Wall clock time and date at job start Wed Apr 1 2020 05:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36599 * 126.58210 * 2 1 4 4 C 1.47523 * 125.76968 * 0.04180 * 3 2 1 5 5 O 1.21598 * 119.99870 * 6.29132 * 4 3 2 6 6 N 1.34780 * 120.00008 * 186.29784 * 4 3 2 7 7 C 1.46960 * 120.65199 * 5.91206 * 6 4 3 8 8 C 1.53194 * 108.88478 * 233.53349 * 7 6 4 9 9 C 1.53046 * 109.31241 * 305.44258 * 8 7 6 10 10 C 1.53044 * 109.53730 * 61.36356 * 9 8 7 11 11 C 1.46926 * 120.62621 * 186.09071 * 6 4 3 12 12 H 1.09005 * 109.58169 * 246.32187 * 11 6 4 13 13 C 1.52996 * 109.58956 * 6.60472 * 11 6 4 14 14 H 1.09000 * 110.64216 * 40.63530 * 13 11 6 15 15 C 1.55160 * 110.72045 * 277.29426 * 13 11 6 16 16 C 1.55126 * 101.48345 * 205.97144 * 15 13 11 17 17 N 1.47424 * 104.72380 * 37.29494 * 16 15 13 18 18 C 1.36944 * 125.64669 * 155.81921 * 17 16 15 19 19 H 1.07994 * 119.99982 * 179.69780 * 18 17 16 20 20 C 1.38812 * 119.99859 * 359.69119 * 18 17 16 21 21 N 1.31621 * 120.00169 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00026 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46682 * 59.99802 * 22 20 18 24 24 H 1.48501 * 109.47238 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46875 * 300.00218 * 22 20 18 26 26 C 1.47018 * 108.70618 * 335.55201 * 17 16 15 27 27 N 1.34403 * 108.46092 * 179.77282 * 3 2 1 28 28 N 1.28768 * 109.52215 * 0.23297 * 27 3 2 29 29 N 1.34817 * 126.58230 * 180.16962 * 2 1 3 30 30 C 1.46502 * 126.59385 * 359.96511 * 29 2 1 31 31 H 1.09000 * 109.46825 * 89.99769 * 1 2 3 32 32 H 1.08995 * 109.47113 * 209.99551 * 1 2 3 33 33 H 1.08997 * 109.46711 * 329.99456 * 1 2 3 34 34 H 1.08991 * 109.46770 * 113.75208 * 7 6 4 35 35 H 1.09000 * 109.71511 * 353.45601 * 7 6 4 36 36 H 1.08999 * 109.49707 * 185.49762 * 8 7 6 37 37 H 1.08996 * 109.50096 * 65.39334 * 8 7 6 38 38 H 1.09004 * 109.45658 * 301.34957 * 9 8 7 39 39 H 1.08996 * 109.46120 * 181.38474 * 9 8 7 40 40 H 1.09001 * 109.49744 * 178.68371 * 10 9 8 41 41 H 1.09008 * 109.51926 * 58.60494 * 10 9 8 42 42 H 1.08994 * 111.00251 * 324.20871 * 15 13 11 43 43 H 1.08998 * 110.99835 * 88.02206 * 15 13 11 44 44 H 1.09003 * 110.49609 * 278.45222 * 16 15 13 45 45 H 1.09000 * 110.34019 * 156.06376 * 16 15 13 46 46 H 0.97001 * 120.00151 * 180.02562 * 21 20 18 47 47 H 1.08995 * 109.88269 * 120.69812 * 26 17 16 48 48 H 1.08990 * 109.88572 * 241.87447 * 26 17 16 49 49 H 1.08996 * 109.47151 * 270.27717 * 30 29 2 50 50 H 1.09003 * 109.46652 * 30.27429 * 30 29 2 51 51 H 1.08998 * 109.47210 * 150.27143 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0009 5 8 0.6921 2.7647 0.1171 6 7 2.7750 3.4967 -0.1273 7 6 4.1880 3.1966 -0.3978 8 6 5.0537 3.8952 0.6554 9 6 4.7207 5.3889 0.6746 10 6 3.2504 5.5807 1.0534 11 6 2.3642 4.9011 0.0048 12 1 2.4790 5.4070 -0.9539 13 6 0.9014 4.9682 0.4481 14 1 0.6929 4.2083 1.2012 15 6 -0.0487 4.8156 -0.7691 16 6 -1.3141 5.5603 -0.2684 17 7 -0.7950 6.7029 0.5051 18 6 -1.4633 7.8738 0.7450 19 1 -0.9961 8.6521 1.3301 20 6 -2.7412 8.0604 0.2361 21 7 -3.3103 7.1121 -0.4775 22 14 -3.6527 9.6579 0.5627 23 1 -2.8752 10.7940 0.0058 24 1 -4.9879 9.6075 -0.0854 25 1 -3.8191 9.8424 2.0268 26 6 0.5566 6.3746 0.9817 27 7 3.5984 0.6789 0.0051 28 7 3.6299 -0.6084 0.0033 29 7 2.3105 -1.0826 -0.0032 30 6 1.8865 -2.4849 -0.0066 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5137 33 1 -0.3633 0.8899 0.5139 34 1 4.4535 3.5620 -1.3897 35 1 4.3512 2.1200 -0.3491 36 1 6.1068 3.7605 0.4084 37 1 4.8516 3.4649 1.6362 38 1 4.8995 5.8135 -0.3133 39 1 5.3528 5.8925 1.4060 40 1 3.0199 6.6454 1.0897 41 1 3.0648 5.1347 2.0306 42 1 0.3684 5.2979 -1.6530 43 1 -0.2665 3.7658 -0.9654 44 1 -1.9119 4.9100 0.3704 45 1 -1.9061 5.9117 -1.1134 46 1 -4.2032 7.2426 -0.8335 47 1 1.2718 7.1022 0.5981 48 1 0.5750 6.3724 2.0714 49 1 1.7770 -2.8339 1.0201 50 1 0.9315 -2.5744 -0.5245 51 1 2.6352 -3.0896 -0.5182 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039208112.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:51 Heat of formation + Delta-G solvation = 129.666390 kcal Electronic energy + Delta-G solvation = -32582.911581 eV Core-core repulsion = 28521.980309 eV Total energy + Delta-G solvation = -4060.931272 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.48858 -40.31624 -37.31404 -36.75939 -35.20626 -33.11538 -32.67608 -32.29722 -30.90158 -28.97117 -28.34655 -27.73103 -26.98708 -25.20214 -24.29904 -23.22037 -22.68789 -21.43087 -20.72042 -19.68198 -19.50868 -19.21475 -17.34562 -16.66064 -16.62659 -16.00857 -15.90738 -15.03841 -14.87094 -14.64882 -14.46954 -14.15478 -13.87683 -13.73864 -13.65941 -13.60341 -13.31869 -13.23780 -12.98077 -12.77910 -12.68587 -12.31903 -12.15277 -11.89244 -11.62351 -11.53774 -11.29406 -11.05482 -10.82966 -10.75708 -10.69582 -10.62130 -10.47266 -10.09018 -10.00722 -9.80171 -9.62179 -9.48408 -9.34719 -8.98842 -8.73776 -8.44610 -8.20197 -6.61554 -5.47036 -2.88490 0.94907 1.61290 1.79688 3.10781 3.37197 3.49216 3.52726 3.54464 4.01700 4.06598 4.39616 4.54339 4.57323 4.63047 4.84063 4.87725 4.97850 5.02635 5.09847 5.22510 5.27932 5.30813 5.46268 5.48146 5.55933 5.64018 5.69434 5.78672 5.81589 5.88379 5.97069 6.08337 6.14900 6.19056 6.21037 6.22237 6.28478 6.36903 6.45427 6.58079 6.69767 6.76553 6.94415 7.10017 7.26239 7.38040 7.59589 7.76739 7.81723 7.88690 8.09599 8.47212 8.58177 9.40821 10.02453 10.70361 11.55282 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.003202 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.487684 B = 8742.695692 C =10483.812578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.124 3.876 3 C -0.096 4.096 4 C 0.587 3.413 5 O -0.499 6.499 6 N -0.590 5.590 7 C 0.071 3.929 8 C -0.128 4.128 9 C -0.122 4.122 10 C -0.132 4.132 11 C 0.160 3.840 12 H 0.071 0.929 13 C -0.090 4.090 14 H 0.096 0.904 15 C -0.129 4.129 16 C 0.155 3.845 17 N -0.605 5.605 18 C -0.217 4.217 19 H 0.074 0.926 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.138 3.862 27 N -0.206 5.206 28 N -0.077 5.077 29 N -0.365 5.365 30 C 0.088 3.912 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.058 0.942 35 H 0.138 0.862 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.008 0.992 45 H 0.099 0.901 46 H 0.250 0.750 47 H 0.019 0.981 48 H 0.014 0.986 49 H 0.088 0.912 50 H 0.097 0.903 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.825 -19.673 -0.256 24.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.014 4.014 3 C -0.235 4.235 4 C 0.373 3.627 5 O -0.374 6.374 6 N -0.322 5.322 7 C -0.053 4.053 8 C -0.166 4.166 9 C -0.159 4.159 10 C -0.170 4.170 11 C 0.058 3.942 12 H 0.089 0.911 13 C -0.109 4.109 14 H 0.114 0.886 15 C -0.167 4.167 16 C 0.030 3.970 17 N -0.331 5.331 18 C -0.346 4.346 19 H 0.091 0.909 20 C -0.209 4.209 21 N -0.571 5.571 22 Si 0.742 3.258 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.214 1.214 26 C 0.011 3.989 27 N -0.078 5.078 28 N -0.055 5.055 29 N -0.152 5.152 30 C -0.054 4.054 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.138 0.862 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.104 0.896 44 H 0.026 0.974 45 H 0.117 0.883 46 H 0.060 0.940 47 H 0.037 0.963 48 H 0.032 0.968 49 H 0.106 0.894 50 H 0.115 0.885 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 15.459 -19.890 -0.241 25.192 hybrid contribution -1.209 0.927 0.250 1.544 sum 14.250 -18.962 0.008 23.720 Atomic orbital electron populations 1.20793 0.84375 1.05875 1.04825 1.21972 0.96355 0.86114 0.96919 1.21511 0.88565 0.96010 1.17433 1.16885 0.85647 0.81990 0.78178 1.90878 1.15984 1.81604 1.48961 1.47821 1.08507 1.05881 1.69969 1.22712 0.79504 1.05510 0.97576 1.21832 0.99243 0.95726 0.99817 1.21572 0.96617 0.96122 1.01610 1.22061 0.94125 1.01664 0.99162 1.21382 0.95180 0.79296 0.98348 0.91149 1.22552 0.90814 0.97214 1.00320 0.88590 1.23383 0.97652 1.00715 0.94982 1.21927 0.91961 0.86570 0.96518 1.44559 1.12557 1.15148 1.60839 1.19042 0.96738 0.91860 1.26988 0.90853 1.24766 0.97225 0.98101 1.00835 1.69844 1.15042 1.32052 1.40116 0.86201 0.79003 0.83028 0.77559 1.21332 1.21691 1.21396 1.21444 0.88434 0.93338 0.95660 1.74063 1.18979 1.03513 1.11263 1.81967 0.96294 1.03967 1.23301 1.50221 1.06406 1.07747 1.50778 1.22153 1.02452 0.76122 1.04642 0.88945 0.90787 0.86234 0.92355 0.84529 0.91222 0.91793 0.91983 0.92025 0.89991 0.91607 0.94169 0.89592 0.97407 0.88319 0.93971 0.96345 0.96793 0.89351 0.88473 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 9.45 36.01 0.34 -0.53 16 2 C 0.12 1.34 7.02 -81.87 -0.57 0.77 16 3 C -0.10 -1.29 6.75 -83.55 -0.56 -1.85 16 4 C 0.59 9.02 7.42 -12.47 -0.09 8.93 16 5 O -0.50 -8.64 7.64 5.28 0.04 -8.60 16 6 N -0.59 -8.62 2.98 -166.42 -0.50 -9.12 16 7 C 0.07 0.86 6.31 -3.69 -0.02 0.84 16 8 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 9 C -0.12 -1.37 5.88 -26.68 -0.16 -1.53 16 10 C -0.13 -1.84 4.71 -26.61 -0.13 -1.96 16 11 C 0.16 2.56 2.60 -67.60 -0.18 2.38 16 12 H 0.07 1.16 7.76 -51.93 -0.40 0.76 16 13 C -0.09 -1.76 1.92 -88.78 -0.17 -1.93 16 14 H 0.10 1.99 5.92 -51.93 -0.31 1.68 16 15 C -0.13 -2.79 5.79 -24.46 -0.14 -2.93 16 16 C 0.15 4.10 5.91 -2.41 -0.01 4.09 16 17 N -0.61 -16.64 3.39 -169.94 -0.58 -17.22 16 18 C -0.22 -6.40 10.27 -15.06 -0.15 -6.55 16 19 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.42 5.49 -17.43 -0.10 -0.51 16 21 N -0.92 -28.12 10.08 55.49 0.56 -27.57 16 22 Si 0.91 22.94 29.55 -169.99 -5.02 17.91 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 C 0.14 3.10 5.85 -3.06 -0.02 3.09 16 27 N -0.21 -2.71 8.70 32.85 0.29 -2.43 16 28 N -0.08 -0.93 13.78 60.35 0.83 -0.09 16 29 N -0.36 -3.40 4.03 -63.59 -0.26 -3.66 16 30 C 0.09 0.35 11.17 59.85 0.67 1.02 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.42 7.84 -51.93 -0.41 0.01 16 33 H 0.12 1.35 6.32 -51.93 -0.33 1.02 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.14 1.72 3.67 -121.09 -0.44 1.27 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.18 6.45 -51.93 -0.34 0.84 16 41 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 42 H 0.04 0.87 7.78 -51.93 -0.40 0.46 16 43 H 0.09 1.79 5.47 -52.49 -0.29 1.51 16 44 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.10 2.91 5.86 -51.93 -0.30 2.60 16 46 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.02 0.41 6.48 -51.93 -0.34 0.07 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.10 0.19 7.78 -51.93 -0.40 -0.22 16 51 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -34.95 381.15 -8.51 -43.46 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.16 Total: -0.19 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.46 Total: 1.77 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.35 Total: -60.09 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.04 Total: -8.60 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.95 -8.51 -43.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039208112.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.126 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds