Wall clock time and date at job start Wed Apr 1 2020 05:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36587 * 126.58204 * 2 1 4 4 C 1.47531 * 125.77138 * 0.05419 * 3 2 1 5 5 O 1.21590 * 119.99653 * 2.75836 * 4 3 2 6 6 N 1.34771 * 120.00170 * 182.77000 * 4 3 2 7 7 C 1.46925 * 120.63092 * 5.58770 * 6 4 3 8 8 C 1.53199 * 108.77402 * 126.37338 * 7 6 4 9 9 C 1.53038 * 109.31139 * 54.63344 * 8 7 6 10 10 C 1.53037 * 109.53980 * 298.63951 * 9 8 7 11 11 C 1.46923 * 120.63096 * 185.31589 * 6 4 3 12 12 H 1.09003 * 109.58857 * 113.83666 * 11 6 4 13 13 C 1.53001 * 109.58636 * 353.41288 * 11 6 4 14 14 H 1.09001 * 110.63752 * 52.58041 * 13 11 6 15 15 C 1.55153 * 110.72183 * 289.44290 * 13 11 6 16 16 C 1.54916 * 101.58113 * 206.13449 * 15 13 11 17 17 N 1.47427 * 104.83294 * 37.00522 * 16 15 13 18 18 C 1.36935 * 125.64905 * 155.83820 * 17 16 15 19 19 H 1.08000 * 119.99828 * 334.97790 * 18 17 16 20 20 C 1.38803 * 120.00284 * 154.98054 * 18 17 16 21 21 N 1.31615 * 120.00323 * 155.86381 * 20 18 17 22 22 Si 1.86800 * 119.99931 * 335.86700 * 20 18 17 23 23 H 1.48503 * 109.47460 * 87.19784 * 22 20 18 24 24 H 1.48504 * 109.47348 * 207.19676 * 22 20 18 25 25 H 1.48499 * 109.47009 * 327.19949 * 22 20 18 26 26 C 1.47025 * 108.70077 * 335.87436 * 17 16 15 27 27 N 1.34401 * 108.46396 * 180.02562 * 3 2 1 28 28 N 1.28764 * 109.51952 * 359.97438 * 27 3 2 29 29 N 1.34818 * 126.57866 * 180.02562 * 2 1 3 30 30 C 1.46497 * 126.59509 * 359.96639 * 29 2 1 31 31 H 1.08999 * 109.47050 * 90.00565 * 1 2 3 32 32 H 1.09004 * 109.47368 * 210.00508 * 1 2 3 33 33 H 1.08996 * 109.47156 * 330.00412 * 1 2 3 34 34 H 1.08998 * 109.59274 * 246.16130 * 7 6 4 35 35 H 1.08997 * 109.58873 * 6.44649 * 7 6 4 36 36 H 1.08999 * 109.49853 * 174.58488 * 8 7 6 37 37 H 1.09002 * 109.49786 * 294.65580 * 8 7 6 38 38 H 1.09004 * 109.45869 * 58.65949 * 9 8 7 39 39 H 1.09004 * 109.45890 * 178.61061 * 9 8 7 40 40 H 1.09011 * 109.49486 * 181.32102 * 10 9 8 41 41 H 1.08996 * 109.49573 * 301.37285 * 10 9 8 42 42 H 1.09001 * 111.00431 * 324.19986 * 15 13 11 43 43 H 1.08992 * 111.01029 * 88.05844 * 15 13 11 44 44 H 1.09001 * 110.36575 * 155.84659 * 16 15 13 45 45 H 1.08995 * 110.36404 * 278.06079 * 16 15 13 46 46 H 0.97003 * 120.00167 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.88066 * 241.63769 * 26 17 16 48 48 H 1.09000 * 109.88003 * 120.48028 * 26 17 16 49 49 H 1.08998 * 109.47289 * 90.00262 * 30 29 2 50 50 H 1.09005 * 109.47089 * 210.00335 * 30 29 2 51 51 H 1.09001 * 109.47070 * 329.99736 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8738 2.5027 0.0011 5 8 0.6872 2.7631 0.0529 6 7 2.7804 3.4983 -0.0554 7 6 4.2073 3.2017 -0.2413 8 6 4.7256 4.0038 -1.4393 9 6 4.4142 5.4872 -1.2281 10 6 2.8994 5.6838 -1.1339 11 6 2.3599 4.9012 0.0618 12 1 2.7581 5.3263 0.9831 13 6 0.8319 4.9791 0.0761 14 1 0.4205 4.3156 0.8367 15 6 0.2517 4.6381 -1.3219 16 6 -1.0952 5.4029 -1.2946 17 7 -0.8057 6.6514 -0.5661 18 6 -1.5070 7.8222 -0.6786 19 1 -2.0601 8.0356 -1.5814 20 6 -1.5069 8.7346 0.3673 21 7 -1.7462 10.0070 0.1308 22 14 -1.1671 8.1567 2.1109 23 1 0.2973 8.1606 2.3572 24 1 -1.8334 9.0699 3.0739 25 1 -1.6951 6.7800 2.2877 26 6 0.3614 6.4316 0.3008 27 7 3.5984 0.6788 -0.0006 28 7 3.6299 -0.6084 -0.0004 29 7 2.3104 -1.0826 -0.0005 30 6 1.8863 -2.4849 -0.0004 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5137 34 1 4.7594 3.4854 0.6547 35 1 4.3377 2.1359 -0.4286 36 1 5.8032 3.8675 -1.5296 37 1 4.2372 3.6551 -2.3493 38 1 4.8828 5.8287 -0.3051 39 1 4.8038 6.0631 -2.0675 40 1 2.6773 6.7435 -1.0070 41 1 2.4280 5.3203 -2.0469 42 1 0.8980 5.0136 -2.1153 43 1 0.0898 3.5654 -1.4267 44 1 -1.4266 5.6239 -2.3092 45 1 -1.8512 4.8209 -0.7676 46 1 -1.7465 10.6446 0.8618 47 1 0.0799 6.5729 1.3442 48 1 1.1583 7.1252 0.0325 49 1 1.7807 -2.8326 -1.0280 50 1 2.6333 -3.0904 0.5131 51 1 0.9295 -2.5751 0.5139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039208108.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:40 Heat of formation + Delta-G solvation = 114.190249 kcal Electronic energy + Delta-G solvation = -32950.110522 eV Core-core repulsion = 28888.508154 eV Total energy + Delta-G solvation = -4061.602368 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.36563 -41.75203 -38.98587 -38.25811 -35.99315 -34.88659 -33.80980 -33.44555 -32.84052 -30.79291 -29.36375 -29.17668 -28.33425 -26.66575 -25.70753 -24.68330 -23.98063 -22.40863 -22.21889 -21.71043 -21.15343 -19.89078 -18.95068 -18.22112 -17.65128 -17.44866 -16.99779 -16.73466 -16.41836 -16.21272 -15.67789 -15.40429 -15.23058 -15.08827 -14.94595 -14.54932 -14.50394 -14.28949 -14.16133 -14.09223 -13.91120 -13.86202 -13.58105 -13.28696 -13.21270 -13.00211 -12.85255 -12.69589 -12.62910 -12.37319 -12.26308 -11.87301 -11.75788 -11.64354 -11.58308 -11.32292 -11.15870 -11.12490 -10.89347 -10.68132 -10.12603 -10.02943 -9.40425 -8.93589 -8.21512 -5.46593 0.14484 0.60726 1.14777 1.27181 1.34715 1.47394 1.94476 2.25081 2.40585 3.02059 3.13662 3.33462 3.44909 3.65140 3.69682 3.78151 3.85520 3.95988 4.05480 4.16605 4.22248 4.28260 4.31474 4.36357 4.37088 4.53489 4.57741 4.62617 4.65821 4.67755 4.69605 4.79277 4.80900 4.85484 4.97019 4.99667 5.05852 5.09469 5.14902 5.20603 5.25671 5.31701 5.35057 5.38013 5.49928 5.54656 5.61409 5.75214 5.82736 6.10787 6.44276 6.80151 6.88738 7.23486 7.55331 8.18713 8.99570 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.003535 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.723624 B = 7918.268475 C = 9003.631512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.131 3.869 3 C -0.123 4.123 4 C 0.588 3.412 5 O -0.529 6.529 6 N -0.588 5.588 7 C 0.076 3.924 8 C -0.124 4.124 9 C -0.115 4.115 10 C -0.135 4.135 11 C 0.164 3.836 12 H 0.073 0.927 13 C -0.081 4.081 14 H 0.101 0.899 15 C -0.103 4.103 16 C 0.128 3.872 17 N -0.624 5.624 18 C -0.235 4.235 19 H 0.056 0.944 20 C -0.028 4.028 21 N -0.950 5.950 22 Si 0.945 3.055 23 H -0.274 1.274 24 H -0.304 1.304 25 H -0.280 1.280 26 C 0.119 3.881 27 N -0.219 5.219 28 N -0.094 5.094 29 N -0.352 5.352 30 C 0.073 3.927 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.136 0.864 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.038 0.962 45 H 0.020 0.980 46 H 0.263 0.737 47 H 0.002 0.998 48 H 0.030 0.970 49 H 0.108 0.892 50 H 0.111 0.889 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.380 -29.611 -1.048 32.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.008 4.008 3 C -0.263 4.263 4 C 0.375 3.625 5 O -0.407 6.407 6 N -0.319 5.319 7 C -0.046 4.046 8 C -0.162 4.162 9 C -0.153 4.153 10 C -0.173 4.173 11 C 0.061 3.939 12 H 0.091 0.909 13 C -0.100 4.100 14 H 0.119 0.881 15 C -0.141 4.141 16 C 0.003 3.997 17 N -0.351 5.351 18 C -0.364 4.364 19 H 0.074 0.926 20 C -0.223 4.223 21 N -0.596 5.596 22 Si 0.775 3.225 23 H -0.200 1.200 24 H -0.232 1.232 25 H -0.206 1.206 26 C -0.006 4.006 27 N -0.091 5.091 28 N -0.073 5.073 29 N -0.138 5.138 30 C -0.066 4.066 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.153 0.847 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.122 0.878 44 H 0.057 0.943 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.019 0.981 48 H 0.048 0.952 49 H 0.126 0.874 50 H 0.130 0.870 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.192 -29.753 -0.971 32.979 hybrid contribution -1.137 0.877 0.945 1.719 sum 13.056 -28.876 -0.026 31.691 Atomic orbital electron populations 1.20828 0.82669 1.06216 1.05613 1.22247 0.97244 0.85835 0.95474 1.21299 0.89442 0.95493 1.20063 1.17063 0.85316 0.82881 0.77200 1.90760 1.16850 1.82267 1.50869 1.47867 1.08511 1.04845 1.70688 1.22788 0.78446 1.04769 0.98607 1.21859 1.02167 0.94481 0.97709 1.21530 0.94071 0.97014 1.02689 1.22027 0.97252 0.99768 0.98249 1.20979 0.93521 0.80747 0.98685 0.90936 1.22607 0.93740 0.93069 1.00551 0.88116 1.23165 0.94762 1.00845 0.95290 1.21807 0.96835 0.86218 0.94818 1.44887 1.30907 1.08833 1.50450 1.18595 1.25874 0.93047 0.98880 0.92600 1.25664 1.00437 0.95200 1.01014 1.69975 1.55269 1.01728 1.32676 0.85877 0.77707 0.76824 0.82055 1.20027 1.23238 1.20621 1.21845 0.89399 0.96942 0.92386 1.74140 1.19152 1.04157 1.11633 1.81895 0.97926 1.03593 1.23864 1.50547 1.05245 1.09254 1.48756 1.22695 1.04042 0.73314 1.06566 0.87813 0.87336 0.88778 0.91274 0.84745 0.88660 0.92366 0.91346 0.90816 0.91953 0.91160 0.91783 0.87813 0.94344 0.96206 0.92772 0.98088 0.95180 0.87350 0.87039 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.60 71.24 0.68 -0.46 16 2 C 0.13 2.28 7.02 41.71 0.29 2.57 16 3 C -0.12 -2.90 6.75 40.82 0.28 -2.62 16 4 C 0.59 16.10 7.30 86.70 0.63 16.74 16 5 O -0.53 -16.18 7.69 -4.00 -0.03 -16.21 16 6 N -0.59 -15.58 2.97 -799.57 -2.37 -17.95 16 7 C 0.08 1.65 6.17 86.36 0.53 2.18 16 8 C -0.12 -2.35 6.08 30.67 0.19 -2.16 16 9 C -0.12 -2.48 5.89 30.62 0.18 -2.30 16 10 C -0.13 -3.85 4.74 30.53 0.14 -3.70 16 11 C 0.16 4.98 2.69 44.83 0.12 5.10 16 12 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 13 C -0.08 -3.00 2.06 -9.61 -0.02 -3.02 16 14 H 0.10 3.97 5.87 -11.08 -0.06 3.90 16 15 C -0.10 -3.71 5.44 31.99 0.17 -3.54 16 16 C 0.13 5.60 7.23 86.86 0.63 6.23 16 17 N -0.62 -32.83 3.10 -691.99 -2.15 -34.97 16 18 C -0.24 -14.45 10.51 84.03 0.88 -13.57 16 19 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 20 C -0.03 -1.73 5.41 84.86 0.46 -1.27 16 21 N -0.95 -62.22 13.97 21.65 0.30 -61.91 16 22 Si 0.94 50.65 24.60 68.60 1.69 52.34 16 23 H -0.27 -13.93 6.85 99.48 0.68 -13.25 16 24 H -0.30 -16.07 7.11 99.48 0.71 -15.36 16 25 H -0.28 -14.97 7.06 99.48 0.70 -14.26 16 26 C 0.12 5.58 5.13 86.73 0.45 6.02 16 27 N -0.22 -5.14 8.68 -49.99 -0.43 -5.58 16 28 N -0.09 -1.97 13.78 37.02 0.51 -1.46 16 29 N -0.35 -5.04 4.03 -355.11 -1.43 -6.47 16 30 C 0.07 0.20 11.33 127.77 1.45 1.65 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.11 0.51 7.18 -2.38 -0.02 0.49 16 33 H 0.09 1.67 6.37 -2.39 -0.02 1.66 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.14 2.99 3.90 -72.04 -0.28 2.71 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.06 2.04 6.58 -2.38 -0.02 2.02 16 41 H 0.07 2.10 5.59 -2.39 -0.01 2.08 16 42 H 0.06 2.25 5.32 -2.39 -0.01 2.24 16 43 H 0.10 3.47 5.55 -4.46 -0.02 3.44 16 44 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 47 H 0.00 0.08 3.57 -2.39 -0.01 0.07 16 48 H 0.03 1.44 6.17 -2.39 -0.01 1.42 16 49 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 50 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 51 H 0.12 -0.29 7.16 -2.39 -0.02 -0.31 16 Total: -1.00 -79.57 372.39 3.75 -75.82 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.60 Total: 8.55 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 7.07 Total: 7.85 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -5.57 Total: -128.35 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.03 Total: -16.21 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 1.69 Total: 52.34 kcal Total: -79.57 3.75 -75.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039208108.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.015 kcal (2) G-P(sol) polarization free energy of solvation -79.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds