Wall clock time and date at job start Wed Apr 1 2020 05:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30841 * 126.46628 * 2 1 4 4 N 1.28902 * 109.74499 * 179.97438 * 3 2 1 5 5 C 1.29841 * 109.47646 * 359.97268 * 4 3 2 6 6 N 1.34694 * 126.46749 * 179.97438 * 2 1 3 7 7 C 1.46257 * 128.84723 * 0.16699 * 6 2 1 8 8 C 1.53316 * 108.72971 * 162.86910 * 7 6 2 9 9 H 1.08999 * 109.43387 * 290.27896 * 8 7 6 10 10 C 1.50700 * 109.45307 * 170.33079 * 8 7 6 11 11 O 1.21283 * 119.99803 * 359.88740 * 10 8 7 12 12 N 1.34777 * 119.99675 * 180.16616 * 10 8 7 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 8 14 14 H 1.09007 * 109.47747 * 35.00142 * 13 12 10 15 15 C 1.53006 * 109.47036 * 154.99621 * 13 12 10 16 16 C 1.52998 * 109.47344 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46921 * 300.00334 * 16 15 13 18 18 H 1.08999 * 109.47539 * 299.99851 * 17 16 15 19 19 N 1.46505 * 109.46989 * 179.97438 * 17 16 15 20 20 C 1.36938 * 119.99921 * 154.99629 * 19 17 16 21 21 H 1.08006 * 120.00273 * 0.02562 * 20 19 17 22 22 C 1.38810 * 119.99959 * 180.02562 * 20 19 17 23 23 N 1.31623 * 120.00023 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00000 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46838 * 90.00507 * 24 22 20 26 26 H 1.48506 * 109.46994 * 210.00238 * 24 22 20 27 27 H 1.48497 * 109.47141 * 329.99969 * 24 22 20 28 28 C 1.52999 * 109.47579 * 59.99872 * 17 16 15 29 29 C 1.52998 * 109.47099 * 300.00018 * 28 17 16 30 30 C 1.53143 * 109.58018 * 50.29794 * 8 7 6 31 31 C 1.50803 * 128.51954 * 180.09692 * 5 4 3 32 32 H 1.08994 * 109.47057 * 270.02866 * 1 2 3 33 33 H 1.08999 * 109.46918 * 30.02885 * 1 2 3 34 34 H 1.08997 * 109.46766 * 150.02930 * 1 2 3 35 35 H 1.09006 * 109.59421 * 43.09796 * 7 6 2 36 36 H 1.09001 * 109.59536 * 282.64694 * 7 6 2 37 37 H 0.97000 * 119.99894 * 359.71837 * 12 10 8 38 38 H 1.09001 * 109.47081 * 299.99960 * 15 13 12 39 39 H 1.09002 * 109.47134 * 59.99771 * 15 13 12 40 40 H 1.09002 * 109.47122 * 59.99850 * 16 15 13 41 41 H 1.08998 * 109.47333 * 180.02562 * 16 15 13 42 42 H 0.96994 * 120.00008 * 334.99704 * 19 17 16 43 43 H 0.96995 * 120.00174 * 179.97438 * 23 22 20 44 44 H 1.09002 * 109.47185 * 60.00042 * 28 17 16 45 45 H 1.09001 * 109.47276 * 180.02562 * 28 17 16 46 46 H 1.09002 * 109.47122 * 300.00063 * 29 28 17 47 47 H 1.08998 * 109.47333 * 179.97438 * 29 28 17 48 48 H 1.09005 * 109.50034 * 50.51903 * 30 8 7 49 49 H 1.09004 * 109.50003 * 170.58682 * 30 8 7 50 50 H 1.08997 * 109.73067 * 44.45138 * 31 5 4 51 51 H 1.09006 * 109.73121 * 283.76544 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6814 0.0005 5 6 3.5816 -0.6155 0.0015 6 7 2.3076 -1.0832 0.0005 7 6 1.9368 -2.4980 -0.0022 8 6 3.1552 -3.3254 -0.4281 9 1 3.3622 -3.1493 -1.4836 10 6 2.8691 -4.7889 -0.2101 11 8 1.7991 -5.1367 0.2427 12 7 3.8045 -5.7107 -0.5130 13 6 3.5286 -7.1329 -0.2954 14 1 2.4764 -7.3340 -0.4971 15 6 4.3972 -7.9707 -1.2360 16 6 4.1096 -9.4560 -1.0084 17 6 4.4302 -9.8211 0.4424 18 1 5.4823 -9.6197 0.6438 19 7 4.1541 -11.2433 0.6605 20 6 4.8061 -11.9226 1.6548 21 1 5.5235 -11.4099 2.2785 22 6 4.5450 -13.2702 1.8612 23 7 5.1713 -13.9231 2.8172 24 14 3.3037 -14.1568 0.7830 25 1 3.9949 -14.7271 -0.4012 26 1 2.6666 -15.2511 1.5588 27 1 2.2630 -13.1972 0.3344 28 6 3.5616 -8.9834 1.3830 29 6 3.8492 -7.4980 1.1554 30 6 4.3720 -2.9139 0.4058 31 6 4.8052 -1.4969 0.0044 32 1 -0.3633 0.0005 1.0276 33 1 -0.3633 0.8897 -0.5143 34 1 -0.3633 -0.8902 -0.5134 35 1 1.1204 -2.6606 -0.7060 36 1 1.6243 -2.7959 0.9987 37 1 4.6603 -5.4325 -0.8751 38 1 4.1691 -7.7103 -2.2696 39 1 5.4494 -7.7697 -1.0345 40 1 3.0574 -9.6574 -1.2097 41 1 4.7287 -10.0529 -1.6782 42 1 3.5096 -11.7036 0.1007 43 1 4.9886 -14.8646 2.9617 44 1 2.5094 -9.1848 1.1818 45 1 3.7903 -9.2432 2.4166 46 1 4.9014 -7.2967 1.3567 47 1 3.2301 -6.9012 1.8252 48 1 4.1101 -2.9295 1.4638 49 1 5.1906 -3.6102 0.2233 50 1 5.5305 -1.1172 0.7240 51 1 5.2485 -1.5145 -0.9913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034796730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:57 Heat of formation + Delta-G solvation = 33.697477 kcal Electronic energy + Delta-G solvation = -30527.681999 eV Core-core repulsion = 26462.589202 eV Total energy + Delta-G solvation = -4065.092797 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.71115 -40.65250 -38.53031 -37.14249 -35.23121 -34.57384 -33.24472 -32.05043 -31.12225 -30.79402 -30.59633 -27.96332 -27.77502 -25.44327 -23.84608 -23.26689 -22.59583 -21.85032 -21.20042 -20.80491 -20.05782 -19.67826 -18.04417 -17.51563 -17.08683 -16.68954 -16.45791 -15.76434 -15.34384 -15.22003 -14.69929 -14.62141 -14.49129 -14.22409 -14.15981 -13.93172 -13.60652 -13.50049 -13.10751 -13.03403 -12.76753 -12.74765 -12.68997 -12.30692 -12.09862 -11.95020 -11.86453 -11.81357 -11.63290 -11.27437 -10.99661 -10.94262 -10.77523 -10.67980 -10.52918 -10.34547 -10.30449 -10.07037 -9.92626 -9.61596 -9.34528 -9.23419 -8.93874 -7.30722 -5.80570 -3.16251 1.41376 1.93858 2.14951 2.49742 2.75842 3.34330 3.37071 3.42545 3.53049 3.74943 3.89098 3.94750 4.05563 4.38089 4.45752 4.53038 4.55649 4.62384 4.71410 4.73833 4.82692 4.94569 4.99266 5.00217 5.07072 5.13540 5.25955 5.35972 5.37485 5.39748 5.41644 5.43873 5.51756 5.57123 5.64179 5.67702 5.80296 5.81447 5.97600 6.04267 6.07694 6.24063 6.32932 6.38840 6.44391 6.53149 6.80726 6.96597 7.11040 7.79271 7.95548 8.38422 8.38611 9.17129 9.89829 10.09406 11.37731 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.001823 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.165436 B =15354.319493 C =15623.619529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.180 3.820 3 N -0.300 5.300 4 N -0.290 5.290 5 C 0.171 3.829 6 N -0.469 5.469 7 C 0.124 3.876 8 C -0.124 4.124 9 H 0.111 0.889 10 C 0.524 3.476 11 O -0.534 6.534 12 N -0.718 5.718 13 C 0.144 3.856 14 H 0.089 0.911 15 C -0.119 4.119 16 C -0.124 4.124 17 C 0.182 3.818 18 H 0.055 0.945 19 N -0.749 5.749 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.133 4.133 29 C -0.123 4.123 30 C -0.119 4.119 31 C -0.031 4.031 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.400 0.600 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.106 0.894 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 25.849 -10.319 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 N -0.141 5.141 4 N -0.129 5.129 5 C -0.097 4.097 6 N -0.161 5.161 7 C 0.001 3.999 8 C -0.146 4.146 9 H 0.129 0.871 10 C 0.308 3.692 11 O -0.410 6.410 12 N -0.369 5.369 13 C 0.041 3.959 14 H 0.107 0.893 15 C -0.157 4.157 16 C -0.163 4.163 17 C 0.072 3.928 18 H 0.073 0.927 19 N -0.391 5.391 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.582 5.582 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.174 4.174 29 C -0.163 4.163 30 C -0.157 4.157 31 C -0.070 4.070 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.234 0.766 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.100 0.900 49 H 0.113 0.887 50 H 0.125 0.875 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.661 26.937 -9.798 29.040 hybrid contribution -0.931 -2.000 -0.812 2.350 sum -5.592 24.937 -10.610 27.671 Atomic orbital electron populations 1.20239 0.83593 1.04606 1.04269 1.24703 0.97162 0.82674 1.04170 1.74499 0.96098 1.23650 1.19845 1.74051 1.12339 1.08024 1.18486 1.24710 0.87040 0.92628 1.05292 1.45997 1.07012 1.08449 1.54632 1.21765 0.97542 0.75295 1.05348 1.21639 0.96457 0.93074 1.03405 0.87082 1.19982 0.84397 0.86864 0.77933 1.90766 1.24342 1.81784 1.44105 1.46118 1.18020 1.07269 1.65447 1.21187 1.00967 0.77771 0.96024 0.89340 1.21739 0.99821 0.95761 0.98393 1.21797 1.01821 0.93865 0.98853 1.20215 0.97277 0.84404 0.90882 0.92658 1.42790 1.50234 1.05727 1.40370 1.19066 1.17825 0.92286 1.08114 0.89235 1.24683 0.99594 0.96531 0.98405 1.69699 1.45383 1.09528 1.33549 0.86553 0.81878 0.79660 0.80441 1.21121 1.21783 1.20335 1.22199 1.00864 0.92174 1.02150 1.21889 1.01361 0.98084 0.94917 1.21769 0.96702 0.96524 1.00742 1.20234 0.91258 0.90843 1.04695 0.89412 0.88590 0.90307 0.87888 0.87793 0.76603 0.91762 0.91243 0.92083 0.91168 0.80694 0.93065 0.92607 0.91239 0.91996 0.92246 0.89967 0.88742 0.87535 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.29 36.01 0.37 0.01 16 2 C 0.18 1.70 8.07 -155.45 -1.25 0.45 16 3 N -0.30 -3.83 12.23 32.70 0.40 -3.43 16 4 N -0.29 -3.66 12.21 32.76 0.40 -3.27 16 5 C 0.17 1.57 7.75 -155.30 -1.20 0.37 16 6 N -0.47 -3.90 3.11 -110.86 -0.35 -4.25 16 7 C 0.12 0.79 5.48 -4.01 -0.02 0.77 16 8 C -0.12 -0.65 2.54 -91.53 -0.23 -0.88 16 9 H 0.11 0.42 8.12 -51.93 -0.42 0.00 16 10 C 0.52 4.27 7.12 -10.98 -0.08 4.19 16 11 O -0.53 -6.56 15.49 5.55 0.09 -6.47 16 12 N -0.72 -5.16 4.90 -53.80 -0.26 -5.43 16 13 C 0.14 1.48 2.45 -67.93 -0.17 1.31 16 14 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 15 C -0.12 -1.14 5.39 -26.73 -0.14 -1.29 16 16 C -0.12 -1.67 5.39 -26.73 -0.14 -1.81 16 17 C 0.18 3.15 2.77 -67.93 -0.19 2.96 16 18 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 19 N -0.75 -16.84 4.92 -53.42 -0.26 -17.10 16 20 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 21 H 0.09 2.62 8.06 -52.48 -0.42 2.19 16 22 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 23 N -0.93 -28.86 13.97 55.49 0.78 -28.09 16 24 Si 0.88 21.70 27.74 -169.99 -4.71 16.98 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 28 C -0.13 -2.15 5.50 -26.73 -0.15 -2.30 16 29 C -0.12 -1.52 5.49 -26.73 -0.15 -1.67 16 30 C -0.12 -0.49 5.23 -26.39 -0.14 -0.63 16 31 C -0.03 -0.15 6.34 -27.57 -0.17 -0.33 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.29 7.75 -51.93 -0.40 -0.11 16 35 H 0.10 0.57 7.85 -51.93 -0.41 0.16 16 36 H 0.10 0.74 7.79 -51.93 -0.40 0.34 16 37 H 0.40 1.68 7.93 -40.82 -0.32 1.36 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.36 8.02 5.66 -40.82 -0.23 7.79 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.08 0.44 8.12 -51.93 -0.42 0.01 16 49 H 0.09 0.22 7.31 -51.93 -0.38 -0.16 16 50 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 401.28 15.07 6.05 6.05 Total: -1.00 -36.45 401.28 -10.27 -46.72 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.47 Total: 3.90 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -3.92 Total: -5.62 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.70 Total: -61.56 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: 0.09 Total: -6.47 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.45 -10.27 -46.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034796730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.413 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds