Wall clock time and date at job start Wed Apr 1 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33476 * 125.49736 * 2 1 4 4 C 1.30330 * 109.72417 * 179.97438 * 3 2 1 5 5 N 1.34684 * 108.04487 * 359.94422 * 4 3 2 6 6 N 1.30977 * 125.49974 * 179.97438 * 2 1 3 7 7 C 1.46297 * 125.04427 * 180.08455 * 5 4 3 8 8 C 1.53304 * 108.77371 * 17.04094 * 7 5 4 9 9 H 1.09003 * 109.46204 * 69.87261 * 8 7 5 10 10 C 1.50696 * 109.46855 * 189.85521 * 8 7 5 11 11 O 1.21287 * 119.99595 * 120.01871 * 10 8 7 12 12 N 1.34780 * 120.00373 * 300.02914 * 10 8 7 13 13 C 1.46506 * 120.00088 * 180.02562 * 12 10 8 14 14 H 1.09000 * 109.46872 * 324.99405 * 13 12 10 15 15 C 1.52997 * 109.47277 * 84.99368 * 13 12 10 16 16 C 1.52996 * 109.47165 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46972 * 300.00293 * 16 15 13 18 18 H 1.09000 * 109.46986 * 299.99742 * 17 16 15 19 19 N 1.46496 * 109.47428 * 180.02562 * 17 16 15 20 20 C 1.36941 * 120.00340 * 84.99574 * 19 17 16 21 21 H 1.08004 * 119.99649 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99905 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99469 * 179.97438 * 22 20 19 24 24 Si 1.86790 * 120.00194 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47310 * 90.00535 * 24 22 20 26 26 H 1.48505 * 109.47147 * 210.00591 * 24 22 20 27 27 H 1.48500 * 109.47475 * 330.00405 * 24 22 20 28 28 C 1.52997 * 109.47415 * 59.99860 * 17 16 15 29 29 C 1.52999 * 109.46691 * 204.99775 * 13 12 10 30 30 C 1.53158 * 109.49332 * 309.86721 * 8 7 5 31 31 C 1.50927 * 127.90220 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.46749 * 270.05968 * 1 2 3 33 33 H 1.08993 * 109.46723 * 30.05332 * 1 2 3 34 34 H 1.08992 * 109.46954 * 150.05435 * 1 2 3 35 35 H 1.09005 * 109.59008 * 257.25796 * 7 5 4 36 36 H 1.09004 * 109.58604 * 136.83125 * 7 5 4 37 37 H 0.97000 * 119.99750 * 359.97438 * 12 10 8 38 38 H 1.09000 * 109.47140 * 60.00200 * 15 13 12 39 39 H 1.09001 * 109.47375 * 300.00183 * 15 13 12 40 40 H 1.08992 * 109.47534 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.47134 * 59.99508 * 16 15 13 42 42 H 0.97005 * 119.99981 * 264.99973 * 19 17 16 43 43 H 0.97000 * 119.99881 * 179.97438 * 23 22 20 44 44 H 1.09001 * 109.46922 * 180.02562 * 28 17 16 45 45 H 1.09000 * 109.47140 * 59.99976 * 28 17 16 46 46 H 1.08993 * 109.47839 * 59.99891 * 29 13 12 47 47 H 1.09000 * 109.47160 * 299.99453 * 29 13 12 48 48 H 1.08998 * 109.50304 * 189.10579 * 30 8 7 49 49 H 1.08999 * 109.50476 * 309.19438 * 30 8 7 50 50 H 1.08996 * 109.71807 * 76.30014 * 31 4 3 51 51 H 1.09000 * 109.71769 * 315.65304 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0867 0.0000 4 6 3.5363 0.7324 0.0005 5 7 3.5897 -0.6134 0.0022 6 7 2.2676 -1.0663 0.0005 7 6 4.8198 -1.4053 0.0050 8 6 5.9852 -0.5050 0.4312 9 1 5.8840 -0.2557 1.4875 10 6 7.2874 -1.2301 0.2089 11 8 8.1200 -0.7653 -0.5406 12 7 7.5267 -2.3953 0.8427 13 6 8.7929 -3.0999 0.6270 14 1 9.1137 -2.9626 -0.4057 15 6 9.8573 -2.5367 1.5708 16 6 11.1797 -3.2722 1.3451 17 6 10.9878 -4.7641 1.6249 18 1 10.6672 -4.9018 2.6575 19 7 12.2542 -5.4683 1.4093 20 6 13.1815 -5.5331 2.4149 21 1 12.9789 -5.0654 3.3671 22 6 14.3817 -6.1999 2.2104 23 7 15.2730 -6.2617 3.1768 24 14 14.7316 -7.0095 0.5638 25 1 15.4058 -6.0365 -0.3328 26 1 15.6129 -8.1871 0.7685 27 1 13.4543 -7.4486 -0.0533 28 6 9.9235 -5.3273 0.6810 29 6 8.6005 -4.5917 0.9072 30 6 5.9684 0.7808 -0.4007 31 6 4.7523 1.6264 0.0002 32 1 -0.3633 0.0011 1.0277 33 1 -0.3632 0.8895 -0.5146 34 1 -0.3633 -0.8904 -0.5130 35 1 5.0061 -1.7947 -0.9959 36 1 4.7205 -2.2321 0.7084 37 1 6.8609 -2.7669 1.4423 38 1 9.5365 -2.6740 2.6035 39 1 9.9943 -1.4740 1.3712 40 1 11.9379 -2.8713 2.0177 41 1 11.5003 -3.1346 0.3124 42 1 12.4360 -5.8887 0.5542 43 1 16.1116 -6.7280 3.0341 44 1 9.7865 -6.3900 0.8807 45 1 10.2441 -5.1896 -0.3516 46 1 7.8423 -4.9929 0.2348 47 1 8.2797 -4.7290 1.9398 48 1 6.8817 1.3461 -0.2153 49 1 5.9049 0.5287 -1.4592 50 1 4.9044 2.0407 0.9968 51 1 4.6141 2.4350 -0.7176 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034697253.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:38 Heat of formation + Delta-G solvation = 18.320109 kcal Electronic energy + Delta-G solvation = -30272.462617 eV Core-core repulsion = 26206.703008 eV Total energy + Delta-G solvation = -4065.759609 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.42802 -41.33609 -39.56312 -37.68289 -36.47990 -34.74998 -34.23626 -33.20982 -32.69242 -31.68924 -30.84379 -29.63454 -28.81991 -25.59102 -25.25173 -24.29219 -23.63636 -22.45189 -21.84036 -21.48669 -21.10715 -20.37433 -19.54515 -18.32476 -17.86082 -17.25981 -17.15990 -16.77090 -16.42469 -16.20025 -15.62457 -15.39438 -15.26125 -15.15123 -15.02443 -14.86603 -14.58967 -14.36804 -14.23196 -13.90849 -13.67361 -13.50865 -13.42225 -13.28721 -13.09955 -12.92665 -12.82372 -12.70198 -12.46838 -12.30229 -12.23139 -12.05086 -11.96977 -11.94019 -11.79118 -11.47923 -11.22660 -11.15063 -10.95525 -10.83743 -10.79111 -10.31955 -10.06391 -9.29036 -8.01595 -5.34160 0.52956 1.10765 1.37599 1.40950 1.48179 1.56910 1.79681 2.05379 2.49021 2.92261 3.11515 3.29906 3.39740 3.47202 3.61255 3.71517 3.75760 3.82511 3.86637 4.04509 4.18862 4.22098 4.26210 4.33325 4.36658 4.37775 4.51844 4.54524 4.59724 4.62677 4.73368 4.75749 4.85632 4.88999 4.92725 4.94499 4.95469 5.09912 5.12035 5.15679 5.24500 5.27921 5.30156 5.45809 5.46793 5.51448 5.61604 5.75544 5.79382 6.23220 6.50348 7.05821 7.09750 7.18587 7.87380 8.05326 9.20057 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030084 B = 0.001764 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.496627 B =15867.578125 C =16274.041608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.205 3.795 3 N -0.566 5.566 4 C 0.276 3.724 5 N -0.381 5.381 6 N -0.344 5.344 7 C 0.138 3.862 8 C -0.112 4.112 9 H 0.135 0.865 10 C 0.528 3.472 11 O -0.566 6.566 12 N -0.709 5.709 13 C 0.153 3.847 14 H 0.073 0.927 15 C -0.113 4.113 16 C -0.125 4.125 17 C 0.174 3.826 18 H 0.045 0.955 19 N -0.754 5.754 20 C -0.226 4.226 21 H 0.056 0.944 22 C -0.067 4.067 23 N -0.986 5.986 24 Si 0.954 3.046 25 H -0.283 1.283 26 H -0.297 1.297 27 H -0.249 1.249 28 C -0.117 4.117 29 C -0.108 4.108 30 C -0.105 4.105 31 C -0.035 4.035 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.416 0.584 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.049 0.951 42 H 0.364 0.636 43 H 0.256 0.744 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.102 0.898 49 H 0.069 0.931 50 H 0.123 0.877 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.959 13.824 -7.518 34.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 N -0.296 5.296 4 C 0.000 4.000 5 N -0.172 5.172 6 N -0.173 5.173 7 C 0.016 3.984 8 C -0.134 4.134 9 H 0.153 0.847 10 C 0.313 3.687 11 O -0.444 6.444 12 N -0.360 5.360 13 C 0.048 3.952 14 H 0.091 0.909 15 C -0.153 4.153 16 C -0.166 4.166 17 C 0.066 3.934 18 H 0.063 0.937 19 N -0.396 5.396 20 C -0.357 4.357 21 H 0.074 0.926 22 C -0.258 4.258 23 N -0.636 5.636 24 Si 0.782 3.218 25 H -0.209 1.209 26 H -0.224 1.224 27 H -0.173 1.173 28 C -0.156 4.156 29 C -0.147 4.147 30 C -0.143 4.143 31 C -0.074 4.074 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.254 0.746 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.197 0.803 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.103 0.897 48 H 0.121 0.879 49 H 0.088 0.912 50 H 0.141 0.859 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -30.627 13.667 -7.846 34.444 hybrid contribution 1.164 -0.782 -0.329 1.440 sum -29.463 12.885 -8.175 33.180 Atomic orbital electron populations 1.20233 0.81670 1.04858 1.04777 1.25149 0.99770 0.85209 0.97499 1.70215 1.00796 1.31528 1.27024 1.24983 0.95582 0.84369 0.95082 1.50228 1.05618 1.06190 1.55116 1.77885 0.87325 1.23360 1.28713 1.21873 0.77616 0.93867 1.05038 1.21679 0.90365 0.96258 1.05104 0.84699 1.20342 0.88089 0.80915 0.79362 1.90764 1.48697 1.66670 1.38219 1.46010 1.19723 1.22690 1.47584 1.20877 0.83060 0.91843 0.99431 0.90887 1.21766 0.94371 0.98985 1.00156 1.22006 0.96665 0.97403 1.00528 1.20496 0.84811 0.90196 0.97896 0.93664 1.42844 1.17634 1.65681 1.13480 1.19040 0.95710 1.27233 0.93753 0.92618 1.25498 0.96673 1.02375 1.01259 1.69886 1.09498 1.49784 1.34471 0.85418 0.78397 0.77850 0.80165 1.20948 1.22412 1.17299 1.21706 0.94375 1.00192 0.99335 1.21677 0.97092 0.92012 1.03875 1.21547 0.98912 0.94046 0.99812 1.20598 0.84723 0.95539 1.06548 0.88598 0.88762 0.89126 0.88911 0.86064 0.74632 0.90982 0.92865 0.94598 0.93216 0.80292 0.93496 0.91040 0.91855 0.88917 0.89706 0.87905 0.91188 0.85891 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 71.24 0.75 0.12 16 2 C 0.21 4.00 8.15 138.48 1.13 5.13 16 3 N -0.57 -11.65 11.18 -179.30 -2.01 -13.65 16 4 C 0.28 4.53 7.72 138.36 1.07 5.60 16 5 N -0.38 -6.32 4.04 -338.33 -1.37 -7.69 16 6 N -0.34 -7.18 12.74 -51.07 -0.65 -7.83 16 7 C 0.14 1.40 6.42 86.52 0.56 1.95 16 8 C -0.11 -1.01 2.54 -11.39 -0.03 -1.04 16 9 H 0.14 0.70 8.12 -2.39 -0.02 0.68 16 10 C 0.53 7.98 7.10 87.66 0.62 8.60 16 11 O -0.57 -13.81 15.50 -3.05 -0.05 -13.86 16 12 N -0.71 -8.89 4.98 -442.52 -2.20 -11.09 16 13 C 0.15 2.90 2.45 44.99 0.11 3.01 16 14 H 0.07 1.70 7.58 -2.39 -0.02 1.69 16 15 C -0.11 -2.77 5.49 30.59 0.17 -2.60 16 16 C -0.13 -4.14 5.50 30.59 0.17 -3.97 16 17 C 0.17 6.05 2.77 44.99 0.12 6.18 16 18 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 19 N -0.75 -34.17 4.93 -322.94 -1.59 -35.76 16 20 C -0.23 -12.76 10.41 84.03 0.87 -11.88 16 21 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 22 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 23 N -0.99 -63.32 13.97 21.65 0.30 -63.01 16 24 Si 0.95 45.45 27.73 68.60 1.90 47.35 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 27 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 28 C -0.12 -2.96 5.39 30.61 0.17 -2.80 16 29 C -0.11 -1.81 5.40 30.61 0.17 -1.65 16 30 C -0.10 -1.03 4.68 30.80 0.14 -0.89 16 31 C -0.03 -0.30 6.33 30.07 0.19 -0.11 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 1.00 8.12 -2.38 -0.02 0.99 16 36 H 0.12 0.75 7.88 -2.38 -0.02 0.73 16 37 H 0.42 2.48 8.25 -92.71 -0.77 1.71 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.36 15.89 5.66 -92.70 -0.52 15.36 16 43 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 46 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.10 1.05 7.80 -2.39 -0.02 1.03 16 49 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 50 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -81.49 404.00 0.60 -80.88 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.41 Total: 22.48 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 6.67 Total: 2.18 kcal Atomic # 7 Polarization: -131.52 SS G_CDS: -7.51 Total: -139.04 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.05 Total: -13.86 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.90 Total: 47.35 kcal Total: -81.49 0.60 -80.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034697253.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.204 kcal (2) G-P(sol) polarization free energy of solvation -81.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds