Wall clock time and date at job start Wed Apr 1 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33473 * 125.49531 * 2 1 4 4 C 1.30323 * 109.72756 * 180.24276 * 3 2 1 5 5 N 1.34680 * 108.04573 * 0.04956 * 4 3 2 6 6 N 1.30974 * 125.50022 * 180.30204 * 2 1 3 7 7 C 1.46296 * 125.05200 * 179.90438 * 5 4 3 8 8 C 1.53306 * 108.77369 * 342.99426 * 7 5 4 9 9 H 1.08999 * 109.46405 * 290.11343 * 8 7 5 10 10 C 1.50699 * 109.46699 * 170.12486 * 8 7 5 11 11 O 1.21283 * 119.99701 * 239.99184 * 10 8 7 12 12 N 1.34773 * 119.99979 * 59.99796 * 10 8 7 13 13 C 1.46504 * 119.99653 * 180.02562 * 12 10 8 14 14 H 1.08994 * 109.47553 * 324.99825 * 13 12 10 15 15 C 1.53005 * 109.47186 * 85.00053 * 13 12 10 16 16 C 1.52998 * 109.47022 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47243 * 299.99926 * 16 15 13 18 18 H 1.09004 * 109.46799 * 300.00375 * 17 16 15 19 19 N 1.46500 * 109.47126 * 180.02562 * 17 16 15 20 20 C 1.36930 * 120.00357 * 84.99467 * 19 17 16 21 21 H 1.08003 * 120.00067 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00097 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00022 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47193 * 90.00332 * 24 22 20 26 26 H 1.48507 * 109.47190 * 209.99992 * 24 22 20 27 27 H 1.48495 * 109.47125 * 330.00347 * 24 22 20 28 28 C 1.53001 * 109.47169 * 59.99746 * 17 16 15 29 29 C 1.52998 * 109.47246 * 300.00253 * 28 17 16 30 30 C 1.53154 * 109.49304 * 50.11586 * 8 7 5 31 31 C 1.50924 * 127.90665 * 180.08448 * 4 3 2 32 32 H 1.08999 * 109.47559 * 269.69786 * 1 2 3 33 33 H 1.09007 * 109.47373 * 29.69937 * 1 2 3 34 34 H 1.09003 * 109.47018 * 149.69731 * 1 2 3 35 35 H 1.09002 * 109.58455 * 102.77506 * 7 5 4 36 36 H 1.08990 * 109.58995 * 223.20477 * 7 5 4 37 37 H 0.96994 * 120.00107 * 359.97438 * 12 10 8 38 38 H 1.08997 * 109.46371 * 299.99604 * 15 13 12 39 39 H 1.08994 * 109.47061 * 59.99471 * 15 13 12 40 40 H 1.08998 * 109.47218 * 179.97438 * 16 15 13 41 41 H 1.09005 * 109.47011 * 59.99906 * 16 15 13 42 42 H 0.97011 * 119.99550 * 264.99593 * 19 17 16 43 43 H 0.96995 * 120.00261 * 179.97438 * 23 22 20 44 44 H 1.09004 * 109.47040 * 179.97438 * 28 17 16 45 45 H 1.09004 * 109.46746 * 60.00597 * 28 17 16 46 46 H 1.08995 * 109.46950 * 299.99743 * 29 28 17 47 47 H 1.09002 * 109.46904 * 179.97438 * 29 28 17 48 48 H 1.08998 * 109.51316 * 50.75817 * 30 8 7 49 49 H 1.09001 * 109.50708 * 170.84689 * 30 8 7 50 50 H 1.09009 * 109.71736 * 44.32523 * 31 4 3 51 51 H 1.09003 * 109.71864 * 283.68081 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5361 0.7326 -0.0052 5 7 3.5897 -0.6132 -0.0098 6 7 2.2675 -1.0663 -0.0056 7 6 4.8197 -1.4051 -0.0184 8 6 5.9838 -0.5037 -0.4457 9 1 5.8797 -0.2518 -1.5010 10 6 7.2867 -1.2293 -0.2286 11 8 8.1213 -0.7663 0.5197 12 7 7.5245 -2.3926 -0.8663 13 6 8.7908 -3.0983 -0.6548 14 1 9.5934 -2.3728 -0.5224 15 6 8.6840 -3.9744 0.5950 16 6 10.0063 -4.7118 0.8154 17 6 10.3086 -5.5912 -0.3996 18 1 9.5057 -6.3165 -0.5319 19 7 11.5745 -6.2977 -0.1883 20 6 11.5923 -7.4780 0.5058 21 1 10.6731 -7.8883 0.8971 22 6 12.7917 -8.1476 0.7056 23 7 13.9118 -7.6479 0.2283 24 14 12.8159 -9.7580 1.6518 25 1 12.6279 -10.8894 0.7084 26 1 14.1202 -9.9044 2.3465 27 1 11.7189 -9.7606 2.6526 28 6 10.4154 -4.7151 -1.6494 29 6 9.0931 -3.9777 -1.8698 30 6 5.9693 0.7801 0.3893 31 6 4.7521 1.6266 -0.0054 32 1 -0.3634 -0.0054 1.0276 33 1 -0.3634 0.8927 -0.5092 34 1 -0.3633 -0.8873 -0.5185 35 1 5.0089 -1.7970 0.9810 36 1 4.7184 -2.2300 -0.7235 37 1 6.8569 -2.7630 -1.4646 38 1 8.4683 -3.3479 1.4604 39 1 7.8815 -4.6999 0.4625 40 1 9.9304 -5.3356 1.7060 41 1 10.8092 -3.9864 0.9477 42 1 12.4001 -5.9294 -0.5401 43 1 14.7500 -8.1156 0.3682 44 1 10.6312 -5.3416 -2.5149 45 1 11.2183 -3.9898 -1.5171 46 1 8.2903 -4.7030 -2.0021 47 1 9.1693 -3.3532 -2.7600 48 1 5.9079 0.5256 1.4474 49 1 6.8825 1.3456 0.2034 50 1 4.6157 2.4331 0.7151 51 1 4.9016 2.0438 -1.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034697255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:43 Heat of formation + Delta-G solvation = 15.495334 kcal Electronic energy + Delta-G solvation = -30293.248536 eV Core-core repulsion = 26227.366435 eV Total energy + Delta-G solvation = -4065.882101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.42979 -41.33425 -39.51210 -37.67063 -36.39023 -34.74456 -34.23375 -33.12117 -32.37245 -31.68247 -30.78187 -29.55042 -28.63033 -25.74772 -25.34470 -24.36319 -23.61168 -22.50637 -21.83832 -21.49620 -20.93290 -20.35187 -19.13977 -18.29863 -17.83238 -17.29898 -17.16312 -16.83767 -16.41801 -15.90915 -15.60488 -15.39634 -15.30631 -15.21786 -15.07599 -14.97943 -14.57053 -14.25161 -14.02084 -13.89480 -13.55423 -13.43700 -13.33552 -13.15146 -13.07995 -12.86182 -12.82757 -12.68800 -12.45515 -12.30111 -12.22831 -12.15606 -12.02642 -11.96609 -11.66543 -11.45647 -11.20852 -11.14477 -10.93594 -10.81847 -10.78733 -10.32485 -10.06065 -8.99122 -7.93949 -5.21682 0.53177 1.09735 1.46153 1.47393 1.55603 1.57905 1.79704 2.05142 2.56013 2.92364 3.11851 3.39031 3.41127 3.46983 3.71264 3.76080 3.81815 3.85394 3.90660 4.04718 4.18665 4.22209 4.30298 4.37801 4.38093 4.41578 4.52313 4.55205 4.60814 4.65906 4.72750 4.76455 4.86602 4.88800 4.92545 4.95017 5.01183 5.10414 5.12773 5.15506 5.26416 5.28945 5.30036 5.45629 5.46266 5.52657 5.56048 5.65159 5.75717 6.29071 6.50784 7.05697 7.19136 7.34543 8.12928 8.34584 9.29641 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.001807 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.788697 B =15495.120002 C =16115.305016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.205 3.795 3 N -0.566 5.566 4 C 0.276 3.724 5 N -0.381 5.381 6 N -0.345 5.345 7 C 0.137 3.863 8 C -0.110 4.110 9 H 0.140 0.860 10 C 0.527 3.473 11 O -0.566 6.566 12 N -0.708 5.708 13 C 0.153 3.847 14 H 0.069 0.931 15 C -0.112 4.112 16 C -0.123 4.123 17 C 0.171 3.829 18 H 0.046 0.954 19 N -0.739 5.739 20 C -0.236 4.236 21 H 0.074 0.926 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.969 3.031 25 H -0.286 1.286 26 H -0.298 1.298 27 H -0.271 1.271 28 C -0.114 4.114 29 C -0.106 4.106 30 C -0.105 4.105 31 C -0.034 4.034 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.417 0.583 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.066 0.934 49 H 0.105 0.895 50 H 0.119 0.881 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.317 19.982 -6.150 32.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 N -0.295 5.295 4 C 0.000 4.000 5 N -0.172 5.172 6 N -0.174 5.174 7 C 0.015 3.985 8 C -0.132 4.132 9 H 0.158 0.842 10 C 0.312 3.688 11 O -0.444 6.444 12 N -0.359 5.359 13 C 0.049 3.951 14 H 0.088 0.912 15 C -0.152 4.152 16 C -0.164 4.164 17 C 0.063 3.937 18 H 0.064 0.936 19 N -0.379 5.379 20 C -0.368 4.368 21 H 0.092 0.908 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.799 3.201 25 H -0.213 1.213 26 H -0.224 1.224 27 H -0.196 1.196 28 C -0.153 4.153 29 C -0.144 4.144 30 C -0.144 4.144 31 C -0.073 4.073 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.139 0.861 37 H 0.254 0.746 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.203 0.797 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.109 0.891 48 H 0.085 0.915 49 H 0.124 0.876 50 H 0.137 0.863 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -25.128 19.652 -5.530 32.376 hybrid contribution 0.932 -1.280 0.585 1.688 sum -24.196 18.372 -4.945 30.780 Atomic orbital electron populations 1.20234 0.81659 1.04985 1.04657 1.25150 0.99774 0.85213 0.97474 1.70211 1.00769 1.31461 1.27044 1.25015 0.95638 0.84316 0.95021 1.50217 1.05566 1.06227 1.55157 1.77897 0.87367 1.23442 1.28731 1.21861 0.77827 0.93964 1.04854 1.21671 0.90115 0.96134 1.05290 0.84246 1.20374 0.88206 0.80810 0.79392 1.90766 1.48475 1.67302 1.37897 1.45997 1.19900 1.22508 1.47530 1.20846 0.85904 0.93343 0.95038 0.91245 1.21765 0.97411 0.98265 0.97732 1.22024 0.96573 0.98196 0.99639 1.20510 0.87877 0.92213 0.93082 0.93602 1.42673 1.05374 1.24205 1.65604 1.19613 0.93359 0.98257 1.25556 0.90776 1.25525 0.95403 1.02684 1.03413 1.69810 0.98090 1.41559 1.52654 0.85199 0.76559 0.80055 0.78329 1.21327 1.22437 1.19642 1.21642 0.97961 0.98239 0.97439 1.21655 0.97341 0.98513 0.96923 1.21550 0.99054 0.94101 0.99673 1.20603 0.84568 0.95446 1.06700 0.88885 0.88547 0.89039 0.89380 0.86115 0.74592 0.93117 0.90651 0.94353 0.94188 0.79725 0.94161 0.91647 0.92794 0.89515 0.89117 0.91546 0.87641 0.86275 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.51 71.23 0.75 0.08 16 2 C 0.21 4.16 8.15 138.48 1.13 5.29 16 3 N -0.57 -11.89 11.18 -179.32 -2.01 -13.89 16 4 C 0.28 4.68 7.72 138.37 1.07 5.75 16 5 N -0.38 -6.71 4.04 -338.36 -1.37 -8.08 16 6 N -0.35 -7.59 12.74 -51.08 -0.65 -8.24 16 7 C 0.14 1.59 6.42 86.52 0.56 2.15 16 8 C -0.11 -1.05 2.54 -11.39 -0.03 -1.08 16 9 H 0.14 0.65 8.12 -2.39 -0.02 0.63 16 10 C 0.53 8.47 7.10 87.66 0.62 9.09 16 11 O -0.57 -14.52 15.50 -3.04 -0.05 -14.57 16 12 N -0.71 -9.63 4.98 -442.52 -2.20 -11.84 16 13 C 0.15 3.18 2.46 44.99 0.11 3.29 16 14 H 0.07 1.80 7.58 -2.39 -0.02 1.78 16 15 C -0.11 -2.89 5.49 30.60 0.17 -2.72 16 16 C -0.12 -4.32 5.50 30.59 0.17 -4.15 16 17 C 0.17 6.37 2.77 44.99 0.12 6.50 16 18 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 19 N -0.74 -36.82 5.12 -322.93 -1.65 -38.48 16 20 C -0.24 -13.03 9.93 84.03 0.83 -12.20 16 21 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 22 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 23 N -0.97 -59.62 13.06 21.65 0.28 -59.33 16 24 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 27 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 28 C -0.11 -3.29 5.39 30.59 0.16 -3.13 16 29 C -0.11 -2.00 5.39 30.59 0.16 -1.83 16 30 C -0.11 -1.08 4.68 30.79 0.14 -0.94 16 31 C -0.03 -0.30 6.33 30.06 0.19 -0.11 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.18 8.12 -2.39 -0.02 1.16 16 36 H 0.12 0.94 7.88 -2.39 -0.02 0.92 16 37 H 0.42 2.80 8.25 -92.71 -0.77 2.04 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.37 19.99 7.80 -92.70 -0.72 19.27 16 43 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 49 H 0.11 1.07 7.80 -2.39 -0.02 1.05 16 50 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 51 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -78.81 407.11 0.47 -78.34 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -0.55 Total: 25.78 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 6.63 Total: 1.95 kcal Atomic # 7 Polarization: -132.26 SS G_CDS: -7.60 Total: -139.86 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.05 Total: -14.57 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -78.81 0.47 -78.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034697255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.839 kcal (2) G-P(sol) polarization free energy of solvation -78.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds