Wall clock time and date at job start Wed Apr 1 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33476 * 125.49736 * 2 1 4 4 C 1.30330 * 109.72417 * 179.97438 * 3 2 1 5 5 N 1.34684 * 108.04487 * 359.94422 * 4 3 2 6 6 N 1.30977 * 125.49974 * 179.97438 * 2 1 3 7 7 C 1.46297 * 125.04427 * 180.08455 * 5 4 3 8 8 C 1.53304 * 108.77371 * 17.04094 * 7 5 4 9 9 H 1.09003 * 109.46204 * 69.87261 * 8 7 5 10 10 C 1.50696 * 109.46855 * 189.85521 * 8 7 5 11 11 O 1.21287 * 119.99595 * 120.01871 * 10 8 7 12 12 N 1.34780 * 120.00373 * 300.02914 * 10 8 7 13 13 C 1.46506 * 120.00088 * 180.02562 * 12 10 8 14 14 H 1.09000 * 109.46872 * 324.99405 * 13 12 10 15 15 C 1.52997 * 109.47277 * 84.99368 * 13 12 10 16 16 C 1.52996 * 109.47165 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46972 * 300.00293 * 16 15 13 18 18 H 1.09000 * 109.46986 * 299.99742 * 17 16 15 19 19 N 1.46496 * 109.47428 * 180.02562 * 17 16 15 20 20 C 1.36941 * 120.00340 * 84.99574 * 19 17 16 21 21 H 1.08004 * 119.99649 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99905 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99469 * 179.97438 * 22 20 19 24 24 Si 1.86790 * 120.00194 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47310 * 90.00535 * 24 22 20 26 26 H 1.48505 * 109.47147 * 210.00591 * 24 22 20 27 27 H 1.48500 * 109.47475 * 330.00405 * 24 22 20 28 28 C 1.52997 * 109.47415 * 59.99860 * 17 16 15 29 29 C 1.52999 * 109.46691 * 204.99775 * 13 12 10 30 30 C 1.53158 * 109.49332 * 309.86721 * 8 7 5 31 31 C 1.50927 * 127.90220 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.46749 * 270.05968 * 1 2 3 33 33 H 1.08993 * 109.46723 * 30.05332 * 1 2 3 34 34 H 1.08992 * 109.46954 * 150.05435 * 1 2 3 35 35 H 1.09005 * 109.59008 * 257.25796 * 7 5 4 36 36 H 1.09004 * 109.58604 * 136.83125 * 7 5 4 37 37 H 0.97000 * 119.99750 * 359.97438 * 12 10 8 38 38 H 1.09000 * 109.47140 * 60.00200 * 15 13 12 39 39 H 1.09001 * 109.47375 * 300.00183 * 15 13 12 40 40 H 1.08992 * 109.47534 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.47134 * 59.99508 * 16 15 13 42 42 H 0.97005 * 119.99981 * 264.99973 * 19 17 16 43 43 H 0.97000 * 119.99881 * 179.97438 * 23 22 20 44 44 H 1.09001 * 109.46922 * 180.02562 * 28 17 16 45 45 H 1.09000 * 109.47140 * 59.99976 * 28 17 16 46 46 H 1.08993 * 109.47839 * 59.99891 * 29 13 12 47 47 H 1.09000 * 109.47160 * 299.99453 * 29 13 12 48 48 H 1.08998 * 109.50304 * 189.10579 * 30 8 7 49 49 H 1.08999 * 109.50476 * 309.19438 * 30 8 7 50 50 H 1.08996 * 109.71807 * 76.30014 * 31 4 3 51 51 H 1.09000 * 109.71769 * 315.65304 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0867 0.0000 4 6 3.5363 0.7324 0.0005 5 7 3.5897 -0.6134 0.0022 6 7 2.2676 -1.0663 0.0005 7 6 4.8198 -1.4053 0.0050 8 6 5.9852 -0.5050 0.4312 9 1 5.8840 -0.2557 1.4875 10 6 7.2874 -1.2301 0.2089 11 8 8.1200 -0.7653 -0.5406 12 7 7.5267 -2.3953 0.8427 13 6 8.7929 -3.0999 0.6270 14 1 9.1137 -2.9626 -0.4057 15 6 9.8573 -2.5367 1.5708 16 6 11.1797 -3.2722 1.3451 17 6 10.9878 -4.7641 1.6249 18 1 10.6672 -4.9018 2.6575 19 7 12.2542 -5.4683 1.4093 20 6 13.1815 -5.5331 2.4149 21 1 12.9789 -5.0654 3.3671 22 6 14.3817 -6.1999 2.2104 23 7 15.2730 -6.2617 3.1768 24 14 14.7316 -7.0095 0.5638 25 1 15.4058 -6.0365 -0.3328 26 1 15.6129 -8.1871 0.7685 27 1 13.4543 -7.4486 -0.0533 28 6 9.9235 -5.3273 0.6810 29 6 8.6005 -4.5917 0.9072 30 6 5.9684 0.7808 -0.4007 31 6 4.7523 1.6264 0.0002 32 1 -0.3633 0.0011 1.0277 33 1 -0.3632 0.8895 -0.5146 34 1 -0.3633 -0.8904 -0.5130 35 1 5.0061 -1.7947 -0.9959 36 1 4.7205 -2.2321 0.7084 37 1 6.8609 -2.7669 1.4423 38 1 9.5365 -2.6740 2.6035 39 1 9.9943 -1.4740 1.3712 40 1 11.9379 -2.8713 2.0177 41 1 11.5003 -3.1346 0.3124 42 1 12.4360 -5.8887 0.5542 43 1 16.1116 -6.7280 3.0341 44 1 9.7865 -6.3900 0.8807 45 1 10.2441 -5.1896 -0.3516 46 1 7.8423 -4.9929 0.2348 47 1 8.2797 -4.7290 1.9398 48 1 6.8817 1.3461 -0.2153 49 1 5.9049 0.5287 -1.4592 50 1 4.9044 2.0407 0.9968 51 1 4.6141 2.4350 -0.7176 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034697253.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:40 Heat of formation + Delta-G solvation = 42.762407 kcal Electronic energy + Delta-G solvation = -30271.402720 eV Core-core repulsion = 26206.703008 eV Total energy + Delta-G solvation = -4064.699712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.78576 -40.56145 -38.47766 -36.98701 -35.16547 -33.73326 -33.21614 -32.39860 -31.09882 -30.57154 -30.11846 -28.92087 -27.65345 -24.90492 -24.10192 -23.11035 -22.54146 -21.39369 -20.99835 -20.72136 -20.01627 -19.56700 -17.84950 -17.43181 -17.16979 -16.57005 -16.36269 -15.79850 -15.20343 -14.96973 -14.78254 -14.64718 -14.52577 -14.23664 -13.93350 -13.67852 -13.64257 -13.28443 -13.03893 -12.99604 -12.84254 -12.71403 -12.37906 -12.23211 -12.18452 -12.05517 -11.84615 -11.74844 -11.46391 -11.25429 -10.97083 -10.91317 -10.75147 -10.43519 -10.31125 -10.27089 -10.12302 -10.05789 -9.89788 -9.69224 -9.60003 -9.20165 -8.91482 -7.28668 -5.78841 -3.14330 1.18440 1.70037 2.24483 2.46937 2.74831 3.35914 3.39089 3.44155 3.45551 3.64687 3.92745 3.98146 4.24198 4.34357 4.50617 4.57496 4.64836 4.66287 4.75477 4.82334 4.86386 4.94650 5.03060 5.14453 5.16854 5.35999 5.37561 5.39904 5.40950 5.42967 5.46906 5.54215 5.56242 5.67349 5.70911 5.83741 5.93307 6.00951 6.05672 6.07685 6.10835 6.27509 6.33196 6.36394 6.42167 6.56262 6.83635 6.99333 7.14971 7.72877 7.83976 7.97586 8.40402 9.19074 9.91820 10.11509 11.39518 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030084 B = 0.001764 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.496627 B =15867.578125 C =16274.041608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.218 3.782 3 N -0.538 5.538 4 C 0.281 3.719 5 N -0.377 5.377 6 N -0.314 5.314 7 C 0.140 3.860 8 C -0.126 4.126 9 H 0.113 0.887 10 C 0.524 3.476 11 O -0.523 6.523 12 N -0.722 5.722 13 C 0.144 3.856 14 H 0.089 0.911 15 C -0.124 4.124 16 C -0.133 4.133 17 C 0.181 3.819 18 H 0.055 0.945 19 N -0.749 5.749 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.124 4.124 29 C -0.119 4.119 30 C -0.109 4.109 31 C -0.042 4.042 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.398 0.602 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.102 0.898 49 H 0.081 0.919 50 H 0.103 0.897 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.293 13.841 -6.439 32.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.064 4.064 3 N -0.266 5.266 4 C 0.004 3.996 5 N -0.168 5.168 6 N -0.143 5.143 7 C 0.017 3.983 8 C -0.149 4.149 9 H 0.131 0.869 10 C 0.307 3.693 11 O -0.398 6.398 12 N -0.373 5.373 13 C 0.040 3.960 14 H 0.107 0.893 15 C -0.163 4.163 16 C -0.173 4.173 17 C 0.072 3.928 18 H 0.073 0.927 19 N -0.391 5.391 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.582 5.582 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.163 4.163 29 C -0.158 4.158 30 C -0.147 4.147 31 C -0.082 4.082 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.232 0.768 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.120 0.880 49 H 0.100 0.900 50 H 0.121 0.879 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -27.875 13.681 -6.765 31.780 hybrid contribution 0.362 -0.883 -0.731 1.202 sum -27.513 12.799 -7.495 31.256 Atomic orbital electron populations 1.20090 0.83767 1.04059 1.03763 1.24460 0.98305 0.85473 0.98182 1.70203 0.99849 1.30816 1.25779 1.24378 0.95086 0.83935 0.96180 1.50104 1.05548 1.05857 1.55261 1.77959 0.86402 1.22484 1.27452 1.21720 0.78519 0.93573 1.04481 1.21783 0.92351 0.96886 1.03836 0.86922 1.19953 0.87721 0.81193 0.80402 1.90768 1.47068 1.65624 1.36385 1.46231 1.20461 1.23081 1.47504 1.21184 0.82511 0.91176 1.01103 0.89272 1.21892 0.95645 0.99919 0.98850 1.22189 0.95294 0.97944 1.01922 1.20215 0.85663 0.89859 0.97058 0.92721 1.42785 1.16735 1.65074 1.14530 1.19074 0.94961 1.29277 0.93989 0.89243 1.24674 0.96628 1.00677 0.97195 1.69701 1.08826 1.47844 1.31821 0.86549 0.77671 0.79361 0.84930 1.21117 1.21792 1.20344 1.21803 0.94031 0.99854 1.00602 1.21753 0.98662 0.93264 1.02091 1.21598 0.98753 0.93914 1.00434 1.20474 0.86535 0.96048 1.05112 0.89818 0.89539 0.89993 0.88695 0.87998 0.76765 0.92044 0.92156 0.91218 0.92562 0.80693 0.93082 0.91225 0.92060 0.91751 0.91283 0.87969 0.90043 0.87873 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.22 2.24 8.15 -156.42 -1.27 0.96 16 3 N -0.54 -5.84 11.18 -8.02 -0.09 -5.93 16 4 C 0.28 2.54 7.72 -155.77 -1.20 1.34 16 5 N -0.38 -3.47 4.04 -58.29 -0.24 -3.71 16 6 N -0.31 -3.48 12.74 32.51 0.41 -3.07 16 7 C 0.14 0.89 6.42 -3.99 -0.03 0.86 16 8 C -0.13 -0.74 2.54 -91.53 -0.23 -0.98 16 9 H 0.11 0.51 8.12 -51.93 -0.42 0.09 16 10 C 0.52 4.60 7.10 -10.99 -0.08 4.52 16 11 O -0.52 -6.75 15.50 5.55 0.09 -6.67 16 12 N -0.72 -5.71 4.98 -53.80 -0.27 -5.98 16 13 C 0.14 1.55 2.45 -67.93 -0.17 1.39 16 14 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 15 C -0.12 -1.59 5.49 -26.73 -0.15 -1.74 16 16 C -0.13 -2.19 5.50 -26.73 -0.15 -2.33 16 17 C 0.18 3.23 2.77 -67.93 -0.19 3.04 16 18 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 19 N -0.75 -17.10 4.93 -53.43 -0.26 -17.37 16 20 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 21 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 22 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 23 N -0.93 -29.07 13.97 55.49 0.78 -28.30 16 24 Si 0.88 21.91 27.73 -169.99 -4.71 17.19 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 28 C -0.12 -1.73 5.39 -26.70 -0.14 -1.87 16 29 C -0.12 -1.22 5.40 -26.70 -0.14 -1.36 16 30 C -0.11 -0.64 4.68 -26.42 -0.12 -0.76 16 31 C -0.04 -0.23 6.33 -27.54 -0.17 -0.40 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.62 8.12 -51.93 -0.42 0.19 16 36 H 0.10 0.49 7.88 -51.93 -0.41 0.09 16 37 H 0.40 2.05 8.25 -40.82 -0.34 1.72 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.36 8.14 5.66 -40.82 -0.23 7.91 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.10 0.62 7.80 -51.93 -0.41 0.21 16 49 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 50 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 404.00 15.07 6.09 6.09 Total: -1.00 -36.02 404.00 -10.68 -46.69 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -8.55 Total: 5.20 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.92 Total: -4.16 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.33 Total: -64.35 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: 0.09 Total: -6.67 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.02 -10.68 -46.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034697253.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.457 kcal (2) G-P(sol) polarization free energy of solvation -36.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds