Wall clock time and date at job start Wed Apr 1 2020 05:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36591 * 126.58139 * 2 1 4 4 C 1.47528 * 125.77341 * 0.03277 * 3 2 1 5 5 O 1.21595 * 119.99055 * 6.24981 * 4 3 2 6 6 N 1.34768 * 120.00391 * 186.25463 * 4 3 2 7 7 C 1.46594 * 119.68681 * 176.55530 * 6 4 3 8 8 C 1.53947 * 110.57998 * 227.80072 * 7 6 4 9 9 C 1.51526 * 107.34592 * 308.94376 * 8 7 6 10 10 H 1.08999 * 109.27781 * 306.29808 * 9 8 7 11 11 C 1.55365 * 107.78809 * 64.85747 * 9 8 7 12 12 H 1.08994 * 111.51488 * 50.61744 * 11 9 8 13 13 C 1.53740 * 100.21934 * 168.51690 * 11 9 8 14 14 C 1.55294 * 101.87645 * 320.88571 * 13 11 9 15 15 N 1.45468 * 116.86960 * 181.60415 * 9 8 7 16 16 C 1.36941 * 126.40128 * 30.88205 * 15 9 8 17 17 H 1.07999 * 120.00203 * 354.72735 * 16 15 9 18 18 C 1.38817 * 119.99338 * 174.72841 * 16 15 9 19 19 N 1.31613 * 120.00501 * 5.11278 * 18 16 15 20 20 Si 1.86802 * 119.99601 * 185.11020 * 18 16 15 21 21 H 1.48497 * 109.47209 * 94.99993 * 20 18 16 22 22 H 1.48505 * 109.47279 * 215.00200 * 20 18 16 23 23 H 1.48509 * 109.47088 * 334.99859 * 20 18 16 24 24 C 1.48922 * 119.82097 * 356.21134 * 6 4 3 25 25 N 1.34402 * 108.46054 * 179.76764 * 3 2 1 26 26 N 1.28761 * 109.52421 * 0.22898 * 25 3 2 27 27 N 1.34818 * 126.58126 * 180.15930 * 2 1 3 28 28 C 1.46501 * 126.59236 * 359.96886 * 27 2 1 29 29 C 1.53001 * 109.46967 * 120.27543 * 28 27 2 30 30 C 1.52998 * 109.47373 * 240.27354 * 28 27 2 31 31 H 1.09006 * 109.47215 * 90.02872 * 1 2 3 32 32 H 1.08995 * 109.47504 * 210.02548 * 1 2 3 33 33 H 1.08995 * 109.46961 * 330.02930 * 1 2 3 34 34 H 1.08996 * 109.25629 * 107.51553 * 7 6 4 35 35 H 1.09003 * 109.25467 * 348.07937 * 7 6 4 36 36 H 1.08994 * 109.88749 * 189.48346 * 8 7 6 37 37 H 1.09003 * 109.94705 * 68.43561 * 8 7 6 38 38 H 1.09002 * 110.95909 * 79.03795 * 13 11 9 39 39 H 1.09003 * 110.95514 * 202.73076 * 13 11 9 40 40 H 1.08997 * 109.92221 * 141.84403 * 14 13 11 41 41 H 1.09001 * 109.92078 * 263.15451 * 14 13 11 42 42 H 0.97001 * 120.00400 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.91546 * 8.97812 * 24 6 4 44 44 H 1.09006 * 110.80581 * 247.01440 * 24 6 4 45 45 H 1.08997 * 109.47569 * 0.27652 * 28 27 2 46 46 H 1.09002 * 109.47169 * 60.00061 * 29 28 27 47 47 H 1.08999 * 109.47276 * 180.02562 * 29 28 27 48 48 H 1.09006 * 109.47450 * 300.00189 * 29 28 27 49 49 H 1.09002 * 109.47177 * 300.00192 * 30 28 27 50 50 H 1.08995 * 109.47052 * 60.00179 * 30 28 27 51 51 H 1.08999 * 109.47173 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8738 2.5027 0.0007 5 8 0.6920 2.7645 0.1160 6 7 2.7750 3.4966 -0.1265 7 6 2.3167 4.8871 -0.2012 8 6 3.0013 5.6206 -1.3687 9 6 4.4929 5.3896 -1.2349 10 1 4.8145 5.6843 -0.2360 11 6 4.7573 3.8710 -1.4295 12 1 4.2821 3.4954 -2.3356 13 6 6.2889 3.8757 -1.5627 14 6 6.5323 5.1555 -2.4079 15 7 5.3484 6.0285 -2.2228 16 6 5.1054 7.2146 -2.8628 17 1 4.1664 7.7266 -2.7129 18 6 6.0662 7.7587 -3.7041 19 7 7.1677 7.0877 -3.9661 20 14 5.7956 9.4433 -4.4646 21 1 6.4548 10.4766 -3.6262 22 1 6.3774 9.4691 -5.8306 23 1 4.3392 9.7235 -4.5415 24 6 4.2282 3.1760 -0.1826 25 7 3.5983 0.6788 0.0052 26 7 3.6299 -0.6084 0.0035 27 7 2.3104 -1.0826 -0.0030 28 6 1.8863 -2.4849 -0.0063 29 6 2.4343 -3.1805 -1.2540 30 6 2.4239 -3.1832 1.2444 31 1 -0.3634 -0.0005 -1.0277 32 1 -0.3634 -0.8897 0.5142 33 1 -0.3633 0.8902 0.5134 34 1 2.5566 5.3953 0.7328 35 1 1.2371 4.9022 -0.3509 36 1 2.7852 6.6875 -1.3140 37 1 2.6478 5.2192 -2.3185 38 1 6.7650 3.9575 -0.5856 39 1 6.6370 2.9878 -2.0907 40 1 7.4293 5.6664 -2.0583 41 1 6.6382 4.8912 -3.4601 42 1 7.8392 7.4681 -4.5537 43 1 4.3676 2.0983 -0.2674 44 1 4.7422 3.5524 0.7020 45 1 0.7975 -2.5353 -0.0109 46 1 3.5231 -3.1302 -1.2494 47 1 2.1184 -4.2237 -1.2567 48 1 2.0514 -2.6830 -2.1451 49 1 3.5127 -3.1329 1.2490 50 1 2.0335 -2.6877 2.1333 51 1 2.1087 -4.2267 1.2417 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036855879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:23 Heat of formation + Delta-G solvation = 80.723764 kcal Electronic energy + Delta-G solvation = -31876.864305 eV Core-core repulsion = 27813.810722 eV Total energy + Delta-G solvation = -4063.053584 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.41320 -41.21731 -39.62416 -37.42022 -36.69376 -34.42964 -33.98043 -33.51567 -31.90354 -31.20631 -29.60522 -28.78598 -28.25436 -26.74918 -25.50572 -24.89764 -24.19999 -22.86202 -21.83715 -21.38206 -21.13161 -20.25964 -18.56267 -18.24056 -17.34364 -17.21031 -17.18206 -16.78913 -16.21340 -16.01300 -15.69709 -15.44009 -15.31025 -14.96338 -14.73859 -14.49584 -14.29361 -14.13837 -13.97413 -13.95150 -13.73496 -13.50375 -13.22059 -13.21661 -13.17135 -13.07369 -12.77656 -12.68996 -12.60311 -12.51236 -12.11970 -12.06647 -12.00699 -11.81595 -11.72122 -11.57337 -11.44606 -11.17273 -11.13838 -10.70336 -10.51877 -10.22523 -9.65766 -8.85355 -7.83570 -5.17236 0.13181 0.58190 1.05852 1.45195 1.47149 1.55689 1.90246 2.19921 2.50833 3.05733 3.26862 3.35321 3.48639 3.51590 3.67172 3.83173 3.87113 3.95041 4.00430 4.06519 4.12696 4.21024 4.23523 4.37564 4.47635 4.50872 4.62252 4.64332 4.65772 4.68093 4.73530 4.76430 4.77683 4.84263 4.86833 4.92250 5.05311 5.09310 5.12130 5.18508 5.20741 5.22499 5.35117 5.49209 5.55311 5.57315 5.66759 5.70115 5.77468 6.21428 6.28545 6.85395 7.10241 7.11080 7.80177 8.49890 9.28988 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019750 B = 0.002606 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.359717 B =10740.686953 C =11532.836121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.133 3.867 3 C -0.128 4.128 4 C 0.600 3.400 5 O -0.562 6.562 6 N -0.597 5.597 7 C 0.126 3.874 8 C -0.118 4.118 9 C 0.156 3.844 10 H 0.022 0.978 11 C -0.104 4.104 12 H 0.058 0.942 13 C -0.119 4.119 14 C 0.184 3.816 15 N -0.616 5.616 16 C -0.231 4.231 17 H 0.085 0.915 18 C -0.070 4.070 19 N -0.953 5.953 20 Si 0.975 3.025 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.267 1.267 24 C 0.094 3.906 25 N -0.222 5.222 26 N -0.083 5.083 27 N -0.342 5.342 28 C 0.132 3.868 29 C -0.161 4.161 30 C -0.160 4.160 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.008 0.992 41 H 0.012 0.988 42 H 0.245 0.755 43 H 0.151 0.849 44 H 0.077 0.923 45 H 0.144 0.856 46 H 0.056 0.944 47 H 0.113 0.887 48 H 0.056 0.944 49 H 0.056 0.944 50 H 0.060 0.940 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.162 -24.883 11.482 31.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.006 4.006 3 C -0.267 4.267 4 C 0.387 3.613 5 O -0.442 6.442 6 N -0.327 5.327 7 C 0.003 3.997 8 C -0.157 4.157 9 C 0.049 3.951 10 H 0.039 0.961 11 C -0.125 4.125 12 H 0.077 0.923 13 C -0.158 4.158 14 C 0.059 3.941 15 N -0.341 5.341 16 C -0.360 4.360 17 H 0.102 0.898 18 C -0.263 4.263 19 N -0.602 5.602 20 Si 0.803 3.197 21 H -0.215 1.215 22 H -0.224 1.224 23 H -0.192 1.192 24 C -0.028 4.028 25 N -0.094 5.094 26 N -0.061 5.061 27 N -0.130 5.130 28 C 0.033 3.967 29 C -0.218 4.218 30 C -0.217 4.217 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.026 0.974 41 H 0.031 0.969 42 H 0.054 0.946 43 H 0.167 0.833 44 H 0.096 0.904 45 H 0.161 0.839 46 H 0.075 0.925 47 H 0.131 0.869 48 H 0.075 0.925 49 H 0.075 0.925 50 H 0.079 0.921 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.200 -25.052 11.410 30.975 hybrid contribution -0.145 1.704 -0.934 1.949 sum -14.346 -23.349 10.476 29.338 Atomic orbital electron populations 1.20860 0.82355 1.06470 1.05646 1.22306 0.97447 0.85607 0.95239 1.21188 0.89615 0.95326 1.20601 1.17024 0.84952 0.83216 0.76062 1.90695 1.16640 1.83807 1.53055 1.48433 1.07602 1.06315 1.70392 1.21555 0.99910 0.80002 0.98189 1.21771 0.95519 1.00452 0.98000 1.20904 0.90844 0.91632 0.91740 0.96088 1.22418 0.96056 0.96140 0.97839 0.92332 1.22563 0.94908 0.97767 1.00573 1.21304 0.88655 0.88228 0.95892 1.44547 1.21067 1.21883 1.46567 1.19412 1.00316 0.96184 1.20042 0.89768 1.25641 0.96730 1.02267 1.01629 1.70174 1.10413 1.38410 1.41249 0.85105 0.77823 0.79815 0.76913 1.21508 1.22365 1.19169 1.23064 0.77588 1.05734 0.96424 1.74008 1.19081 1.04306 1.11983 1.81870 0.98296 1.03185 1.22789 1.50959 1.05081 1.08523 1.48409 1.22213 1.02478 0.73041 0.98987 1.22172 1.02037 1.02527 0.95106 1.22170 1.02110 1.02469 0.94979 0.87920 0.86967 0.88391 0.90400 0.88814 0.90859 0.93199 0.90383 0.90387 0.97424 0.96940 0.94555 0.83331 0.90444 0.83883 0.92517 0.86869 0.92479 0.92490 0.92100 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 9.48 71.23 0.68 -0.50 16 2 C 0.13 2.64 7.02 41.71 0.29 2.93 16 3 C -0.13 -3.49 6.76 40.82 0.28 -3.22 16 4 C 0.60 18.52 7.67 86.69 0.66 19.18 16 5 O -0.56 -18.19 14.04 -4.01 -0.06 -18.25 16 6 N -0.60 -18.90 3.01 -818.62 -2.47 -21.37 16 7 C 0.13 3.93 6.31 86.68 0.55 4.48 16 8 C -0.12 -4.42 5.43 30.43 0.17 -4.26 16 9 C 0.16 6.62 2.57 45.52 0.12 6.74 16 10 H 0.02 0.92 7.93 -2.39 -0.02 0.91 16 11 C -0.10 -3.93 2.84 -9.98 -0.03 -3.96 16 12 H 0.06 2.42 8.12 -2.39 -0.02 2.40 16 13 C -0.12 -4.67 6.53 31.63 0.21 -4.46 16 14 C 0.18 9.54 5.44 86.83 0.47 10.01 16 15 N -0.62 -32.72 3.35 -669.64 -2.24 -34.96 16 16 C -0.23 -13.19 9.88 84.03 0.83 -12.36 16 17 H 0.08 4.59 7.15 -2.91 -0.02 4.56 16 18 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 19 N -0.95 -59.28 10.47 21.65 0.23 -59.05 16 20 Si 0.97 47.16 29.56 68.60 2.03 49.18 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C 0.09 2.99 5.87 85.66 0.50 3.49 16 25 N -0.22 -6.34 8.56 -49.99 -0.43 -6.76 16 26 N -0.08 -2.08 13.67 37.02 0.51 -1.57 16 27 N -0.34 -6.01 3.28 -313.40 -1.03 -7.04 16 28 C 0.13 1.04 3.68 44.99 0.17 1.21 16 29 C -0.16 -1.21 9.47 71.98 0.68 -0.53 16 30 C -0.16 -1.03 9.47 71.98 0.68 -0.35 16 31 H 0.10 1.07 8.14 -2.38 -0.02 1.06 16 32 H 0.11 0.49 7.19 -2.39 -0.02 0.47 16 33 H 0.10 1.65 6.32 -2.39 -0.02 1.64 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.09 2.84 6.98 -2.39 -0.02 2.82 16 36 H 0.07 2.74 7.59 -2.39 -0.02 2.73 16 37 H 0.05 2.00 8.12 -2.39 -0.02 1.98 16 38 H 0.08 2.76 8.12 -2.39 -0.02 2.74 16 39 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.01 0.43 7.65 -2.39 -0.02 0.41 16 41 H 0.01 0.72 7.38 -2.39 -0.02 0.70 16 42 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.15 4.65 3.63 -111.92 -0.41 4.25 16 44 H 0.08 2.32 8.08 -2.38 -0.02 2.30 16 45 H 0.14 0.20 6.79 -2.39 -0.02 0.18 16 46 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 48 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 49 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 Total: -1.00 -76.52 393.80 3.79 -72.73 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.53 Total: 12.31 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 6.72 Total: 14.77 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -5.44 Total: -130.75 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.06 Total: -18.25 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -76.52 3.79 -72.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036855879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.454 kcal (2) G-P(sol) polarization free energy of solvation -76.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds