Wall clock time and date at job start Wed Apr 1 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30843 * 126.46482 * 2 1 4 4 N 1.28906 * 109.74011 * 180.02562 * 3 2 1 5 5 C 1.29842 * 109.48060 * 0.03079 * 4 3 2 6 6 N 1.34696 * 126.46442 * 179.97438 * 2 1 3 7 7 C 1.46252 * 128.84839 * 359.83254 * 6 2 1 8 8 C 1.53313 * 108.73072 * 197.13943 * 7 6 2 9 9 H 1.09008 * 109.43059 * 69.73152 * 8 7 6 10 10 C 1.50704 * 109.45130 * 189.67298 * 8 7 6 11 11 O 1.21272 * 120.00394 * 0.11677 * 10 8 7 12 12 N 1.34777 * 119.99571 * 180.11467 * 10 8 7 13 13 C 1.46505 * 119.99969 * 180.02562 * 12 10 8 14 14 H 1.08999 * 109.32460 * 34.65159 * 13 12 10 15 15 C 1.47088 * 109.32927 * 154.12936 * 13 12 10 16 16 C 1.52566 * 114.32579 * 183.06182 * 15 13 12 17 17 C 1.50878 * 109.36446 * 274.99443 * 16 15 13 18 18 C 1.53946 * 110.09678 * 91.88115 * 17 16 15 19 19 N 1.47605 * 112.14152 * 319.43501 * 18 17 16 20 20 C 1.36937 * 118.64278 * 137.84590 * 19 18 17 21 21 H 1.08001 * 120.00289 * 206.52187 * 20 19 18 22 22 C 1.38818 * 120.00077 * 26.51728 * 20 19 18 23 23 N 1.31627 * 119.99508 * 15.67769 * 22 20 19 24 24 Si 1.86799 * 120.00198 * 195.67559 * 22 20 19 25 25 H 1.48502 * 109.47089 * 60.00378 * 24 22 20 26 26 H 1.48507 * 109.47076 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47140 * 299.99938 * 24 22 20 28 28 C 1.44576 * 122.71670 * 317.86782 * 19 18 17 29 29 C 1.53135 * 109.58520 * 309.71233 * 8 7 6 30 30 C 1.50794 * 128.52545 * 179.90521 * 5 4 3 31 31 H 1.09003 * 109.47156 * 89.97362 * 1 2 3 32 32 H 1.09000 * 109.47337 * 209.97248 * 1 2 3 33 33 H 1.08996 * 109.47383 * 329.97024 * 1 2 3 34 34 H 1.09005 * 109.59110 * 77.36825 * 7 6 2 35 35 H 1.08998 * 109.59672 * 316.92259 * 7 6 2 36 36 H 0.97001 * 120.00188 * 0.02562 * 12 10 8 37 37 H 1.09000 * 108.51836 * 304.32154 * 15 13 12 38 38 H 1.09008 * 108.51280 * 61.81439 * 15 13 12 39 39 H 1.08998 * 109.48585 * 34.95999 * 16 15 13 40 40 H 1.09004 * 109.49054 * 155.00175 * 16 15 13 41 41 H 1.09000 * 109.36645 * 331.68651 * 17 16 15 42 42 H 1.09004 * 109.36798 * 212.07513 * 17 16 15 43 43 H 1.09000 * 108.94752 * 198.74991 * 18 17 16 44 44 H 1.08997 * 108.94904 * 80.12136 * 18 17 16 45 45 H 0.97005 * 119.99187 * 179.97438 * 23 22 20 46 46 H 1.08996 * 109.45501 * 210.76576 * 28 19 18 47 47 H 1.09002 * 109.44746 * 330.69443 * 28 19 18 48 48 H 1.08994 * 109.50111 * 189.38331 * 29 8 7 49 49 H 1.09007 * 109.49537 * 309.48049 * 29 8 7 50 50 H 1.08996 * 109.72850 * 76.21042 * 30 5 4 51 51 H 1.09004 * 109.77519 * 315.55243 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5191 0.6813 -0.0005 5 6 3.5816 -0.6156 -0.0016 6 7 2.3075 -1.0833 0.0005 7 6 1.9367 -2.4980 0.0044 8 6 3.1550 -3.3251 0.4313 9 1 3.3617 -3.1480 1.4868 10 6 2.8688 -4.7887 0.2145 11 8 1.7990 -5.1369 -0.2382 12 7 3.8020 -5.7107 0.5236 13 6 3.5241 -7.1336 0.3124 14 1 2.9037 -7.2519 -0.5759 15 6 4.7918 -7.8533 0.1160 16 6 4.6301 -9.3395 -0.1882 17 6 4.5045 -10.1044 1.1063 18 6 3.0216 -10.2483 1.4939 19 7 2.2566 -9.0127 1.2357 20 6 1.0085 -9.1170 0.6822 21 1 0.6060 -8.3013 0.0999 22 6 0.2604 -10.2713 0.8693 23 7 0.5963 -11.1278 1.8107 24 14 -1.2227 -10.6092 -0.2149 25 1 -0.7912 -10.6875 -1.6337 26 1 -1.8455 -11.8966 0.1853 27 1 -2.2110 -9.5120 -0.0578 28 6 2.7708 -7.6968 1.5427 29 6 4.3720 -2.9143 -0.4026 30 6 4.8051 -1.4970 -0.0045 31 1 -0.3633 0.0005 -1.0277 32 1 -0.3634 -0.8902 0.5134 33 1 -0.3634 0.8897 0.5143 34 1 1.6244 -2.7968 -0.9963 35 1 1.1201 -2.6599 0.7080 36 1 4.6576 -5.4323 0.8860 37 1 5.3300 -7.3876 -0.7096 38 1 5.3929 -7.7484 1.0193 39 1 3.7336 -9.4922 -0.7892 40 1 5.5015 -9.6951 -0.7381 41 1 5.0340 -9.5697 1.8948 42 1 4.9443 -11.0944 0.9853 43 1 2.9550 -10.4908 2.5545 44 1 2.5828 -11.0631 0.9181 45 1 0.0734 -11.9342 1.9416 46 1 1.9436 -7.0339 1.7965 47 1 3.4552 -7.7628 2.3884 48 1 5.1905 -3.6101 -0.2189 49 1 4.1103 -2.9307 -1.4606 50 1 5.2484 -1.5144 0.9911 51 1 5.5310 -1.1179 -0.7238 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034537725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:45 Heat of formation + Delta-G solvation = 33.580542 kcal Electronic energy + Delta-G solvation = -31616.558109 eV Core-core repulsion = 27551.460242 eV Total energy + Delta-G solvation = -4065.097867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.37970 -41.31503 -39.46274 -37.77313 -36.24616 -35.20514 -34.76545 -32.99025 -32.71607 -31.63413 -31.07715 -28.35409 -27.91550 -26.44237 -25.56365 -24.72203 -24.15812 -22.45086 -21.68768 -21.57547 -20.86057 -20.41340 -18.60068 -18.54486 -17.73744 -17.46627 -17.15960 -16.69206 -16.48534 -16.15124 -15.75441 -15.59789 -15.27380 -15.04745 -14.93446 -14.71599 -14.67300 -14.20895 -14.06198 -13.98110 -13.78743 -13.49559 -13.22392 -13.18090 -13.07197 -12.98302 -12.81192 -12.63477 -12.48112 -12.30812 -12.21444 -12.06297 -12.03722 -11.62180 -11.44982 -11.39534 -11.35637 -11.16978 -11.10954 -10.84461 -10.49934 -10.10818 -10.03264 -8.62676 -7.87335 -5.32676 0.78311 1.34374 1.43060 1.43783 1.51332 1.60905 1.75693 2.16061 2.51139 3.06233 3.25303 3.26501 3.39178 3.54479 3.57052 3.75330 3.91834 3.95568 4.00426 4.12944 4.16135 4.24704 4.30218 4.32653 4.46351 4.54269 4.56016 4.60488 4.65679 4.75810 4.79189 4.82462 4.85758 4.95387 5.00986 5.03086 5.05762 5.07655 5.16462 5.21946 5.25922 5.30828 5.38881 5.44749 5.64371 5.69169 5.73080 5.84614 5.85674 6.40852 6.61144 7.18940 7.32498 7.65717 7.96024 8.30481 9.16752 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.002728 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.360254 B =10263.303575 C =11824.122060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.177 3.823 3 N -0.344 5.344 4 N -0.335 5.335 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.123 3.877 8 C -0.109 4.109 9 H 0.133 0.867 10 C 0.520 3.480 11 O -0.579 6.579 12 N -0.701 5.701 13 C 0.135 3.865 14 H 0.047 0.953 15 C -0.109 4.109 16 C -0.099 4.099 17 C -0.131 4.131 18 C 0.184 3.816 19 N -0.597 5.597 20 C -0.260 4.260 21 H 0.052 0.948 22 C -0.043 4.043 23 N -0.932 5.932 24 Si 0.956 3.044 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.158 3.842 29 C -0.109 4.109 30 C -0.026 4.026 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.417 0.583 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.037 0.963 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.067 0.933 43 H -0.007 1.007 44 H 0.037 0.963 45 H 0.249 0.751 46 H 0.016 0.984 47 H 0.049 0.951 48 H 0.125 0.875 49 H 0.071 0.929 50 H 0.123 0.877 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.613 15.112 -2.683 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 N -0.185 5.185 4 N -0.173 5.173 5 C -0.095 4.095 6 N -0.160 5.160 7 C 0.001 3.999 8 C -0.131 4.131 9 H 0.150 0.850 10 C 0.306 3.694 11 O -0.458 6.458 12 N -0.353 5.353 13 C 0.028 3.972 14 H 0.065 0.935 15 C -0.147 4.147 16 C -0.137 4.137 17 C -0.169 4.169 18 C 0.059 3.941 19 N -0.319 5.319 20 C -0.391 4.391 21 H 0.069 0.931 22 C -0.239 4.239 23 N -0.578 5.578 24 Si 0.784 3.216 25 H -0.206 1.206 26 H -0.216 1.216 27 H -0.208 1.208 28 C 0.029 3.971 29 C -0.148 4.148 30 C -0.065 4.065 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.255 0.745 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.011 0.989 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.035 0.965 47 H 0.067 0.933 48 H 0.143 0.857 49 H 0.090 0.910 50 H 0.141 0.859 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.213 16.146 -2.926 20.455 hybrid contribution -1.685 -1.631 -0.210 2.355 sum 10.528 14.515 -3.136 18.203 Atomic orbital electron populations 1.20407 0.81395 1.05670 1.05235 1.25310 0.98493 0.82458 1.02821 1.74386 0.96762 1.25321 1.21991 1.73928 1.12657 1.09910 1.20814 1.25508 0.88446 0.92305 1.03233 1.46114 1.06913 1.08721 1.54205 1.21801 0.98573 0.74539 1.05030 1.21560 0.96500 0.90049 1.04974 0.84962 1.20520 0.83722 0.88114 0.77034 1.90798 1.26079 1.82689 1.46267 1.45847 1.18704 1.05669 1.65038 1.20692 0.97714 0.79442 0.99384 0.93461 1.20512 0.95646 0.95283 1.03234 1.20808 1.01141 0.94571 0.97218 1.21934 0.96366 1.00672 0.97956 1.20853 0.89360 0.87658 0.96200 1.43710 1.14526 1.01061 1.72606 1.19326 0.93537 1.01616 1.24592 0.93051 1.25630 1.00391 0.99188 0.98691 1.70208 1.42133 1.13055 1.32392 0.85525 0.80053 0.76809 0.79188 1.20589 1.21577 1.20817 1.21020 0.95465 0.85963 0.94632 1.21754 0.96631 0.96728 0.99643 1.20459 0.89612 0.89968 1.06486 0.88365 0.88888 0.87898 0.88773 0.87661 0.74457 0.90247 0.89993 0.94405 0.90040 0.91441 0.91425 0.98865 0.94415 0.94172 0.96501 0.93292 0.85716 0.91029 0.85943 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.29 71.23 0.73 -0.25 16 2 C 0.18 4.02 8.07 138.14 1.11 5.13 16 3 N -0.34 -10.01 12.23 -50.46 -0.62 -10.62 16 4 N -0.33 -9.39 12.21 -50.28 -0.61 -10.00 16 5 C 0.17 3.56 7.75 138.13 1.07 4.63 16 6 N -0.47 -9.40 3.11 -504.68 -1.57 -10.97 16 7 C 0.12 2.17 5.48 86.53 0.47 2.64 16 8 C -0.11 -1.52 2.54 -11.39 -0.03 -1.55 16 9 H 0.13 1.35 8.12 -2.38 -0.02 1.33 16 10 C 0.52 11.93 7.12 87.66 0.62 12.56 16 11 O -0.58 -20.20 15.48 -3.01 -0.05 -20.24 16 12 N -0.70 -14.02 4.88 -448.27 -2.19 -16.21 16 13 C 0.14 4.03 2.34 43.79 0.10 4.13 16 14 H 0.05 1.85 7.56 -2.39 -0.02 1.84 16 15 C -0.11 -2.52 4.55 28.61 0.13 -2.39 16 16 C -0.10 -2.85 5.51 29.76 0.16 -2.68 16 17 C -0.13 -4.20 5.71 30.22 0.17 -4.03 16 18 C 0.18 8.47 4.67 86.49 0.40 8.87 16 19 N -0.60 -28.85 2.27 -698.37 -1.59 -30.44 16 20 C -0.26 -14.51 9.44 84.03 0.79 -13.71 16 21 H 0.05 2.99 7.88 -2.91 -0.02 2.96 16 22 C -0.04 -2.46 4.87 84.86 0.41 -2.04 16 23 N -0.93 -54.85 11.01 21.65 0.24 -54.61 16 24 Si 0.96 46.04 29.58 68.60 2.03 48.06 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 27 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 28 C 0.16 6.14 5.24 87.38 0.46 6.60 16 29 C -0.11 -0.96 5.22 30.79 0.16 -0.79 16 30 C -0.03 -0.26 6.33 30.03 0.19 -0.07 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.09 7.75 -2.39 -0.02 1.07 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.87 7.79 -2.38 -0.02 1.85 16 35 H 0.11 1.83 7.84 -2.39 -0.02 1.81 16 36 H 0.42 4.44 7.92 -92.71 -0.73 3.71 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.52 7.36 -2.38 -0.02 1.50 16 39 H 0.04 1.40 7.48 -2.39 -0.02 1.38 16 40 H 0.08 1.84 8.14 -2.38 -0.02 1.83 16 41 H 0.07 1.89 7.32 -2.39 -0.02 1.87 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 43 H -0.01 -0.35 8.03 -2.39 -0.02 -0.36 16 44 H 0.04 1.99 6.33 -2.39 -0.02 1.98 16 45 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 46 H 0.02 0.74 7.98 -2.39 -0.02 0.72 16 47 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 48 H 0.12 0.36 7.32 -2.39 -0.02 0.34 16 49 H 0.07 0.81 8.12 -2.38 -0.02 0.79 16 50 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -81.89 395.39 2.82 -79.06 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.20 Total: 8.95 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 6.97 Total: 17.03 kcal Atomic # 7 Polarization: -126.53 SS G_CDS: -6.34 Total: -132.86 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.24 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -81.89 2.82 -79.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034537725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.644 kcal (2) G-P(sol) polarization free energy of solvation -81.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds