Wall clock time and date at job start Wed Apr 1 2020 05:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30841 * 126.46628 * 2 1 4 4 N 1.28902 * 109.74499 * 179.97438 * 3 2 1 5 5 C 1.29841 * 109.47646 * 359.97268 * 4 3 2 6 6 N 1.34694 * 126.46749 * 179.97438 * 2 1 3 7 7 C 1.46257 * 128.84723 * 0.16699 * 6 2 1 8 8 C 1.53316 * 108.72971 * 162.86910 * 7 6 2 9 9 H 1.08999 * 109.43387 * 290.27896 * 8 7 6 10 10 C 1.50700 * 109.45307 * 170.33079 * 8 7 6 11 11 O 1.21283 * 119.99803 * 359.88740 * 10 8 7 12 12 N 1.34777 * 119.99675 * 180.16616 * 10 8 7 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 8 14 14 H 1.09007 * 109.47747 * 35.00142 * 13 12 10 15 15 C 1.53006 * 109.47036 * 154.99621 * 13 12 10 16 16 C 1.52998 * 109.47344 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46921 * 300.00334 * 16 15 13 18 18 H 1.08999 * 109.47539 * 299.99851 * 17 16 15 19 19 N 1.46505 * 109.46989 * 179.97438 * 17 16 15 20 20 C 1.36938 * 119.99921 * 154.99629 * 19 17 16 21 21 H 1.08006 * 120.00273 * 0.02562 * 20 19 17 22 22 C 1.38810 * 119.99959 * 180.02562 * 20 19 17 23 23 N 1.31623 * 120.00023 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00000 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.46838 * 90.00507 * 24 22 20 26 26 H 1.48506 * 109.46994 * 210.00238 * 24 22 20 27 27 H 1.48497 * 109.47141 * 329.99969 * 24 22 20 28 28 C 1.52999 * 109.47579 * 59.99872 * 17 16 15 29 29 C 1.52998 * 109.47099 * 300.00018 * 28 17 16 30 30 C 1.53143 * 109.58018 * 50.29794 * 8 7 6 31 31 C 1.50803 * 128.51954 * 180.09692 * 5 4 3 32 32 H 1.08994 * 109.47057 * 270.02866 * 1 2 3 33 33 H 1.08999 * 109.46918 * 30.02885 * 1 2 3 34 34 H 1.08997 * 109.46766 * 150.02930 * 1 2 3 35 35 H 1.09006 * 109.59421 * 43.09796 * 7 6 2 36 36 H 1.09001 * 109.59536 * 282.64694 * 7 6 2 37 37 H 0.97000 * 119.99894 * 359.71837 * 12 10 8 38 38 H 1.09001 * 109.47081 * 299.99960 * 15 13 12 39 39 H 1.09002 * 109.47134 * 59.99771 * 15 13 12 40 40 H 1.09002 * 109.47122 * 59.99850 * 16 15 13 41 41 H 1.08998 * 109.47333 * 180.02562 * 16 15 13 42 42 H 0.96994 * 120.00008 * 334.99704 * 19 17 16 43 43 H 0.96995 * 120.00174 * 179.97438 * 23 22 20 44 44 H 1.09002 * 109.47185 * 60.00042 * 28 17 16 45 45 H 1.09001 * 109.47276 * 180.02562 * 28 17 16 46 46 H 1.09002 * 109.47122 * 300.00063 * 29 28 17 47 47 H 1.08998 * 109.47333 * 179.97438 * 29 28 17 48 48 H 1.09005 * 109.50034 * 50.51903 * 30 8 7 49 49 H 1.09004 * 109.50003 * 170.58682 * 30 8 7 50 50 H 1.08997 * 109.73067 * 44.45138 * 31 5 4 51 51 H 1.09006 * 109.73121 * 283.76544 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6814 0.0005 5 6 3.5816 -0.6155 0.0015 6 7 2.3076 -1.0832 0.0005 7 6 1.9368 -2.4980 -0.0022 8 6 3.1552 -3.3254 -0.4281 9 1 3.3622 -3.1493 -1.4836 10 6 2.8691 -4.7889 -0.2101 11 8 1.7991 -5.1367 0.2427 12 7 3.8045 -5.7107 -0.5130 13 6 3.5286 -7.1329 -0.2954 14 1 2.4764 -7.3340 -0.4971 15 6 4.3972 -7.9707 -1.2360 16 6 4.1096 -9.4560 -1.0084 17 6 4.4302 -9.8211 0.4424 18 1 5.4823 -9.6197 0.6438 19 7 4.1541 -11.2433 0.6605 20 6 4.8061 -11.9226 1.6548 21 1 5.5235 -11.4099 2.2785 22 6 4.5450 -13.2702 1.8612 23 7 5.1713 -13.9231 2.8172 24 14 3.3037 -14.1568 0.7830 25 1 3.9949 -14.7271 -0.4012 26 1 2.6666 -15.2511 1.5588 27 1 2.2630 -13.1972 0.3344 28 6 3.5616 -8.9834 1.3830 29 6 3.8492 -7.4980 1.1554 30 6 4.3720 -2.9139 0.4058 31 6 4.8052 -1.4969 0.0044 32 1 -0.3633 0.0005 1.0276 33 1 -0.3633 0.8897 -0.5143 34 1 -0.3633 -0.8902 -0.5134 35 1 1.1204 -2.6606 -0.7060 36 1 1.6243 -2.7959 0.9987 37 1 4.6603 -5.4325 -0.8751 38 1 4.1691 -7.7103 -2.2696 39 1 5.4494 -7.7697 -1.0345 40 1 3.0574 -9.6574 -1.2097 41 1 4.7287 -10.0529 -1.6782 42 1 3.5096 -11.7036 0.1007 43 1 4.9886 -14.8646 2.9617 44 1 2.5094 -9.1848 1.1818 45 1 3.7903 -9.2432 2.4166 46 1 4.9014 -7.2967 1.3567 47 1 3.2301 -6.9012 1.8252 48 1 4.1101 -2.9295 1.4638 49 1 5.1906 -3.6102 0.2233 50 1 5.5305 -1.1172 0.7240 51 1 5.2485 -1.5145 -0.9913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034796730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:55 Heat of formation + Delta-G solvation = 9.141861 kcal Electronic energy + Delta-G solvation = -30528.746810 eV Core-core repulsion = 26462.589202 eV Total energy + Delta-G solvation = -4066.157608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.38004 -41.35807 -39.56257 -37.81409 -36.47701 -35.22442 -34.60487 -33.08105 -32.39600 -31.67526 -31.41758 -29.25248 -28.35032 -26.19231 -25.04033 -24.24734 -23.65256 -22.61032 -22.25287 -21.56069 -21.09927 -20.46725 -19.54734 -18.53613 -17.71507 -17.41741 -17.14228 -16.78273 -16.37260 -16.18396 -15.85976 -15.34585 -15.19541 -15.03748 -15.02938 -14.83839 -14.74120 -14.47853 -14.33730 -13.97566 -13.63680 -13.49058 -13.36742 -13.21053 -13.19093 -13.08157 -12.90254 -12.63252 -12.40094 -12.30567 -12.20855 -12.06540 -12.02670 -11.97659 -11.78525 -11.44862 -11.37977 -11.20200 -11.14939 -10.92335 -10.81445 -10.04237 -10.03122 -9.28132 -8.00930 -5.33425 0.78376 1.35246 1.38042 1.41291 1.48536 1.53221 1.76251 2.13171 2.49466 3.05998 3.25661 3.30139 3.37471 3.53762 3.55655 3.63946 3.78415 3.88970 3.93127 4.01860 4.13312 4.23848 4.27858 4.31962 4.35701 4.38544 4.54744 4.56142 4.61543 4.61667 4.64515 4.66101 4.82998 4.83765 4.88336 4.95930 4.97298 5.01074 5.05511 5.14340 5.17811 5.22203 5.26689 5.29429 5.48998 5.53723 5.63146 5.80211 5.87147 6.23988 6.54232 7.10526 7.22366 7.66461 7.88398 8.05958 9.20695 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.001823 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.165436 B =15354.319493 C =15623.619529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.178 3.822 3 N -0.348 5.348 4 N -0.338 5.338 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.122 3.878 8 C -0.111 4.111 9 H 0.137 0.863 10 C 0.527 3.473 11 O -0.577 6.577 12 N -0.703 5.703 13 C 0.153 3.847 14 H 0.070 0.930 15 C -0.107 4.107 16 C -0.118 4.118 17 C 0.173 3.827 18 H 0.047 0.953 19 N -0.754 5.754 20 C -0.224 4.224 21 H 0.056 0.944 22 C -0.069 4.069 23 N -0.986 5.986 24 Si 0.955 3.045 25 H -0.276 1.276 26 H -0.300 1.300 27 H -0.253 1.253 28 C -0.126 4.126 29 C -0.113 4.113 30 C -0.113 4.113 31 C -0.027 4.027 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.420 0.580 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.364 0.636 43 H 0.256 0.744 44 H 0.046 0.954 45 H 0.034 0.966 46 H 0.074 0.926 47 H 0.050 0.950 48 H 0.069 0.931 49 H 0.123 0.877 50 H 0.113 0.887 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 26.716 -13.258 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.188 5.188 4 N -0.176 5.176 5 C -0.095 4.095 6 N -0.160 5.160 7 C 0.000 4.000 8 C -0.133 4.133 9 H 0.155 0.845 10 C 0.313 3.687 11 O -0.456 6.456 12 N -0.355 5.355 13 C 0.049 3.951 14 H 0.089 0.911 15 C -0.145 4.145 16 C -0.157 4.157 17 C 0.066 3.934 18 H 0.065 0.935 19 N -0.397 5.397 20 C -0.355 4.355 21 H 0.074 0.926 22 C -0.260 4.260 23 N -0.637 5.637 24 Si 0.782 3.218 25 H -0.202 1.202 26 H -0.227 1.227 27 H -0.178 1.178 28 C -0.167 4.167 29 C -0.152 4.152 30 C -0.151 4.151 31 C -0.067 4.067 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.258 0.742 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.197 0.803 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.093 0.907 47 H 0.068 0.932 48 H 0.087 0.913 49 H 0.141 0.859 50 H 0.132 0.868 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.802 27.885 -12.786 31.050 hybrid contribution -0.851 -2.199 0.189 2.366 sum -5.653 25.686 -12.597 29.162 Atomic orbital electron populations 1.20417 0.81129 1.05827 1.05228 1.25362 0.98567 0.82428 1.02659 1.74391 0.96769 1.25579 1.22051 1.73940 1.12756 1.10112 1.20817 1.25473 0.88532 0.92260 1.03252 1.46118 1.06690 1.08896 1.54291 1.21864 0.98636 0.74338 1.05207 1.21574 0.96202 0.90437 1.05077 0.84504 1.20388 0.83643 0.87916 0.76746 1.90765 1.26273 1.82580 1.46012 1.45859 1.18856 1.05746 1.64998 1.20859 1.00213 0.79710 0.94364 0.91133 1.21663 1.00634 0.92516 0.99732 1.21704 1.01912 0.96791 0.95265 1.20511 0.96981 0.81758 0.94160 0.93458 1.42864 1.49851 1.07786 1.39175 1.19035 1.16344 0.92287 1.07883 0.92575 1.25514 1.02425 0.97668 1.00387 1.69887 1.47935 1.09696 1.36161 0.85410 0.79700 0.78246 0.78407 1.20227 1.22740 1.17807 1.22017 0.99965 0.94996 0.99702 1.21762 1.01913 0.94765 0.96760 1.21777 0.97007 0.96592 0.99723 1.20461 0.89639 0.90196 1.06371 0.88475 0.88066 0.88349 0.86876 0.88813 0.74241 0.88834 0.89439 0.92040 0.90871 0.80315 0.93520 0.93477 0.94755 0.90707 0.93163 0.91266 0.85904 0.86845 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.29 71.24 0.73 0.09 16 2 C 0.18 3.27 8.07 138.14 1.11 4.39 16 3 N -0.35 -9.02 12.23 -50.46 -0.62 -9.64 16 4 N -0.34 -8.56 12.21 -50.28 -0.61 -9.18 16 5 C 0.17 2.95 7.75 138.14 1.07 4.02 16 6 N -0.47 -7.14 3.11 -504.65 -1.57 -8.71 16 7 C 0.12 1.30 5.48 86.53 0.47 1.78 16 8 C -0.11 -0.77 2.54 -11.39 -0.03 -0.80 16 9 H 0.14 0.34 8.12 -2.39 -0.02 0.32 16 10 C 0.53 6.90 7.12 87.66 0.62 7.53 16 11 O -0.58 -13.11 15.49 -3.04 -0.05 -13.15 16 12 N -0.70 -7.15 4.90 -442.52 -2.17 -9.31 16 13 C 0.15 2.64 2.45 44.99 0.11 2.75 16 14 H 0.07 1.55 7.58 -2.38 -0.02 1.54 16 15 C -0.11 -1.59 5.39 30.60 0.16 -1.42 16 16 C -0.12 -2.81 5.39 30.59 0.16 -2.64 16 17 C 0.17 5.84 2.77 44.99 0.12 5.97 16 18 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 19 N -0.75 -33.54 4.92 -322.93 -1.59 -35.13 16 20 C -0.22 -12.48 10.41 84.03 0.87 -11.60 16 21 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 22 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 23 N -0.99 -62.88 13.97 21.65 0.30 -62.58 16 24 Si 0.95 44.98 27.74 68.60 1.90 46.89 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 27 H -0.25 -10.78 6.52 99.48 0.65 -10.13 16 28 C -0.13 -4.05 5.50 30.59 0.17 -3.89 16 29 C -0.11 -2.59 5.49 30.59 0.17 -2.42 16 30 C -0.11 -0.53 5.23 30.81 0.16 -0.37 16 31 C -0.03 -0.19 6.34 30.05 0.19 0.00 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 0.53 7.75 -2.39 -0.02 0.51 16 35 H 0.11 0.99 7.85 -2.38 -0.02 0.97 16 36 H 0.09 1.23 7.79 -2.39 -0.02 1.21 16 37 H 0.42 1.16 7.93 -92.71 -0.74 0.42 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 42 H 0.36 15.60 5.66 -92.71 -0.52 15.08 16 43 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.07 0.56 8.12 -2.38 -0.02 0.54 16 49 H 0.12 -0.07 7.31 -2.39 -0.02 -0.09 16 50 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16 Total: -1.00 -84.90 401.28 1.81 -83.09 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -0.37 Total: 17.89 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 6.58 Total: -0.16 kcal Atomic # 7 Polarization: -128.30 SS G_CDS: -6.26 Total: -134.55 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.05 Total: -13.15 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.90 Total: 46.89 kcal Total: -84.90 1.81 -83.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034796730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.232 kcal (2) G-P(sol) polarization free energy of solvation -84.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds