Wall clock time and date at job start Wed Apr 1 2020 05:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33471 * 125.49778 * 2 1 4 4 C 1.30335 * 109.72878 * 179.97438 * 3 2 1 5 5 N 1.34678 * 108.04262 * 0.06506 * 4 3 2 6 6 N 1.30976 * 125.49841 * 180.02562 * 2 1 3 7 7 C 1.46297 * 125.04879 * 179.88924 * 5 4 3 8 8 C 1.53309 * 108.76997 * 342.98330 * 7 5 4 9 9 H 1.08994 * 109.46832 * 290.13743 * 8 7 5 10 10 C 1.50703 * 109.46573 * 170.13906 * 8 7 5 11 11 O 1.21282 * 119.99537 * 239.99806 * 10 8 7 12 12 N 1.34772 * 120.00075 * 60.00384 * 10 8 7 13 13 C 1.46497 * 120.00047 * 179.97438 * 12 10 8 14 14 H 1.08998 * 109.18421 * 34.56661 * 13 12 10 15 15 C 1.47092 * 109.32999 * 154.13011 * 13 12 10 16 16 C 1.52564 * 114.32905 * 183.06553 * 15 13 12 17 17 C 1.50824 * 109.35688 * 274.98682 * 16 15 13 18 18 C 1.53947 * 110.09636 * 91.89523 * 17 16 15 19 19 N 1.47600 * 112.14500 * 319.41034 * 18 17 16 20 20 C 1.36945 * 118.64305 * 137.87061 * 19 18 17 21 21 H 1.08001 * 119.99651 * 206.50949 * 20 19 18 22 22 C 1.38812 * 120.00105 * 26.50923 * 20 19 18 23 23 N 1.31626 * 119.99668 * 15.67373 * 22 20 19 24 24 Si 1.86797 * 119.99909 * 195.67544 * 22 20 19 25 25 H 1.48497 * 109.47291 * 90.00159 * 24 22 20 26 26 H 1.48507 * 109.46920 * 210.00201 * 24 22 20 27 27 H 1.48497 * 109.47020 * 329.99733 * 24 22 20 28 28 C 1.44577 * 122.71239 * 317.89255 * 19 18 17 29 29 C 1.53163 * 109.48547 * 50.13637 * 8 7 5 30 30 C 1.50921 * 127.90454 * 180.10899 * 4 3 2 31 31 H 1.09005 * 109.46778 * 269.99333 * 1 2 3 32 32 H 1.09003 * 109.47379 * 29.99345 * 1 2 3 33 33 H 1.08998 * 109.47304 * 149.99674 * 1 2 3 34 34 H 1.08996 * 109.59209 * 223.19968 * 7 5 4 35 35 H 1.08997 * 109.70524 * 102.83418 * 7 5 4 36 36 H 0.97004 * 119.99698 * 359.97438 * 12 10 8 37 37 H 1.09004 * 108.51255 * 304.32076 * 15 13 12 38 38 H 1.08996 * 108.51573 * 61.80977 * 15 13 12 39 39 H 1.09004 * 109.48665 * 34.95852 * 16 15 13 40 40 H 1.08995 * 109.49411 * 154.99650 * 16 15 13 41 41 H 1.08999 * 109.38569 * 331.69113 * 17 16 15 42 42 H 1.08999 * 109.34529 * 212.07485 * 17 16 15 43 43 H 1.09007 * 108.94648 * 198.72080 * 18 17 16 44 44 H 1.09004 * 108.94679 * 80.09982 * 18 17 16 45 45 H 0.96996 * 119.99260 * 179.97438 * 23 22 20 46 46 H 1.09005 * 109.44865 * 210.74171 * 28 19 18 47 47 H 1.08994 * 109.45152 * 330.66482 * 28 19 18 48 48 H 1.09007 * 109.50783 * 50.74997 * 29 8 7 49 49 H 1.09004 * 109.50598 * 170.88283 * 29 8 7 50 50 H 1.08998 * 109.72257 * 283.69970 * 30 4 3 51 51 H 1.09002 * 109.71772 * 44.30664 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0866 0.0000 4 6 3.5363 0.7324 0.0005 5 7 3.5897 -0.6133 -0.0005 6 7 2.2675 -1.0663 -0.0005 7 6 4.8198 -1.4052 -0.0027 8 6 5.9854 -0.5049 -0.4283 9 1 5.8848 -0.2554 -1.4845 10 6 7.2875 -1.2301 -0.2051 11 8 8.1195 -0.7653 0.5450 12 7 7.5274 -2.3949 -0.8392 13 6 8.7934 -3.0995 -0.6227 14 1 9.1129 -2.9531 0.4091 15 6 8.6002 -4.5360 -0.8733 16 6 9.8351 -5.3919 -0.6086 17 6 10.7152 -5.3920 -1.8334 18 6 11.7529 -4.2587 -1.7393 19 7 11.1726 -3.0171 -1.1912 20 6 11.8989 -2.3004 -0.2779 21 1 11.3934 -1.6733 0.4416 22 6 13.2848 -2.3801 -0.2768 23 7 13.9160 -2.8808 -1.3176 24 14 14.2538 -1.7766 1.2018 25 1 14.4368 -2.8936 2.1631 26 1 15.5821 -1.2846 0.7558 27 1 13.5128 -0.6719 1.8618 28 6 9.8689 -2.5267 -1.5785 29 6 5.9680 0.7809 0.4038 30 6 4.7522 1.6265 0.0030 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3634 -0.8899 -0.5139 34 1 4.7210 -2.2319 -0.7061 35 1 5.0067 -1.7966 0.9973 36 1 6.8618 -2.7666 -1.4389 37 1 7.7895 -4.8922 -0.2378 38 1 8.3036 -4.6689 -1.9137 39 1 10.3877 -4.9813 0.2365 40 1 9.5281 -6.4126 -0.3808 41 1 10.0999 -5.2458 -2.7211 42 1 11.2312 -6.3493 -1.9072 43 1 12.1467 -4.0558 -2.7352 44 1 12.5715 -4.5810 -1.0957 45 1 14.8843 -2.9360 -1.3170 46 1 9.8598 -1.4380 -1.5242 47 1 9.6515 -2.8406 -2.5993 48 1 5.9030 0.5286 1.4623 49 1 6.8815 1.3462 0.2192 50 1 4.9055 2.0417 -0.9930 51 1 4.6129 2.4348 0.7209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034319924.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:12 Heat of formation + Delta-G solvation = 42.804131 kcal Electronic energy + Delta-G solvation = -31356.698500 eV Core-core repulsion = 27292.000597 eV Total energy + Delta-G solvation = -4064.697902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.42519 -41.29626 -39.46283 -37.64290 -36.25013 -34.87742 -34.25789 -33.16197 -32.83108 -31.75341 -30.49585 -29.30342 -27.86587 -26.01274 -25.39421 -25.04088 -24.03358 -21.97321 -21.64751 -21.46951 -20.85524 -20.34238 -18.59378 -18.33157 -17.88628 -17.32342 -17.17658 -16.70560 -16.39886 -16.24782 -15.66066 -15.44269 -15.32275 -15.25861 -14.87330 -14.74822 -14.40721 -14.19774 -14.08205 -13.85872 -13.80356 -13.52494 -13.33263 -13.10311 -13.00325 -12.84422 -12.82728 -12.68430 -12.45689 -12.36388 -12.22907 -12.03576 -11.97378 -11.63929 -11.46387 -11.37755 -11.14840 -11.13181 -10.89187 -10.78569 -10.51430 -10.31964 -10.13937 -8.63610 -7.87396 -5.32949 0.53131 1.11023 1.42189 1.43519 1.52851 1.61775 1.80225 2.09633 2.50925 2.91937 3.12067 3.25450 3.42431 3.47291 3.71124 3.74912 3.81054 3.92747 4.03974 4.12652 4.18240 4.20354 4.28977 4.36741 4.44763 4.51463 4.53343 4.73807 4.74035 4.76257 4.77214 4.89495 4.92682 4.94546 5.00409 5.05726 5.09745 5.14497 5.23426 5.28022 5.30301 5.36284 5.42530 5.47083 5.63954 5.66504 5.71435 5.74379 5.83672 6.40828 6.57475 7.06040 7.18640 7.28666 7.95231 8.29983 9.16871 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.002450 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.205809 B =11425.937651 C =12562.711945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.205 3.795 3 N -0.564 5.564 4 C 0.277 3.723 5 N -0.380 5.380 6 N -0.343 5.343 7 C 0.141 3.859 8 C -0.108 4.108 9 H 0.136 0.864 10 C 0.521 3.479 11 O -0.568 6.568 12 N -0.706 5.706 13 C 0.134 3.866 14 H 0.048 0.952 15 C -0.110 4.110 16 C -0.099 4.099 17 C -0.131 4.131 18 C 0.185 3.815 19 N -0.597 5.597 20 C -0.257 4.257 21 H 0.052 0.948 22 C -0.045 4.045 23 N -0.932 5.932 24 Si 0.956 3.044 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.158 3.842 29 C -0.106 4.106 30 C -0.033 4.033 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.414 0.586 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.039 0.961 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.068 0.932 43 H -0.006 1.006 44 H 0.038 0.962 45 H 0.249 0.751 46 H 0.019 0.981 47 H 0.049 0.951 48 H 0.067 0.933 49 H 0.097 0.903 50 H 0.124 0.876 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.605 1.177 -1.252 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 N -0.293 5.293 4 C 0.001 3.999 5 N -0.171 5.171 6 N -0.172 5.172 7 C 0.019 3.981 8 C -0.130 4.130 9 H 0.153 0.847 10 C 0.306 3.694 11 O -0.446 6.446 12 N -0.358 5.358 13 C 0.027 3.973 14 H 0.067 0.933 15 C -0.147 4.147 16 C -0.137 4.137 17 C -0.169 4.169 18 C 0.060 3.940 19 N -0.319 5.319 20 C -0.388 4.388 21 H 0.070 0.930 22 C -0.241 4.241 23 N -0.578 5.578 24 Si 0.785 3.215 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.203 1.203 28 C 0.029 3.971 29 C -0.144 4.144 30 C -0.072 4.072 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.141 0.859 35 H 0.108 0.892 36 H 0.252 0.748 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.012 0.988 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.038 0.962 47 H 0.067 0.933 48 H 0.086 0.914 49 H 0.116 0.884 50 H 0.142 0.858 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.176 0.979 -0.776 24.208 hybrid contribution 1.259 0.213 0.562 1.395 sum -22.917 1.192 -0.214 22.949 Atomic orbital electron populations 1.20236 0.81489 1.05006 1.04698 1.25184 0.99817 0.85168 0.97456 1.70217 1.00615 1.31485 1.27028 1.24918 0.95556 0.84334 0.95115 1.50210 1.05621 1.06173 1.55067 1.77881 0.87155 1.23383 1.28756 1.21809 0.77554 0.93784 1.04929 1.21650 0.90166 0.96194 1.05034 0.84669 1.20480 0.88237 0.81088 0.79629 1.90802 1.48876 1.66546 1.38347 1.45995 1.19494 1.22831 1.47482 1.20714 0.83480 0.93046 1.00084 0.93328 1.20519 0.98604 0.92458 1.03164 1.20794 0.95632 0.99378 0.97888 1.21926 0.98277 0.98358 0.98386 1.20848 0.93537 0.84284 0.95330 1.43729 1.15415 1.23374 1.49412 1.19356 0.88635 1.22785 1.08017 0.93043 1.25644 0.97733 1.01343 0.99334 1.70213 1.07305 1.51423 1.28845 0.85430 0.77936 0.78101 0.80012 1.21019 1.21771 1.20298 1.21013 0.85086 0.95554 0.95421 1.21536 0.98973 0.94178 0.99754 1.20562 0.84616 0.95482 1.06574 0.88800 0.88597 0.88928 0.85943 0.89164 0.74836 0.90561 0.90131 0.94255 0.90101 0.91524 0.91354 0.98785 0.94354 0.94173 0.96246 0.93302 0.91373 0.88450 0.85831 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 10.51 71.24 0.75 0.03 16 2 C 0.21 4.53 8.15 138.48 1.13 5.66 16 3 N -0.56 -13.27 11.18 -179.31 -2.01 -15.28 16 4 C 0.28 5.64 7.72 138.36 1.07 6.70 16 5 N -0.38 -7.84 4.04 -338.35 -1.37 -9.21 16 6 N -0.34 -8.17 12.74 -51.08 -0.65 -8.82 16 7 C 0.14 2.20 6.43 86.52 0.56 2.75 16 8 C -0.11 -1.74 2.54 -11.38 -0.03 -1.77 16 9 H 0.14 1.58 8.12 -2.39 -0.02 1.56 16 10 C 0.52 13.01 7.10 87.66 0.62 13.63 16 11 O -0.57 -20.83 15.48 -3.04 -0.05 -20.88 16 12 N -0.71 -15.82 4.96 -448.30 -2.22 -18.04 16 13 C 0.13 4.24 2.35 43.79 0.10 4.34 16 14 H 0.05 1.98 7.55 -2.39 -0.02 1.96 16 15 C -0.11 -2.76 4.55 28.61 0.13 -2.63 16 16 C -0.10 -2.97 5.50 29.74 0.16 -2.81 16 17 C -0.13 -4.36 5.71 30.21 0.17 -4.19 16 18 C 0.18 8.66 4.67 86.49 0.40 9.06 16 19 N -0.60 -29.43 2.27 -698.37 -1.59 -31.02 16 20 C -0.26 -14.55 9.44 84.03 0.79 -13.75 16 21 H 0.05 3.04 7.88 -2.91 -0.02 3.02 16 22 C -0.05 -2.58 4.87 84.86 0.41 -2.17 16 23 N -0.93 -55.38 11.01 21.65 0.24 -55.14 16 24 Si 0.96 46.68 29.58 68.60 2.03 48.71 16 25 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 28 C 0.16 6.34 5.24 87.37 0.46 6.80 16 29 C -0.11 -1.77 4.68 30.79 0.14 -1.63 16 30 C -0.03 -0.45 6.33 30.06 0.19 -0.26 16 31 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.12 1.37 7.88 -2.39 -0.02 1.35 16 35 H 0.09 1.51 8.11 -2.39 -0.02 1.49 16 36 H 0.41 5.72 8.23 -92.71 -0.76 4.96 16 37 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.08 1.67 7.36 -2.39 -0.02 1.65 16 39 H 0.04 1.50 7.48 -2.38 -0.02 1.48 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.07 1.95 7.32 -2.39 -0.02 1.94 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 43 H -0.01 -0.31 8.03 -2.38 -0.02 -0.33 16 44 H 0.04 2.05 6.33 -2.39 -0.02 2.04 16 45 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 46 H 0.02 0.87 7.98 -2.38 -0.02 0.85 16 47 H 0.05 1.77 8.07 -2.39 -0.02 1.76 16 48 H 0.07 1.31 8.12 -2.38 -0.02 1.29 16 49 H 0.10 1.79 7.80 -2.38 -0.02 1.77 16 50 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -78.97 398.08 1.62 -77.34 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.17 Total: 12.56 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 7.07 Total: 19.77 kcal Atomic # 7 Polarization: -129.90 SS G_CDS: -7.59 Total: -137.50 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -78.97 1.62 -77.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034319924.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.147 kcal (2) G-P(sol) polarization free energy of solvation -78.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds