Wall clock time and date at job start Wed Apr 1 2020 05:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30829 * 125.95994 * 2 1 4 4 C 1.33245 * 109.82813 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.52631 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46859 * 89.99585 * 5 4 3 7 7 O 1.21281 * 120.00230 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99619 * 179.97438 * 6 5 4 9 9 C 1.46927 * 120.63221 * 359.72353 * 8 6 5 10 10 C 1.52760 * 109.00637 * 233.58540 * 9 8 6 11 11 C 1.53044 * 109.38106 * 305.58431 * 10 9 8 12 12 C 1.53007 * 109.45989 * 181.26331 * 11 10 9 13 13 H 1.09007 * 110.88435 * 300.63689 * 12 11 10 14 14 C 1.55155 * 111.00406 * 176.75409 * 12 11 10 15 15 C 1.54371 * 102.91919 * 206.45194 * 14 12 11 16 16 N 1.47029 * 107.28919 * 22.13708 * 15 14 12 17 17 C 1.36932 * 125.64715 * 181.12340 * 16 15 14 18 18 H 1.08000 * 119.99755 * 179.97438 * 17 16 15 19 19 C 1.38804 * 120.00206 * 359.96515 * 17 16 15 20 20 N 1.31624 * 120.00334 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 120.00224 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46816 * 59.99678 * 21 19 17 23 23 H 1.48500 * 109.47320 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46627 * 299.99964 * 21 19 17 25 25 C 1.47420 * 108.70053 * 1.09563 * 16 15 14 26 26 C 1.53039 * 109.53620 * 61.24470 * 11 10 9 27 27 C 1.46932 * 120.62911 * 180.02562 * 8 6 5 28 28 N 1.30711 * 108.94469 * 359.97438 * 4 3 2 29 29 N 1.34425 * 125.96317 * 179.68611 * 2 1 3 30 30 H 0.97008 * 126.82165 * 0.02562 * 29 2 1 31 31 H 1.09002 * 109.47152 * 90.02815 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.02916 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.02897 * 1 2 3 34 34 H 1.08997 * 109.46853 * 209.99587 * 5 4 3 35 35 H 1.09004 * 109.47220 * 329.99785 * 5 4 3 36 36 H 1.08998 * 109.58563 * 353.41293 * 9 8 6 37 37 H 1.08999 * 109.58584 * 113.84067 * 9 8 6 38 38 H 1.08998 * 109.56618 * 185.55404 * 10 9 8 39 39 H 1.08999 * 109.38977 * 65.51345 * 10 9 8 40 40 H 1.09002 * 109.45168 * 301.22605 * 11 10 9 41 41 H 1.09003 * 110.72162 * 324.78724 * 14 12 11 42 42 H 1.08998 * 110.71722 * 88.06302 * 14 12 11 43 43 H 1.08997 * 109.84795 * 262.73172 * 15 14 12 44 44 H 1.09001 * 110.03114 * 141.64422 * 15 14 12 45 45 H 0.97001 * 120.00171 * 180.02562 * 20 19 17 46 46 H 1.09008 * 110.36642 * 217.03277 * 25 16 15 47 47 H 1.08993 * 110.46665 * 94.75652 * 25 16 15 48 48 H 1.09010 * 109.49416 * 178.68114 * 26 11 10 49 49 H 1.09001 * 109.52656 * 58.60444 * 26 11 10 50 50 H 1.08999 * 109.58613 * 246.15449 * 27 8 6 51 51 H 1.08996 * 109.58654 * 6.44151 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 -0.0006 5 6 4.7373 1.6236 -0.0002 6 6 5.1315 1.9343 1.4208 7 8 4.5138 1.4444 2.3424 8 7 6.1712 2.7558 1.6673 9 6 6.9335 3.3511 0.5614 10 6 8.4167 3.0418 0.7563 11 6 8.8548 3.5100 2.1459 12 6 10.3475 3.2296 2.3312 13 1 10.5589 2.1653 2.2269 14 6 10.8484 3.7646 3.6988 15 6 12.3465 4.0301 3.4379 16 7 12.5155 4.1904 1.9861 17 6 13.7017 4.4185 1.3412 18 1 13.7207 4.5217 0.2663 19 6 14.8796 4.5173 2.0688 20 7 14.8564 4.3922 3.3789 21 14 16.4979 4.8278 1.1889 22 1 16.4219 6.1152 0.4527 23 1 17.5983 4.8914 2.1841 24 1 16.7598 3.7242 0.2304 25 6 11.1965 4.0640 1.3399 26 6 8.0583 2.7576 3.2143 27 6 6.5679 3.0677 3.0473 28 7 3.6194 -0.6168 -0.0004 29 7 2.2965 -1.0880 0.0060 30 1 2.0094 -2.0146 0.0107 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3633 0.8903 0.5134 33 1 -0.3633 -0.8898 0.5143 34 1 5.5742 1.1513 -0.5145 35 1 4.4700 2.5474 -0.5134 36 1 6.5950 2.9289 -0.3847 37 1 6.7860 4.4311 0.5556 38 1 9.0009 3.5610 -0.0034 39 1 8.5770 1.9673 0.6672 40 1 8.6717 4.5802 2.2428 41 1 10.3337 4.6883 3.9635 42 1 10.7192 3.0131 4.4776 43 1 12.9387 3.1851 3.7889 44 1 12.6592 4.9400 3.9501 45 1 15.6795 4.4616 3.8874 46 1 11.2892 3.5423 0.3873 47 1 10.7492 5.0468 1.1914 48 1 8.3873 3.0746 4.2040 49 1 8.2214 1.6856 3.1028 50 1 6.3899 4.1241 3.2487 51 1 5.9863 2.4604 3.7408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039137589.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:58 Heat of formation + Delta-G solvation = 39.399130 kcal Electronic energy + Delta-G solvation = -30359.582547 eV Core-core repulsion = 26294.736993 eV Total energy + Delta-G solvation = -4064.845554 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.18483 -41.26065 -39.72155 -37.93539 -35.22917 -34.74030 -33.49382 -33.36235 -32.33672 -31.22161 -30.45862 -29.19391 -28.61057 -26.83072 -25.15288 -24.25474 -22.95022 -22.14203 -21.71766 -21.45860 -20.79261 -19.90321 -18.87892 -18.79424 -18.35155 -17.02681 -16.77007 -16.61151 -16.43883 -16.13929 -15.71863 -15.31593 -15.20676 -14.98794 -14.68121 -14.48189 -14.26408 -14.07136 -13.81249 -13.75414 -13.65300 -13.58043 -13.45212 -13.15858 -13.08819 -12.88402 -12.74536 -12.68183 -12.29667 -12.16461 -12.11361 -12.00371 -11.78342 -11.58744 -11.32362 -11.28808 -11.12280 -11.10261 -11.00333 -10.80346 -10.67431 -10.44581 -9.62501 -8.85132 -7.82222 -5.17295 0.55864 1.45748 1.49407 1.55602 1.56732 1.61607 1.73763 2.17708 2.51594 2.99066 3.35488 3.50244 3.57812 3.68813 3.74336 3.84750 3.91464 4.00008 4.17529 4.24283 4.34162 4.36511 4.39357 4.46538 4.51403 4.53467 4.67251 4.71011 4.74635 4.77488 4.88764 4.89102 4.96558 5.00509 5.04921 5.06396 5.12306 5.14906 5.22988 5.25702 5.31046 5.35605 5.45993 5.49444 5.61445 5.65562 5.73231 5.82144 6.19844 6.23509 6.39109 7.05507 7.12079 7.13312 7.82838 8.47677 9.28074 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030115 B = 0.001763 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.539516 B =15882.210029 C =16319.467759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.568 5.568 4 C 0.235 3.765 5 C -0.046 4.046 6 C 0.522 3.478 7 O -0.586 6.586 8 N -0.604 5.604 9 C 0.105 3.895 10 C -0.129 4.129 11 C -0.064 4.064 12 C -0.079 4.079 13 H 0.062 0.938 14 C -0.124 4.124 15 C 0.183 3.817 16 N -0.631 5.631 17 C -0.241 4.241 18 H 0.084 0.916 19 C -0.071 4.071 20 N -0.954 5.954 21 Si 0.978 3.022 22 H -0.276 1.276 23 H -0.296 1.296 24 H -0.277 1.277 25 C 0.139 3.861 26 C -0.120 4.120 27 C 0.115 3.885 28 N -0.341 5.341 29 N -0.476 5.476 30 H 0.454 0.546 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.002 0.998 44 H 0.001 0.999 45 H 0.245 0.755 46 H 0.041 0.959 47 H 0.028 0.972 48 H 0.080 0.920 49 H 0.053 0.947 50 H 0.083 0.917 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.949 -7.192 -9.181 33.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.008 3.992 3 N -0.298 5.298 4 C -0.048 4.048 5 C -0.088 4.088 6 C 0.310 3.690 7 O -0.466 6.466 8 N -0.337 5.337 9 C -0.017 4.017 10 C -0.168 4.168 11 C -0.083 4.083 12 C -0.098 4.098 13 H 0.080 0.920 14 C -0.162 4.162 15 C 0.057 3.943 16 N -0.357 5.357 17 C -0.370 4.370 18 H 0.102 0.898 19 C -0.264 4.264 20 N -0.603 5.603 21 Si 0.807 3.193 22 H -0.201 1.201 23 H -0.223 1.223 24 H -0.203 1.203 25 C 0.014 3.986 26 C -0.158 4.158 27 C -0.007 4.007 28 N -0.170 5.170 29 N -0.196 5.196 30 H 0.303 0.697 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.131 0.869 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.021 0.979 44 H 0.020 0.980 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.046 0.954 48 H 0.099 0.901 49 H 0.072 0.928 50 H 0.102 0.898 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -30.483 -7.445 -8.670 32.555 hybrid contribution 1.366 -0.581 0.235 1.502 sum -29.118 -8.026 -8.435 31.359 Atomic orbital electron populations 1.20648 0.80056 1.06356 1.06244 1.25262 0.98328 0.82026 0.93625 1.70294 1.01584 1.31246 1.26687 1.23714 0.93504 0.90076 0.97503 1.20080 0.93847 0.99890 0.94966 1.20591 0.79616 0.77678 0.91121 1.90687 1.54722 1.53387 1.47832 1.48180 1.30470 1.46660 1.08381 1.21990 0.90372 0.99948 0.89352 1.21906 0.95764 1.02005 0.97082 1.21007 0.91534 1.00481 0.95239 1.22225 0.94468 0.98547 0.94564 0.91992 1.22765 0.95139 1.00788 0.97518 1.20911 0.92349 0.96767 0.84241 1.44837 1.03114 1.84566 1.03201 1.19471 0.84901 1.40873 0.91773 0.89818 1.25686 1.01297 1.02937 0.96482 1.70214 1.26364 1.57936 1.05830 0.85150 0.78842 0.78336 0.77012 1.20143 1.22258 1.20266 1.21770 0.84833 0.96743 0.95222 1.21868 0.93695 1.00255 0.99988 1.21571 0.94980 1.01493 0.82646 1.77873 0.98886 1.12687 1.27599 1.47877 1.03283 1.11031 1.57427 0.69703 0.86772 0.88402 0.87200 0.84283 0.83371 0.86949 0.88990 0.89301 0.91994 0.90067 0.90911 0.90992 0.97929 0.98031 0.94618 0.94050 0.95392 0.90119 0.92798 0.89836 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.51 71.24 0.75 0.40 16 2 C 0.29 4.59 8.24 138.23 1.14 5.73 16 3 N -0.57 -13.13 11.19 -179.72 -2.01 -15.14 16 4 C 0.24 5.62 6.63 138.63 0.92 6.54 16 5 C -0.05 -0.82 4.68 29.10 0.14 -0.68 16 6 C 0.52 12.43 7.69 87.66 0.67 13.11 16 7 O -0.59 -19.58 15.45 -3.03 -0.05 -19.62 16 8 N -0.60 -11.74 2.98 -819.82 -2.44 -14.18 16 9 C 0.10 1.39 6.31 86.22 0.54 1.93 16 10 C -0.13 -2.29 5.20 30.53 0.16 -2.14 16 11 C -0.06 -1.41 1.65 -10.76 -0.02 -1.43 16 12 C -0.08 -2.48 2.56 -9.40 -0.02 -2.50 16 13 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 14 C -0.12 -4.45 5.43 31.80 0.17 -4.28 16 15 C 0.18 9.24 5.38 86.74 0.47 9.71 16 16 N -0.63 -32.72 3.39 -691.90 -2.35 -35.06 16 17 C -0.24 -13.69 10.28 84.03 0.86 -12.83 16 18 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 19 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 20 N -0.95 -58.98 10.31 21.65 0.22 -58.75 16 21 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 C 0.14 5.37 5.80 86.86 0.50 5.87 16 26 C -0.12 -2.59 5.20 30.66 0.16 -2.43 16 27 C 0.12 2.40 6.43 86.35 0.56 2.95 16 28 N -0.34 -8.30 12.80 -51.33 -0.66 -8.96 16 29 N -0.48 -7.80 7.45 -50.71 -0.38 -8.18 16 30 H 0.45 3.76 8.96 -213.09 -1.91 1.85 16 31 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.11 -0.06 8.14 -2.38 -0.02 -0.08 16 34 H 0.14 1.80 7.68 -2.39 -0.02 1.78 16 35 H 0.15 1.75 7.95 -2.39 -0.02 1.73 16 36 H 0.11 0.88 5.93 -2.39 -0.01 0.87 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 1.52 7.32 -2.39 -0.02 1.50 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.74 8.13 -2.39 -0.02 1.72 16 41 H 0.07 2.38 8.04 -2.39 -0.02 2.36 16 42 H 0.07 2.37 8.09 -2.39 -0.02 2.35 16 43 H 0.00 0.14 7.38 -2.39 -0.02 0.12 16 44 H 0.00 0.08 7.50 -2.39 -0.02 0.06 16 45 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 46 H 0.04 1.54 8.03 -2.38 -0.02 1.52 16 47 H 0.03 1.04 8.02 -2.39 -0.02 1.02 16 48 H 0.08 1.72 7.32 -2.38 -0.02 1.70 16 49 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.07 1.78 7.00 -2.39 -0.02 1.76 16 Total: -1.00 -86.99 400.54 0.86 -86.13 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -0.97 Total: 9.07 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 7.46 Total: 16.27 kcal Atomic # 7 Polarization: -132.67 SS G_CDS: -7.61 Total: -140.28 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.05 Total: -19.62 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -86.99 0.86 -86.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039137589.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.526 kcal (2) G-P(sol) polarization free energy of solvation -86.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds