115 -30.31224 -28.34389 -28.02584 -26.89971 -25.67974 -25.21912 -23.97188 -23.06637 -22.40557 -21.37734 -20.56468 -19.67636 -18.84851 -18.50566 -17.90071 -17.50836 -17.00511 -16.80459 -16.33758 -15.90933 -15.70333 -15.40026 -15.29597 -15.19234 -14.90762 -14.80703 -14.72801 -14.39609 -14.00753 -13.86674 -13.84348 -13.56355 -13.44920 -13.29109 -13.05270 -12.95968 -12.79196 -12.60374 -12.55453 -12.32169 -12.22142 -12.15771 -12.08694 -11.99922 -11.73011 -11.63874 -11.36089 -11.33500 -11.15598 -10.86844 -10.63270 -10.01659 -9.71739 -8.62691 -7.88499 -5.44868 0.78943 1.20701 1.41781 1.44827 1.53548 1.57572 1.77871 1.90345 2.46630 3.08101 3.18676 3.26817 3.29198 3.44160 3.54277 3.63407 3.82160 3.92448 4.00719 4.03665 4.07603 4.11262 4.20839 4.27354 4.30775 4.40618 4.48009 4.62720 4.64316 4.67948 4.71294 4.80432 4.83379 4.85994 4.89883 4.96350 4.98073 4.99586 5.05166 5.07730 5.18341 5.24083 5.28306 5.43865 5.46999 5.58200 5.65231 5.74980 5.86373 6.36549 6.39892 7.07215 7.16309 7.67998 7.84415 8.31507 9.13505 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016709 B = 0.002583 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.316290 B =10836.206711 C =10902.973066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.185 3.815 3 N -0.345 5.345 4 N -0.333 5.333 5 C 0.176 3.824 6 N -0.467 5.467 7 C 0.118 3.882 8 C -0.109 4.109 9 H 0.136 0.864 10 C 0.520 3.480 11 O -0.580 6.580 12 N -0.599 5.599 13 C 0.099 3.901 14 C -0.122 4.122 15 C -0.125 4.125 16 C 0.168 3.832 17 H 0.047 0.953 18 N -0.610 5.610 19 C 0.177 3.823 20 C -0.270 4.270 21 H 0.064 0.936 22 C -0.039 4.039 23 N -0.930 5.930 24 Si 0.961 3.039 25 H -0.265 1.265 26 H -0.288 1.288 27 H -0.294 1.294 28 C 0.115 3.885 29 C -0.105 4.105 30 C -0.024 4.024 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.001 0.999 43 H 0.012 0.988 44 H 0.034 0.966 45 H 0.249 0.751 46 H 0.059 0.941 47 H 0.046 0.954 48 H 0.065 0.935 49 H 0.097 0.903 50 H 0.113 0.887 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 20.343 -7.044 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 N -0.185 5.185 4 N -0.171 5.171 5 C -0.093 4.093 6 N -0.158 5.158 7 C -0.005 4.005 8 C -0.131 4.131 9 H 0.153 0.847 10 C 0.307 3.693 11 O -0.459 6.459 12 N -0.331 5.331 13 C -0.022 4.022 14 C -0.161 4.161 15 C -0.164 4.164 16 C 0.061 3.939 17 H 0.065 0.935 18 N -0.333 5.333 19 C 0.033 3.967 20 C -0.400 4.400 21 H 0.082 0.918 22 C -0.236 4.236 23 N -0.574 5.574 24 Si 0.789 3.211 25 H -0.190 1.190 26 H -0.215 1.215 27 H -0.221 1.221 28 C -0.010 4.010 29 C -0.144 4.144 30 C -0.064 4.064 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.133 0.867 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.019 0.981 43 H 0.031 0.969 44 H 0.052 0.948 45 H 0.059 0.941 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.084 0.916 49 H 0.115 0.885 50 H 0.131 0.869 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.636 21.347 -6.449 22.455 hybrid contribution -0.778 -2.558 1.150 2.911 sum 1.858 18.789 -5.299 19.610 Atomic orbital electron populations 1.20453 0.80844 1.05683 1.05751 1.25385 0.98536 0.82125 1.02304 1.74400 0.96634 1.25462 1.22052 1.73957 1.12855 1.09696 1.20614 1.25256 0.88322 0.92201 1.03500 1.46023 1.06696 1.08534 1.54548 1.21966 0.98151 0.75033 1.05328 1.21647 0.96603 0.89791 1.05025 0.84657 1.20649 0.76565 0.88745 0.83328 1.90745 1.54063 1.74763 1.26349 1.48345 1.62636 1.07520 1.14647 1.22176 0.96827 0.99350 0.83857 1.21896 0.96089 0.94306 1.03803 1.21955 1.01418 0.96428 0.96623 1.20812 0.93242 0.83503 0.96379 0.93505 1.44022 1.44533 1.00925 1.43800 1.20547 0.93655 0.92191 0.90340 1.19423 0.97497 1.03011 1.20120 0.91844 1.26076 0.98197 0.99600 0.99709 1.70179 1.27625 1.14757 1.44888 0.85309 0.78638 0.78049 0.79142 1.18970 1.21507 1.22062 1.21985 0.98842 0.79485 1.00717 1.21543 0.96927 0.96113 0.99771 1.20376 0.90114 0.89697 1.06170 0.87403 0.88645 0.88312 0.85113 0.89072 0.89531 0.86743 0.91293 0.87506 0.92742 0.91975 0.98061 0.96923 0.94759 0.94147 0.92265 0.93569 0.91639 0.88459 0.86891 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.28 71.23 0.73 0.05 16 2 C 0.18 3.54 8.07 138.14 1.11 4.66 16 3 N -0.35 -9.30 12.23 -50.46 -0.62 -9.92 16 4 N -0.33 -9.04 12.21 -50.27 -0.61 -9.66 16 5 C 0.18 3.54 7.75 138.14 1.07 4.61 16 6 N -0.47 -8.07 3.11 -504.67 -1.57 -9.64 16 7 C 0.12 1.57 5.95 86.53 0.52 2.09 16 8 C -0.11 -1.58 1.73 -11.39 -0.02 -1.60 16 9 H 0.14 1.17 6.20 -2.38 -0.01 1.16 16 10 C 0.52 12.66 6.66 87.66 0.58 13.24 16 11 O -0.58 -20.54 15.85 -3.01 -0.05 -20.58 16 12 N -0.60 -14.34 2.97 -818.93 -2.43 -16.77 16 13 C 0.10 1.37 6.15 86.36 0.53 1.90 16 14 C -0.12 -1.93 6.08 30.67 0.19 -1.74 16 15 C -0.12 -3.35 5.13 30.65 0.16 -3.19 16 16 C 0.17 6.23 2.74 45.09 0.12 6.36 16 17 H 0.05 1.87 7.89 -2.39 -0.02 1.85 16 18 N -0.61 -29.22 2.80 -702.20 -1.97 -31.18 16 19 C 0.18 8.37 7.92 127.77 1.01 9.38 16 20 C -0.27 -14.60 9.47 84.03 0.80 -13.80 16 21 H 0.06 3.37 7.83 -2.91 -0.02 3.35 16 22 C -0.04 -2.19 5.39 84.86 0.46 -1.74 16 23 N -0.93 -54.45 10.64 21.65 0.23 -54.22 16 24 Si 0.96 44.77 29.56 68.60 2.03 46.80 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 28 C 0.11 4.02 5.80 86.36 0.50 4.52 16 29 C -0.10 -1.57 4.77 30.80 0.15 -1.42 16 30 C -0.02 -0.31 6.34 30.04 0.19 -0.12 16 31 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 0.64 8.04 -2.39 -0.02 0.62 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.13 1.02 7.85 -2.39 -0.02 1.00 16 35 H 0.09 1.46 8.12 -2.38 -0.02 1.44 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 0.77 5.30 -2.39 -0.01 0.76 16 38 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.65 6.71 -2.39 -0.02 1.63 16 42 H 0.00 0.06 7.25 -2.39 -0.02 0.04 16 43 H 0.01 0.63 7.61 -2.39 -0.02 0.61 16 44 H 0.03 1.33 6.45 -2.39 -0.02 1.31 16 45 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 46 H 0.06 2.10 7.51 -2.39 -0.02 2.08 16 47 H 0.05 2.05 7.00 -2.39 -0.02 2.03 16 48 H 0.06 1.25 8.11 -2.39 -0.02 1.23 16 49 H 0.10 1.39 8.11 -2.39 -0.02 1.37 16 50 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -80.30 394.34 4.03 -76.27 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 0.93 Total: 5.71 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 8.10 Total: 23.20 kcal Atomic # 7 Polarization: -124.43 SS G_CDS: -6.97 Total: -131.40 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.05 Total: -20.58 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -80.30 4.03 -76.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027690694.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.118 kcal (2) G-P(sol) polarization free energy of solvation -80.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds