Wall clock time and date at job start Wed Apr 1 2020 05:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33471 * 125.49778 * 2 1 4 4 C 1.30335 * 109.72878 * 179.97438 * 3 2 1 5 5 N 1.34678 * 108.04262 * 0.06506 * 4 3 2 6 6 N 1.30976 * 125.49841 * 180.02562 * 2 1 3 7 7 C 1.46297 * 125.04879 * 179.88924 * 5 4 3 8 8 C 1.53309 * 108.76997 * 342.98330 * 7 5 4 9 9 H 1.08994 * 109.46832 * 290.13743 * 8 7 5 10 10 C 1.50703 * 109.46573 * 170.13906 * 8 7 5 11 11 O 1.21282 * 119.99537 * 239.99806 * 10 8 7 12 12 N 1.34772 * 120.00075 * 60.00384 * 10 8 7 13 13 C 1.46497 * 120.00047 * 179.97438 * 12 10 8 14 14 H 1.08998 * 109.18421 * 34.56661 * 13 12 10 15 15 C 1.47092 * 109.32999 * 154.13011 * 13 12 10 16 16 C 1.52564 * 114.32905 * 183.06553 * 15 13 12 17 17 C 1.50824 * 109.35688 * 274.98682 * 16 15 13 18 18 C 1.53947 * 110.09636 * 91.89523 * 17 16 15 19 19 N 1.47600 * 112.14500 * 319.41034 * 18 17 16 20 20 C 1.36945 * 118.64305 * 137.87061 * 19 18 17 21 21 H 1.08001 * 119.99651 * 206.50949 * 20 19 18 22 22 C 1.38812 * 120.00105 * 26.50923 * 20 19 18 23 23 N 1.31626 * 119.99668 * 15.67373 * 22 20 19 24 24 Si 1.86797 * 119.99909 * 195.67544 * 22 20 19 25 25 H 1.48497 * 109.47291 * 90.00159 * 24 22 20 26 26 H 1.48507 * 109.46920 * 210.00201 * 24 22 20 27 27 H 1.48497 * 109.47020 * 329.99733 * 24 22 20 28 28 C 1.44577 * 122.71239 * 317.89255 * 19 18 17 29 29 C 1.53163 * 109.48547 * 50.13637 * 8 7 5 30 30 C 1.50921 * 127.90454 * 180.10899 * 4 3 2 31 31 H 1.09005 * 109.46778 * 269.99333 * 1 2 3 32 32 H 1.09003 * 109.47379 * 29.99345 * 1 2 3 33 33 H 1.08998 * 109.47304 * 149.99674 * 1 2 3 34 34 H 1.08996 * 109.59209 * 223.19968 * 7 5 4 35 35 H 1.08997 * 109.70524 * 102.83418 * 7 5 4 36 36 H 0.97004 * 119.99698 * 359.97438 * 12 10 8 37 37 H 1.09004 * 108.51255 * 304.32076 * 15 13 12 38 38 H 1.08996 * 108.51573 * 61.80977 * 15 13 12 39 39 H 1.09004 * 109.48665 * 34.95852 * 16 15 13 40 40 H 1.08995 * 109.49411 * 154.99650 * 16 15 13 41 41 H 1.08999 * 109.38569 * 331.69113 * 17 16 15 42 42 H 1.08999 * 109.34529 * 212.07485 * 17 16 15 43 43 H 1.09007 * 108.94648 * 198.72080 * 18 17 16 44 44 H 1.09004 * 108.94679 * 80.09982 * 18 17 16 45 45 H 0.96996 * 119.99260 * 179.97438 * 23 22 20 46 46 H 1.09005 * 109.44865 * 210.74171 * 28 19 18 47 47 H 1.08994 * 109.45152 * 330.66482 * 28 19 18 48 48 H 1.09007 * 109.50783 * 50.74997 * 29 8 7 49 49 H 1.09004 * 109.50598 * 170.88283 * 29 8 7 50 50 H 1.08998 * 109.72257 * 283.69970 * 30 4 3 51 51 H 1.09002 * 109.71772 * 44.30664 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0866 0.0000 4 6 3.5363 0.7324 0.0005 5 7 3.5897 -0.6133 -0.0005 6 7 2.2675 -1.0663 -0.0005 7 6 4.8198 -1.4052 -0.0027 8 6 5.9854 -0.5049 -0.4283 9 1 5.8848 -0.2554 -1.4845 10 6 7.2875 -1.2301 -0.2051 11 8 8.1195 -0.7653 0.5450 12 7 7.5274 -2.3949 -0.8392 13 6 8.7934 -3.0995 -0.6227 14 1 9.1129 -2.9531 0.4091 15 6 8.6002 -4.5360 -0.8733 16 6 9.8351 -5.3919 -0.6086 17 6 10.7152 -5.3920 -1.8334 18 6 11.7529 -4.2587 -1.7393 19 7 11.1726 -3.0171 -1.1912 20 6 11.8989 -2.3004 -0.2779 21 1 11.3934 -1.6733 0.4416 22 6 13.2848 -2.3801 -0.2768 23 7 13.9160 -2.8808 -1.3176 24 14 14.2538 -1.7766 1.2018 25 1 14.4368 -2.8936 2.1631 26 1 15.5821 -1.2846 0.7558 27 1 13.5128 -0.6719 1.8618 28 6 9.8689 -2.5267 -1.5785 29 6 5.9680 0.7809 0.4038 30 6 4.7522 1.6265 0.0030 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3634 -0.8899 -0.5139 34 1 4.7210 -2.2319 -0.7061 35 1 5.0067 -1.7966 0.9973 36 1 6.8618 -2.7666 -1.4389 37 1 7.7895 -4.8922 -0.2378 38 1 8.3036 -4.6689 -1.9137 39 1 10.3877 -4.9813 0.2365 40 1 9.5281 -6.4126 -0.3808 41 1 10.0999 -5.2458 -2.7211 42 1 11.2312 -6.3493 -1.9072 43 1 12.1467 -4.0558 -2.7352 44 1 12.5715 -4.5810 -1.0957 45 1 14.8843 -2.9360 -1.3170 46 1 9.8598 -1.4380 -1.5242 47 1 9.6515 -2.8406 -2.5993 48 1 5.9030 0.5286 1.4623 49 1 6.8815 1.3462 0.2192 50 1 4.9055 2.0417 -0.9930 51 1 4.6129 2.4348 0.7209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034319924.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:13 Heat of formation + Delta-G solvation = 64.274590 kcal Electronic energy + Delta-G solvation = -31355.767471 eV Core-core repulsion = 27292.000597 eV Total energy + Delta-G solvation = -4063.766874 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.61295 -40.15698 -38.08127 -36.68157 -34.72224 -33.55006 -33.26465 -32.31978 -31.01066 -30.49876 -29.55751 -28.54422 -26.04511 -24.76525 -24.39753 -23.63952 -22.79169 -21.08255 -20.53131 -20.26548 -19.48780 -19.22058 -17.38488 -16.95103 -16.62533 -16.35008 -16.02422 -15.59713 -15.02756 -14.73844 -14.60077 -14.47746 -14.23676 -14.04598 -13.63526 -13.50746 -13.22659 -13.15418 -12.86424 -12.80024 -12.58129 -12.54134 -12.18853 -12.15168 -11.92386 -11.60608 -11.53366 -11.22532 -11.08567 -10.96834 -10.80374 -10.60845 -10.27296 -10.19450 -10.14971 -9.95193 -9.78125 -9.72858 -9.65935 -9.62582 -9.53131 -8.94058 -8.35410 -6.67269 -5.77002 -3.20974 1.34866 1.90705 2.61541 2.65541 3.14889 3.40222 3.47130 3.50510 3.63398 3.89119 4.18793 4.26704 4.42224 4.53673 4.56981 4.78291 4.85769 4.94908 5.02223 5.16741 5.19311 5.25057 5.30089 5.36004 5.40343 5.46698 5.49056 5.56699 5.63762 5.68608 5.82584 5.93275 5.97219 6.07801 6.09559 6.20685 6.23772 6.33255 6.50304 6.54796 6.56146 6.60416 6.67273 6.77836 6.87346 7.03211 7.42021 7.60565 7.70048 7.88573 7.89487 8.30687 8.49211 9.25741 9.90674 10.34168 11.30608 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.002450 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.205809 B =11425.937651 C =12562.711945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.215 3.785 3 N -0.540 5.540 4 C 0.282 3.718 5 N -0.375 5.375 6 N -0.316 5.316 7 C 0.140 3.860 8 C -0.125 4.125 9 H 0.110 0.890 10 C 0.518 3.482 11 O -0.515 6.515 12 N -0.721 5.721 13 C 0.113 3.887 14 H 0.089 0.911 15 C -0.112 4.112 16 C -0.100 4.100 17 C -0.144 4.144 18 C 0.176 3.824 19 N -0.584 5.584 20 C -0.256 4.256 21 H 0.070 0.930 22 C 0.004 3.996 23 N -0.906 5.906 24 Si 0.900 3.100 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.278 1.278 28 C 0.159 3.841 29 C -0.109 4.109 30 C -0.042 4.042 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.391 0.609 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.025 0.975 44 H 0.075 0.925 45 H 0.253 0.747 46 H 0.048 0.952 47 H 0.031 0.969 48 H 0.080 0.920 49 H 0.103 0.897 50 H 0.103 0.897 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.863 1.970 -0.539 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.067 4.067 3 N -0.268 5.268 4 C 0.006 3.994 5 N -0.166 5.166 6 N -0.145 5.145 7 C 0.017 3.983 8 C -0.148 4.148 9 H 0.128 0.872 10 C 0.301 3.699 11 O -0.389 6.389 12 N -0.371 5.371 13 C 0.006 3.994 14 H 0.108 0.892 15 C -0.150 4.150 16 C -0.139 4.139 17 C -0.183 4.183 18 C 0.051 3.949 19 N -0.304 5.304 20 C -0.386 4.386 21 H 0.087 0.913 22 C -0.194 4.194 23 N -0.550 5.550 24 Si 0.730 3.270 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.203 1.203 28 C 0.029 3.971 29 C -0.147 4.147 30 C -0.082 4.082 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.224 0.776 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.049 0.951 48 H 0.099 0.901 49 H 0.122 0.878 50 H 0.121 0.879 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.366 1.794 -0.038 21.441 hybrid contribution 0.442 -0.088 0.347 0.569 sum -20.924 1.706 0.309 20.996 Atomic orbital electron populations 1.20072 0.83890 1.03954 1.03658 1.24430 0.98249 0.85568 0.98407 1.70196 0.99869 1.30801 1.25965 1.24393 0.95053 0.83980 0.95998 1.50129 1.05542 1.05907 1.54996 1.77938 0.86505 1.22536 1.27509 1.21740 0.78456 0.93610 1.04450 1.21786 0.92597 0.96815 1.03569 0.87170 1.19859 0.87553 0.81487 0.80974 1.90809 1.46726 1.65263 1.36076 1.46251 1.20468 1.23177 1.47227 1.21344 0.82977 0.91245 1.03784 0.89248 1.20574 0.98696 0.94887 1.00851 1.20815 0.95502 0.97315 1.00244 1.22070 0.99223 1.00317 0.96649 1.21057 0.92593 0.82948 0.98269 1.43589 1.14229 1.22877 1.49730 1.19310 0.88186 1.23204 1.07902 0.91251 1.25027 0.96931 1.00325 0.97108 1.70080 1.07535 1.49958 1.27448 0.86309 0.79376 0.78611 0.82674 1.21495 1.21843 1.20294 1.20896 0.85582 0.97085 0.93582 1.21596 0.98666 0.94050 1.00418 1.20482 0.86614 0.96042 1.05044 0.89938 0.89595 0.90072 0.88140 0.88726 0.77558 0.93442 0.92829 0.90438 0.93373 0.93712 0.92894 0.95731 0.90617 0.93746 0.93321 0.95083 0.90119 0.87831 0.87922 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.00 0.38 -0.04 16 2 C 0.22 2.54 8.15 -156.43 -1.27 1.26 16 3 N -0.54 -6.75 11.18 -8.03 -0.09 -6.84 16 4 C 0.28 3.12 7.72 -155.78 -1.20 1.92 16 5 N -0.38 -4.23 4.04 -58.29 -0.24 -4.47 16 6 N -0.32 -4.02 12.74 32.50 0.41 -3.61 16 7 C 0.14 1.25 6.43 -3.99 -0.03 1.23 16 8 C -0.12 -1.13 2.54 -91.53 -0.23 -1.37 16 9 H 0.11 0.83 8.12 -51.93 -0.42 0.41 16 10 C 0.52 6.74 7.10 -10.99 -0.08 6.66 16 11 O -0.51 -9.22 15.48 5.56 0.09 -9.13 16 12 N -0.72 -8.84 4.96 -55.63 -0.28 -9.12 16 13 C 0.11 1.84 2.35 -69.79 -0.16 1.67 16 14 H 0.09 1.78 7.55 -51.93 -0.39 1.39 16 15 C -0.11 -1.60 4.55 -29.79 -0.14 -1.73 16 16 C -0.10 -1.63 5.50 -28.05 -0.15 -1.78 16 17 C -0.14 -2.53 5.71 -27.33 -0.16 -2.68 16 18 C 0.18 4.03 4.67 -2.95 -0.01 4.02 16 19 N -0.58 -13.95 2.27 -172.09 -0.39 -14.34 16 20 C -0.26 -6.94 9.44 -15.06 -0.14 -7.09 16 21 H 0.07 1.94 7.88 -52.49 -0.41 1.53 16 22 C 0.00 0.12 4.87 -17.43 -0.08 0.04 16 23 N -0.91 -25.92 11.01 55.49 0.61 -25.31 16 24 Si 0.90 21.96 29.58 -169.99 -5.03 16.93 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 28 C 0.16 3.18 5.24 -4.09 -0.02 3.15 16 29 C -0.11 -0.97 4.68 -26.43 -0.12 -1.09 16 30 C -0.04 -0.33 6.33 -27.55 -0.17 -0.51 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.74 7.88 -51.93 -0.41 0.33 16 35 H 0.09 0.87 8.11 -51.93 -0.42 0.45 16 36 H 0.39 3.48 8.23 -40.82 -0.34 3.15 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.70 7.36 -51.93 -0.38 0.32 16 39 H 0.08 1.49 7.48 -51.93 -0.39 1.10 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.04 0.73 7.32 -51.93 -0.38 0.35 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.02 0.61 8.03 -51.93 -0.42 0.20 16 44 H 0.08 1.95 6.33 -51.93 -0.33 1.62 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.05 1.07 7.98 -51.93 -0.41 0.66 16 47 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 48 H 0.08 0.79 8.12 -51.92 -0.42 0.36 16 49 H 0.10 0.98 7.80 -51.93 -0.41 0.57 16 50 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -33.95 398.08 -10.98 -44.93 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.47 Total: 1.30 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -3.60 Total: 3.66 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 0.03 Total: -63.69 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.95 -10.98 -44.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034319924.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.206 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds