Wall clock time and date at job start Wed Apr 1 2020 05:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36591 * 126.58139 * 2 1 4 4 C 1.47528 * 125.77341 * 0.03277 * 3 2 1 5 5 O 1.21595 * 119.99055 * 6.24981 * 4 3 2 6 6 N 1.34768 * 120.00391 * 186.25463 * 4 3 2 7 7 C 1.46594 * 119.68681 * 176.55530 * 6 4 3 8 8 C 1.53947 * 110.57998 * 227.80072 * 7 6 4 9 9 C 1.51526 * 107.34592 * 308.94376 * 8 7 6 10 10 H 1.08999 * 109.27781 * 306.29808 * 9 8 7 11 11 C 1.55365 * 107.78809 * 64.85747 * 9 8 7 12 12 H 1.08994 * 111.51488 * 50.61744 * 11 9 8 13 13 C 1.53740 * 100.21934 * 168.51690 * 11 9 8 14 14 C 1.55294 * 101.87645 * 320.88571 * 13 11 9 15 15 N 1.45468 * 116.86960 * 181.60415 * 9 8 7 16 16 C 1.36941 * 126.40128 * 30.88205 * 15 9 8 17 17 H 1.07999 * 120.00203 * 354.72735 * 16 15 9 18 18 C 1.38817 * 119.99338 * 174.72841 * 16 15 9 19 19 N 1.31613 * 120.00501 * 5.11278 * 18 16 15 20 20 Si 1.86802 * 119.99601 * 185.11020 * 18 16 15 21 21 H 1.48497 * 109.47209 * 94.99993 * 20 18 16 22 22 H 1.48505 * 109.47279 * 215.00200 * 20 18 16 23 23 H 1.48509 * 109.47088 * 334.99859 * 20 18 16 24 24 C 1.48922 * 119.82097 * 356.21134 * 6 4 3 25 25 N 1.34402 * 108.46054 * 179.76764 * 3 2 1 26 26 N 1.28761 * 109.52421 * 0.22898 * 25 3 2 27 27 N 1.34818 * 126.58126 * 180.15930 * 2 1 3 28 28 C 1.46501 * 126.59236 * 359.96886 * 27 2 1 29 29 C 1.53001 * 109.46967 * 120.27543 * 28 27 2 30 30 C 1.52998 * 109.47373 * 240.27354 * 28 27 2 31 31 H 1.09006 * 109.47215 * 90.02872 * 1 2 3 32 32 H 1.08995 * 109.47504 * 210.02548 * 1 2 3 33 33 H 1.08995 * 109.46961 * 330.02930 * 1 2 3 34 34 H 1.08996 * 109.25629 * 107.51553 * 7 6 4 35 35 H 1.09003 * 109.25467 * 348.07937 * 7 6 4 36 36 H 1.08994 * 109.88749 * 189.48346 * 8 7 6 37 37 H 1.09003 * 109.94705 * 68.43561 * 8 7 6 38 38 H 1.09002 * 110.95909 * 79.03795 * 13 11 9 39 39 H 1.09003 * 110.95514 * 202.73076 * 13 11 9 40 40 H 1.08997 * 109.92221 * 141.84403 * 14 13 11 41 41 H 1.09001 * 109.92078 * 263.15451 * 14 13 11 42 42 H 0.97001 * 120.00400 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.91546 * 8.97812 * 24 6 4 44 44 H 1.09006 * 110.80581 * 247.01440 * 24 6 4 45 45 H 1.08997 * 109.47569 * 0.27652 * 28 27 2 46 46 H 1.09002 * 109.47169 * 60.00061 * 29 28 27 47 47 H 1.08999 * 109.47276 * 180.02562 * 29 28 27 48 48 H 1.09006 * 109.47450 * 300.00189 * 29 28 27 49 49 H 1.09002 * 109.47177 * 300.00192 * 30 28 27 50 50 H 1.08995 * 109.47052 * 60.00179 * 30 28 27 51 51 H 1.08999 * 109.47173 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8738 2.5027 0.0007 5 8 0.6920 2.7645 0.1160 6 7 2.7750 3.4966 -0.1265 7 6 2.3167 4.8871 -0.2012 8 6 3.0013 5.6206 -1.3687 9 6 4.4929 5.3896 -1.2349 10 1 4.8145 5.6843 -0.2360 11 6 4.7573 3.8710 -1.4295 12 1 4.2821 3.4954 -2.3356 13 6 6.2889 3.8757 -1.5627 14 6 6.5323 5.1555 -2.4079 15 7 5.3484 6.0285 -2.2228 16 6 5.1054 7.2146 -2.8628 17 1 4.1664 7.7266 -2.7129 18 6 6.0662 7.7587 -3.7041 19 7 7.1677 7.0877 -3.9661 20 14 5.7956 9.4433 -4.4646 21 1 6.4548 10.4766 -3.6262 22 1 6.3774 9.4691 -5.8306 23 1 4.3392 9.7235 -4.5415 24 6 4.2282 3.1760 -0.1826 25 7 3.5983 0.6788 0.0052 26 7 3.6299 -0.6084 0.0035 27 7 2.3104 -1.0826 -0.0030 28 6 1.8863 -2.4849 -0.0063 29 6 2.4343 -3.1805 -1.2540 30 6 2.4239 -3.1832 1.2444 31 1 -0.3634 -0.0005 -1.0277 32 1 -0.3634 -0.8897 0.5142 33 1 -0.3633 0.8902 0.5134 34 1 2.5566 5.3953 0.7328 35 1 1.2371 4.9022 -0.3509 36 1 2.7852 6.6875 -1.3140 37 1 2.6478 5.2192 -2.3185 38 1 6.7650 3.9575 -0.5856 39 1 6.6370 2.9878 -2.0907 40 1 7.4293 5.6664 -2.0583 41 1 6.6382 4.8912 -3.4601 42 1 7.8392 7.4681 -4.5537 43 1 4.3676 2.0983 -0.2674 44 1 4.7422 3.5524 0.7020 45 1 0.7975 -2.5353 -0.0109 46 1 3.5231 -3.1302 -1.2494 47 1 2.1184 -4.2237 -1.2567 48 1 2.0514 -2.6830 -2.1451 49 1 3.5127 -3.1329 1.2490 50 1 2.0335 -2.6877 2.1333 51 1 2.1087 -4.2267 1.2417 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036855879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:24 Heat of formation + Delta-G solvation = 101.830166 kcal Electronic energy + Delta-G solvation = -31875.949063 eV Core-core repulsion = 27813.810722 eV Total energy + Delta-G solvation = -4062.138342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.50610 -39.84471 -38.12628 -36.78052 -35.17382 -33.23675 -32.48184 -32.13109 -30.82791 -29.47162 -28.16517 -27.89068 -27.73016 -25.01443 -24.33334 -23.77132 -22.75456 -21.60287 -20.60431 -20.01146 -19.68213 -18.97026 -17.46716 -16.60196 -16.40324 -16.26932 -15.74323 -15.04955 -14.90171 -14.88719 -14.59955 -14.18430 -13.83984 -13.78936 -13.57280 -13.49794 -13.34584 -13.03158 -12.95606 -12.81561 -12.78646 -12.51959 -12.28929 -12.06808 -12.02898 -11.85904 -11.53305 -11.43835 -11.31842 -10.87092 -10.75660 -10.53710 -10.47939 -10.37415 -10.07732 -10.04896 -9.79468 -9.75061 -9.53147 -9.25779 -9.07984 -8.54637 -8.36297 -6.74530 -5.65722 -2.97504 0.97425 1.64722 1.75877 3.11077 3.34801 3.44161 3.49274 3.51075 3.85623 3.98063 4.23706 4.32248 4.34691 4.52255 4.55808 4.79481 4.95960 4.97275 5.12035 5.14519 5.16363 5.19790 5.27151 5.39621 5.44621 5.49211 5.55249 5.57126 5.62897 5.66934 5.71328 5.75879 5.93201 6.00297 6.04659 6.23341 6.25972 6.34829 6.36763 6.45536 6.60181 6.63834 6.75081 6.77878 7.01986 7.20280 7.52903 7.64720 7.69612 7.86808 7.88205 8.28631 8.31644 9.26516 9.90359 10.59718 11.47432 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019750 B = 0.002606 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.359717 B =10740.686953 C =11532.836121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.120 3.880 3 C -0.096 4.096 4 C 0.600 3.400 5 O -0.551 6.551 6 N -0.589 5.589 7 C 0.117 3.883 8 C -0.128 4.128 9 C 0.165 3.835 10 H 0.021 0.979 11 C -0.120 4.120 12 H 0.076 0.924 13 C -0.135 4.135 14 C 0.178 3.822 15 N -0.596 5.596 16 C -0.223 4.223 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.083 3.917 25 N -0.200 5.200 26 N -0.066 5.066 27 N -0.356 5.356 28 C 0.144 3.856 29 C -0.163 4.163 30 C -0.163 4.163 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.040 0.960 41 H 0.049 0.951 42 H 0.251 0.749 43 H 0.142 0.858 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.064 0.936 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.688 -22.653 10.194 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.017 4.017 3 C -0.235 4.235 4 C 0.386 3.614 5 O -0.430 6.430 6 N -0.320 5.320 7 C -0.006 4.006 8 C -0.167 4.167 9 C 0.057 3.943 10 H 0.038 0.962 11 C -0.140 4.140 12 H 0.094 0.906 13 C -0.173 4.173 14 C 0.054 3.946 15 N -0.320 5.320 16 C -0.351 4.351 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.219 1.219 23 H -0.207 1.207 24 C -0.039 4.039 25 N -0.071 5.071 26 N -0.044 5.044 27 N -0.143 5.143 28 C 0.042 3.958 29 C -0.221 4.221 30 C -0.221 4.221 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.158 0.842 44 H 0.086 0.914 45 H 0.127 0.873 46 H 0.094 0.906 47 H 0.101 0.899 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.083 0.917 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.699 -22.782 10.093 27.527 hybrid contribution -0.845 1.151 -0.549 1.530 sum -12.544 -21.631 9.544 26.765 Atomic orbital electron populations 1.20733 0.84862 1.05372 1.04596 1.21866 0.96165 0.86272 0.97439 1.21223 0.88867 0.95435 1.17933 1.16807 0.85232 0.82590 0.76770 1.90709 1.16325 1.83382 1.52559 1.48414 1.07583 1.06153 1.69822 1.21667 1.00008 0.79974 0.98934 1.21889 0.97122 1.00215 0.97465 1.20691 0.89978 0.90548 0.93107 0.96216 1.22577 0.96782 0.97584 0.97090 0.90573 1.22693 0.94110 1.00051 1.00490 1.21531 0.89685 0.86274 0.97154 1.44255 1.19931 1.21916 1.45924 1.19022 1.00219 0.95376 1.20495 0.90403 1.24793 0.96666 0.98623 1.00449 1.69954 1.09570 1.36973 1.40378 0.86152 0.77341 0.84276 0.78343 1.21718 1.21875 1.20689 1.23138 0.77513 1.05440 0.97854 1.74178 1.18470 1.03434 1.11055 1.81967 0.96408 1.03802 1.22218 1.50619 1.06305 1.07166 1.50229 1.21646 1.00424 0.75348 0.98348 1.22162 1.03335 1.00816 0.95793 1.22165 1.03368 1.00817 0.95746 0.89166 0.90876 0.86709 0.91869 0.89423 0.90614 0.91599 0.92337 0.92156 0.94177 0.93274 0.93859 0.84203 0.91373 0.87335 0.90562 0.89937 0.91644 0.90593 0.91734 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 9.48 36.00 0.34 -0.42 16 2 C 0.12 1.32 7.02 -81.88 -0.57 0.75 16 3 C -0.10 -1.36 6.76 -83.55 -0.57 -1.92 16 4 C 0.60 9.56 7.67 -12.48 -0.10 9.47 16 5 O -0.55 -9.25 14.04 5.28 0.07 -9.18 16 6 N -0.59 -9.60 3.01 -172.72 -0.52 -10.12 16 7 C 0.12 1.88 6.31 -3.50 -0.02 1.86 16 8 C -0.13 -2.39 5.43 -26.98 -0.15 -2.54 16 9 C 0.17 3.48 2.57 -67.98 -0.17 3.31 16 10 H 0.02 0.44 7.93 -51.93 -0.41 0.03 16 11 C -0.12 -2.26 2.84 -89.37 -0.25 -2.52 16 12 H 0.08 1.55 8.12 -51.93 -0.42 1.13 16 13 C -0.13 -2.62 6.53 -25.13 -0.16 -2.78 16 14 C 0.18 4.42 5.44 -1.86 -0.01 4.41 16 15 N -0.60 -15.38 3.35 -163.01 -0.55 -15.92 16 16 C -0.22 -6.24 9.88 -15.06 -0.15 -6.39 16 17 H 0.08 2.10 7.15 -52.49 -0.38 1.72 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -27.52 10.47 55.49 0.58 -26.94 16 20 Si 0.91 22.47 29.56 -169.99 -5.02 17.45 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.08 1.35 5.87 -3.09 -0.02 1.33 16 25 N -0.20 -2.92 8.56 32.85 0.28 -2.64 16 26 N -0.07 -0.85 13.67 60.35 0.82 -0.03 16 27 N -0.36 -3.51 3.28 -50.41 -0.17 -3.68 16 28 C 0.14 0.81 3.68 -67.93 -0.25 0.56 16 29 C -0.16 -0.83 9.47 37.16 0.35 -0.48 16 30 C -0.16 -0.77 9.47 37.16 0.35 -0.42 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.34 7.19 -51.93 -0.37 -0.03 16 33 H 0.11 1.10 6.32 -51.93 -0.33 0.77 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 1.38 6.98 -51.93 -0.36 1.02 16 36 H 0.08 1.42 7.59 -51.93 -0.39 1.03 16 37 H 0.07 1.31 8.12 -51.93 -0.42 0.88 16 38 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.04 1.09 7.65 -51.93 -0.40 0.69 16 41 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.14 2.24 3.63 -136.58 -0.50 1.75 16 44 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 45 H 0.11 0.36 6.79 -51.93 -0.35 0.00 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 51 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 LS Contribution 393.80 15.07 5.93 5.93 Total: -1.00 -33.60 393.80 -8.53 -42.13 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -8.50 Total: -0.87 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.47 Total: 3.87 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.45 Total: -59.34 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.07 Total: -9.18 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.60 -8.53 -42.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036855879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.965 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds