Wall clock time and date at job start Wed Apr 1 2020 05:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36599 * 126.57906 * 2 1 4 4 C 1.47524 * 125.77272 * 0.02562 * 3 2 1 5 5 O 1.21595 * 119.99604 * 0.24024 * 4 3 2 6 6 N 1.34775 * 120.00276 * 180.23441 * 4 3 2 7 7 C 1.44218 * 115.75989 * 359.75352 * 6 4 3 8 8 C 1.51807 * 112.78273 * 185.98647 * 7 6 4 9 9 C 1.50992 * 111.99722 * 324.62415 * 8 7 6 10 10 H 1.09001 * 108.31974 * 180.08351 * 9 8 7 11 11 C 1.53982 * 111.97704 * 59.89274 * 9 8 7 12 12 H 1.08999 * 112.96809 * 75.43850 * 11 9 8 13 13 C 1.56268 * 99.75547 * 195.21414 * 11 9 8 14 14 C 1.54653 * 102.20674 * 38.87520 * 13 11 9 15 15 N 1.46667 * 113.21546 * 301.07235 * 9 8 7 16 16 C 1.36933 * 126.19617 * 330.15813 * 15 9 8 17 17 H 1.08002 * 120.00639 * 354.49633 * 16 15 9 18 18 C 1.38816 * 119.99998 * 174.50406 * 16 15 9 19 19 N 1.31625 * 119.99373 * 7.00548 * 18 16 15 20 20 Si 1.86796 * 120.00331 * 187.00600 * 18 16 15 21 21 H 1.48495 * 109.47172 * 94.98320 * 20 18 16 22 22 H 1.48504 * 109.47219 * 214.98770 * 20 18 16 23 23 H 1.48500 * 109.46910 * 334.98562 * 20 18 16 24 24 C 1.43524 * 115.76370 * 180.02562 * 6 4 3 25 25 N 1.34396 * 108.45933 * 180.23512 * 3 2 1 26 26 N 1.28769 * 109.52351 * 359.77684 * 25 3 2 27 27 N 1.34813 * 126.58168 * 179.85103 * 2 1 3 28 28 C 1.46496 * 126.59345 * 0.03134 * 27 2 1 29 29 C 1.52999 * 109.46930 * 119.71121 * 28 27 2 30 30 C 1.52993 * 109.47314 * 239.71260 * 28 27 2 31 31 H 1.08999 * 109.47224 * 270.15468 * 1 2 3 32 32 H 1.09008 * 109.47276 * 30.15073 * 1 2 3 33 33 H 1.08998 * 109.47205 * 150.14800 * 1 2 3 34 34 H 1.08998 * 108.82791 * 307.04465 * 7 6 4 35 35 H 1.08998 * 108.83017 * 65.35546 * 7 6 4 36 36 H 1.08995 * 109.09453 * 203.87189 * 8 7 6 37 37 H 1.08991 * 108.78845 * 85.17186 * 8 7 6 38 38 H 1.08999 * 110.85502 * 157.05337 * 13 11 9 39 39 H 1.09002 * 110.85621 * 280.69813 * 13 11 9 40 40 H 1.09005 * 109.96266 * 95.28600 * 14 13 11 41 41 H 1.08988 * 109.96778 * 216.50840 * 14 13 11 42 42 H 0.97009 * 119.99408 * 180.02562 * 19 18 16 43 43 H 1.09003 * 108.16668 * 302.27554 * 24 6 4 44 44 H 1.09007 * 108.16693 * 58.86241 * 24 6 4 45 45 H 1.09006 * 109.47260 * 359.71948 * 28 27 2 46 46 H 1.09003 * 109.47170 * 60.00530 * 29 28 27 47 47 H 1.09006 * 109.47040 * 179.97438 * 29 28 27 48 48 H 1.09000 * 109.47722 * 300.00400 * 29 28 27 49 49 H 1.09005 * 109.46995 * 60.00156 * 30 28 27 50 50 H 1.09006 * 109.47005 * 179.97438 * 30 28 27 51 51 H 1.08993 * 109.47667 * 300.00263 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 0.0005 5 8 0.6860 2.7628 0.0054 6 7 2.7817 3.4988 -0.0043 7 6 4.1638 3.0871 -0.0042 8 6 5.1248 4.2539 0.1362 9 6 4.6230 5.4884 -0.5736 10 1 5.3552 6.2841 -0.4362 11 6 3.2641 5.9579 -0.0222 12 1 3.3462 6.4554 0.9442 13 6 2.8370 6.9334 -1.1658 14 6 3.3160 6.1838 -2.4309 15 7 4.4066 5.2820 -2.0095 16 6 5.0917 4.4106 -2.8135 17 1 5.9332 3.8600 -2.4195 18 6 4.7050 4.2352 -4.1351 19 7 3.7712 5.0036 -4.6550 20 14 5.5096 2.9089 -5.1756 21 1 4.6780 1.6791 -5.1396 22 1 5.6299 3.3843 -6.5773 23 1 6.8605 2.6088 -4.6370 24 6 2.2467 4.8306 -0.0027 25 7 3.5983 0.6790 -0.0052 26 7 3.6299 -0.6083 -0.0038 27 7 2.3104 -1.0826 0.0028 28 6 1.8864 -2.4848 0.0058 29 6 2.4237 -3.1827 -1.2452 30 6 2.4346 -3.1807 1.2532 31 1 -0.3633 0.0028 1.0276 32 1 -0.3634 0.8887 -0.5162 33 1 -0.3633 -0.8913 -0.5115 34 1 4.3244 2.3942 0.8218 35 1 4.3772 2.5707 -0.9401 36 1 6.0911 3.9722 -0.2820 37 1 5.2503 4.4798 1.1950 38 1 1.7551 7.0655 -1.1793 39 1 3.3450 7.8928 -1.0675 40 1 2.4953 5.6036 -2.8528 41 1 3.6854 6.8964 -3.1682 42 1 3.5007 4.8808 -5.5784 43 1 1.6028 4.9392 -0.8755 44 1 1.6271 4.9469 0.8865 45 1 0.7975 -2.5352 0.0105 46 1 3.5126 -3.1325 -1.2500 47 1 2.1086 -4.2262 -1.2428 48 1 2.0333 -2.6869 -2.1340 49 1 2.0517 -2.6835 2.1445 50 1 2.1187 -4.2240 1.2556 51 1 3.5233 -3.1304 1.2485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036855881.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:34 Heat of formation + Delta-G solvation = 103.189259 kcal Electronic energy + Delta-G solvation = -33025.818549 eV Core-core repulsion = 28963.739142 eV Total energy + Delta-G solvation = -4062.079407 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.19623 -39.99689 -37.99452 -36.52959 -34.97850 -32.95556 -32.84213 -31.71051 -30.97572 -29.38109 -28.08248 -27.71540 -27.31750 -25.08844 -24.03779 -23.99265 -22.51841 -22.16543 -20.26486 -19.99339 -19.46895 -17.83339 -17.24118 -16.44220 -16.22440 -16.07361 -15.60039 -15.52209 -14.75310 -14.61245 -14.22318 -14.18395 -13.91368 -13.57928 -13.49228 -13.24414 -13.10498 -13.04153 -12.77455 -12.63382 -12.52552 -12.35388 -12.00858 -11.88303 -11.86212 -11.60803 -11.35807 -11.28193 -11.14317 -10.87261 -10.80537 -10.61745 -10.50349 -10.09623 -10.06487 -9.80790 -9.72963 -9.61322 -9.56723 -9.36453 -8.94166 -8.49144 -7.84100 -6.73025 -5.64357 -2.94251 1.25501 2.02059 2.04246 3.44874 3.51287 3.51556 3.52120 3.68214 4.07707 4.28111 4.42987 4.53740 4.56632 4.65267 4.83256 5.03464 5.11899 5.19898 5.22045 5.30159 5.32104 5.35432 5.39972 5.43109 5.57134 5.62963 5.66138 5.73246 5.74896 5.79779 5.86487 5.91432 6.00028 6.12764 6.15963 6.20003 6.39112 6.44259 6.52919 6.53309 6.62466 6.70966 6.79087 6.91770 7.03499 7.33542 7.62758 7.71010 7.85642 7.90157 8.17248 8.32536 8.64605 9.28801 9.91452 10.59547 11.48638 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.004312 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.153305 B = 6492.126845 C = 7825.544547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.116 3.884 3 C -0.094 4.094 4 C 0.586 3.414 5 O -0.552 6.552 6 N -0.556 5.556 7 C 0.131 3.869 8 C -0.124 4.124 9 C 0.170 3.830 10 H 0.024 0.976 11 C -0.113 4.113 12 H 0.081 0.919 13 C -0.142 4.142 14 C 0.176 3.824 15 N -0.590 5.590 16 C -0.216 4.216 17 H 0.078 0.922 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 0.900 3.100 21 H -0.292 1.292 22 H -0.293 1.293 23 H -0.280 1.280 24 C 0.145 3.855 25 N -0.193 5.193 26 N -0.075 5.075 27 N -0.360 5.360 28 C 0.145 3.855 29 C -0.164 4.164 30 C -0.161 4.161 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.039 0.961 42 H 0.250 0.750 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.107 0.893 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.080 0.920 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.303 -12.600 13.026 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.021 4.021 3 C -0.233 4.233 4 C 0.372 3.628 5 O -0.431 6.431 6 N -0.285 5.285 7 C 0.008 3.992 8 C -0.163 4.163 9 C 0.062 3.938 10 H 0.041 0.959 11 C -0.133 4.133 12 H 0.100 0.900 13 C -0.181 4.181 14 C 0.052 3.948 15 N -0.316 5.316 16 C -0.344 4.344 17 H 0.096 0.904 18 C -0.201 4.201 19 N -0.566 5.566 20 Si 0.732 3.268 21 H -0.220 1.220 22 H -0.219 1.219 23 H -0.206 1.206 24 C 0.022 3.978 25 N -0.065 5.065 26 N -0.053 5.053 27 N -0.147 5.147 28 C 0.043 3.957 29 C -0.222 4.222 30 C -0.219 4.219 31 H 0.106 0.894 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.125 0.875 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.099 0.901 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.355 -12.893 12.770 18.920 hybrid contribution -0.457 -0.630 -0.812 1.125 sum -5.812 -13.523 11.958 18.964 Atomic orbital electron populations 1.20674 0.85069 1.05190 1.04224 1.21834 0.96051 0.86436 0.97804 1.21211 0.88930 0.95493 1.17635 1.16880 0.85527 0.82837 0.77524 1.90692 1.15995 1.83720 1.52699 1.46166 1.07002 1.05520 1.69763 1.20987 0.79179 0.96041 1.02948 1.21266 0.99562 0.96203 0.99308 1.20238 0.92949 0.94327 0.86262 0.95904 1.22445 0.96920 0.95707 0.98210 0.90038 1.23326 0.99894 0.97744 0.97108 1.21304 0.91121 0.91580 0.90821 1.44349 1.40368 1.45407 1.01475 1.18923 1.08735 1.15316 0.91461 0.90429 1.24733 0.98938 0.99325 0.97090 1.69966 1.33414 1.39563 1.13629 0.86258 0.78671 0.81991 0.79927 1.21980 1.21924 1.20567 1.20320 0.95214 0.80768 1.01459 1.75003 1.18753 1.03297 1.09492 1.81930 0.96204 1.04035 1.23169 1.50585 1.06500 1.06937 1.50700 1.21572 1.00281 0.75682 0.98138 1.22167 1.03397 1.00636 0.95986 1.22137 1.03233 1.00646 0.95843 0.89396 0.86897 0.91110 0.91361 0.90056 0.90623 0.92783 0.91955 0.92282 0.93382 0.94258 0.93984 0.91355 0.93216 0.87534 0.90626 0.90122 0.91635 0.91827 0.90135 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.40 36.01 0.34 -0.67 16 2 C 0.12 1.68 7.02 -81.87 -0.57 1.10 16 3 C -0.09 -1.68 6.61 -83.55 -0.55 -2.23 16 4 C 0.59 11.58 7.52 -12.48 -0.09 11.49 16 5 O -0.55 -11.26 14.30 5.28 0.08 -11.18 16 6 N -0.56 -11.02 3.19 -180.44 -0.58 -11.60 16 7 C 0.13 2.55 4.22 -5.86 -0.02 2.52 16 8 C -0.12 -2.29 5.11 -28.35 -0.14 -2.44 16 9 C 0.17 3.47 2.93 -68.34 -0.20 3.27 16 10 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 11 C -0.11 -2.02 3.80 -88.93 -0.34 -2.36 16 12 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 13 C -0.14 -2.67 6.14 -24.11 -0.15 -2.82 16 14 C 0.18 4.29 4.83 -2.54 -0.01 4.28 16 15 N -0.59 -14.70 3.05 -164.16 -0.50 -15.20 16 16 C -0.22 -5.93 8.81 -15.06 -0.13 -6.06 16 17 H 0.08 2.08 6.98 -52.49 -0.37 1.71 16 18 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 19 N -0.92 -27.38 10.45 55.49 0.58 -26.80 16 20 Si 0.90 22.89 29.56 -169.99 -5.02 17.86 16 21 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.15 2.76 4.61 -6.19 -0.03 2.73 16 25 N -0.19 -3.53 8.30 32.85 0.27 -3.26 16 26 N -0.07 -1.22 13.67 60.35 0.82 -0.39 16 27 N -0.36 -4.70 3.28 -50.41 -0.17 -4.86 16 28 C 0.14 1.21 3.68 -67.94 -0.25 0.96 16 29 C -0.16 -1.30 9.47 37.16 0.35 -0.95 16 30 C -0.16 -1.10 9.47 37.15 0.35 -0.75 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.11 1.49 6.44 -51.92 -0.33 1.16 16 33 H 0.07 0.55 7.19 -51.93 -0.37 0.18 16 34 H 0.07 1.24 6.34 -51.93 -0.33 0.91 16 35 H 0.08 1.84 6.64 -51.93 -0.34 1.50 16 36 H 0.08 1.43 7.37 -51.93 -0.38 1.04 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.08 7.81 -51.93 -0.41 0.67 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 1.33 7.03 -51.93 -0.37 0.96 16 41 H 0.04 1.06 7.70 -51.94 -0.40 0.66 16 42 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.07 1.47 6.57 -51.93 -0.34 1.13 16 44 H 0.05 0.87 8.04 -51.93 -0.42 0.45 16 45 H 0.11 0.63 6.79 -51.93 -0.35 0.28 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 51 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -33.58 388.98 -8.40 -41.99 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -8.20 Total: -0.26 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -1.55 Total: 7.84 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.44 Total: -62.11 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.58 -8.40 -41.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036855881.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.177 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds