Wall clock time and date at job start Wed Apr 1 2020 05:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36599 * 126.58210 * 2 1 4 4 C 1.47523 * 125.76968 * 0.04180 * 3 2 1 5 5 O 1.21598 * 119.99870 * 6.29132 * 4 3 2 6 6 N 1.34780 * 120.00008 * 186.29784 * 4 3 2 7 7 C 1.46960 * 120.65199 * 5.91206 * 6 4 3 8 8 C 1.53194 * 108.88478 * 233.53349 * 7 6 4 9 9 C 1.53046 * 109.31241 * 305.44258 * 8 7 6 10 10 C 1.53044 * 109.53730 * 61.36356 * 9 8 7 11 11 C 1.46926 * 120.62621 * 186.09071 * 6 4 3 12 12 H 1.09005 * 109.58169 * 246.32187 * 11 6 4 13 13 C 1.52996 * 109.58956 * 6.60472 * 11 6 4 14 14 H 1.09000 * 110.64216 * 40.63530 * 13 11 6 15 15 C 1.55160 * 110.72045 * 277.29426 * 13 11 6 16 16 C 1.55126 * 101.48345 * 205.97144 * 15 13 11 17 17 N 1.47424 * 104.72380 * 37.29494 * 16 15 13 18 18 C 1.36944 * 125.64669 * 155.81921 * 17 16 15 19 19 H 1.07994 * 119.99982 * 179.69780 * 18 17 16 20 20 C 1.38812 * 119.99859 * 359.69119 * 18 17 16 21 21 N 1.31621 * 120.00169 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00026 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46682 * 59.99802 * 22 20 18 24 24 H 1.48501 * 109.47238 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46875 * 300.00218 * 22 20 18 26 26 C 1.47018 * 108.70618 * 335.55201 * 17 16 15 27 27 N 1.34403 * 108.46092 * 179.77282 * 3 2 1 28 28 N 1.28768 * 109.52215 * 0.23297 * 27 3 2 29 29 N 1.34817 * 126.58230 * 180.16962 * 2 1 3 30 30 C 1.46502 * 126.59385 * 359.96511 * 29 2 1 31 31 H 1.09000 * 109.46825 * 89.99769 * 1 2 3 32 32 H 1.08995 * 109.47113 * 209.99551 * 1 2 3 33 33 H 1.08997 * 109.46711 * 329.99456 * 1 2 3 34 34 H 1.08991 * 109.46770 * 113.75208 * 7 6 4 35 35 H 1.09000 * 109.71511 * 353.45601 * 7 6 4 36 36 H 1.08999 * 109.49707 * 185.49762 * 8 7 6 37 37 H 1.08996 * 109.50096 * 65.39334 * 8 7 6 38 38 H 1.09004 * 109.45658 * 301.34957 * 9 8 7 39 39 H 1.08996 * 109.46120 * 181.38474 * 9 8 7 40 40 H 1.09001 * 109.49744 * 178.68371 * 10 9 8 41 41 H 1.09008 * 109.51926 * 58.60494 * 10 9 8 42 42 H 1.08994 * 111.00251 * 324.20871 * 15 13 11 43 43 H 1.08998 * 110.99835 * 88.02206 * 15 13 11 44 44 H 1.09003 * 110.49609 * 278.45222 * 16 15 13 45 45 H 1.09000 * 110.34019 * 156.06376 * 16 15 13 46 46 H 0.97001 * 120.00151 * 180.02562 * 21 20 18 47 47 H 1.08995 * 109.88269 * 120.69812 * 26 17 16 48 48 H 1.08990 * 109.88572 * 241.87447 * 26 17 16 49 49 H 1.08996 * 109.47151 * 270.27717 * 30 29 2 50 50 H 1.09003 * 109.46652 * 30.27429 * 30 29 2 51 51 H 1.08998 * 109.47210 * 150.27143 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0009 5 8 0.6921 2.7647 0.1171 6 7 2.7750 3.4967 -0.1273 7 6 4.1880 3.1966 -0.3978 8 6 5.0537 3.8952 0.6554 9 6 4.7207 5.3889 0.6746 10 6 3.2504 5.5807 1.0534 11 6 2.3642 4.9011 0.0048 12 1 2.4790 5.4070 -0.9539 13 6 0.9014 4.9682 0.4481 14 1 0.6929 4.2083 1.2012 15 6 -0.0487 4.8156 -0.7691 16 6 -1.3141 5.5603 -0.2684 17 7 -0.7950 6.7029 0.5051 18 6 -1.4633 7.8738 0.7450 19 1 -0.9961 8.6521 1.3301 20 6 -2.7412 8.0604 0.2361 21 7 -3.3103 7.1121 -0.4775 22 14 -3.6527 9.6579 0.5627 23 1 -2.8752 10.7940 0.0058 24 1 -4.9879 9.6075 -0.0854 25 1 -3.8191 9.8424 2.0268 26 6 0.5566 6.3746 0.9817 27 7 3.5984 0.6789 0.0051 28 7 3.6299 -0.6084 0.0033 29 7 2.3105 -1.0826 -0.0032 30 6 1.8865 -2.4849 -0.0066 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5137 33 1 -0.3633 0.8899 0.5139 34 1 4.4535 3.5620 -1.3897 35 1 4.3512 2.1200 -0.3491 36 1 6.1068 3.7605 0.4084 37 1 4.8516 3.4649 1.6362 38 1 4.8995 5.8135 -0.3133 39 1 5.3528 5.8925 1.4060 40 1 3.0199 6.6454 1.0897 41 1 3.0648 5.1347 2.0306 42 1 0.3684 5.2979 -1.6530 43 1 -0.2665 3.7658 -0.9654 44 1 -1.9119 4.9100 0.3704 45 1 -1.9061 5.9117 -1.1134 46 1 -4.2032 7.2426 -0.8335 47 1 1.2718 7.1022 0.5981 48 1 0.5750 6.3724 2.0714 49 1 1.7770 -2.8339 1.0201 50 1 0.9315 -2.5744 -0.5245 51 1 2.6352 -3.0896 -0.5182 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039208112.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:49 Heat of formation + Delta-G solvation = 107.193069 kcal Electronic energy + Delta-G solvation = -32583.886097 eV Core-core repulsion = 28521.980309 eV Total energy + Delta-G solvation = -4061.905789 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.36087 -41.55616 -38.75011 -38.24307 -35.99037 -34.85832 -33.77429 -33.27898 -32.47238 -30.83222 -29.17325 -28.68065 -28.30859 -26.83492 -25.77258 -24.39146 -23.83845 -22.44729 -22.01816 -21.29079 -20.91457 -20.43014 -18.82810 -18.28289 -17.44881 -17.23774 -16.89163 -16.65011 -16.26040 -16.00412 -15.62728 -15.58967 -15.07483 -14.88406 -14.61559 -14.43510 -14.25559 -14.15984 -14.04335 -13.95240 -13.89615 -13.60203 -13.47204 -13.21823 -13.18442 -12.91932 -12.82019 -12.68013 -12.45000 -12.23541 -12.04347 -11.97158 -11.78453 -11.67083 -11.49856 -11.22803 -11.10485 -11.06128 -10.84625 -10.70112 -10.12395 -10.03536 -9.41536 -8.82282 -7.71026 -5.17028 0.13350 0.60815 1.13997 1.45991 1.50724 1.56962 1.99929 2.26434 2.52797 3.14323 3.34709 3.39302 3.63958 3.66977 3.76632 3.83775 3.90050 4.08763 4.15639 4.24814 4.32546 4.33169 4.35170 4.42260 4.50731 4.59238 4.63779 4.65805 4.66772 4.74254 4.77812 4.80373 4.94233 4.97582 5.02456 5.07743 5.10510 5.16899 5.19849 5.29352 5.36902 5.44196 5.47504 5.50254 5.56726 5.61410 5.76163 5.88018 5.90147 6.35896 6.46933 6.89563 7.15293 7.29523 7.83900 8.50852 9.29798 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.003202 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.487684 B = 8742.695692 C =10483.812578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.130 3.870 3 C -0.123 4.123 4 C 0.583 3.417 5 O -0.530 6.530 6 N -0.591 5.591 7 C 0.068 3.932 8 C -0.122 4.122 9 C -0.115 4.115 10 C -0.128 4.128 11 C 0.167 3.833 12 H 0.068 0.932 13 C -0.070 4.070 14 H 0.085 0.915 15 C -0.111 4.111 16 C 0.162 3.838 17 N -0.628 5.628 18 C -0.241 4.241 19 H 0.080 0.920 20 C -0.071 4.071 21 N -0.950 5.950 22 Si 0.983 3.017 23 H -0.275 1.275 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.136 3.864 27 N -0.216 5.216 28 N -0.092 5.092 29 N -0.351 5.351 30 C 0.072 3.928 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.139 0.861 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.039 0.961 43 H 0.095 0.905 44 H -0.024 1.024 45 H 0.067 0.933 46 H 0.246 0.754 47 H 0.031 0.969 48 H 0.012 0.988 49 H 0.107 0.893 50 H 0.123 0.877 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.528 -20.769 -0.132 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.009 4.009 3 C -0.263 4.263 4 C 0.371 3.629 5 O -0.408 6.408 6 N -0.322 5.322 7 C -0.055 4.055 8 C -0.160 4.160 9 C -0.153 4.153 10 C -0.166 4.166 11 C 0.063 3.937 12 H 0.086 0.914 13 C -0.089 4.089 14 H 0.103 0.897 15 C -0.149 4.149 16 C 0.037 3.963 17 N -0.353 5.353 18 C -0.370 4.370 19 H 0.098 0.902 20 C -0.263 4.263 21 N -0.600 5.600 22 Si 0.811 3.189 23 H -0.201 1.201 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.010 3.990 27 N -0.088 5.088 28 N -0.070 5.070 29 N -0.138 5.138 30 C -0.066 4.066 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.155 0.845 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.113 0.887 44 H -0.006 1.006 45 H 0.085 0.915 46 H 0.055 0.945 47 H 0.049 0.951 48 H 0.030 0.970 49 H 0.125 0.875 50 H 0.142 0.858 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 17.228 -21.020 -0.108 27.178 hybrid contribution -1.753 1.121 0.230 2.093 sum 15.475 -19.899 0.122 25.208 Atomic orbital electron populations 1.20810 0.82928 1.06204 1.05520 1.22210 0.97134 0.85946 0.95616 1.21340 0.89481 0.95549 1.19896 1.17187 0.85365 0.83006 0.77388 1.90832 1.17084 1.82289 1.50557 1.47907 1.09600 1.05045 1.69676 1.22886 0.78130 1.05932 0.98540 1.21808 1.00329 0.95025 0.98856 1.21545 0.94555 0.96679 1.02501 1.22003 0.95788 1.00818 0.98002 1.21171 0.93028 0.80691 0.98768 0.91399 1.22321 0.93042 0.94798 0.98769 0.89746 1.23203 0.95688 1.00418 0.95548 1.21677 0.93541 0.86404 0.94700 1.44891 1.14257 1.14883 1.61318 1.19469 0.97467 0.92819 1.27214 0.90233 1.25699 0.98120 1.01718 1.00796 1.70115 1.14986 1.33974 1.40896 0.85081 0.77300 0.78892 0.77611 1.20107 1.21825 1.20495 1.21614 0.86496 0.95406 0.95481 1.74005 1.18951 1.04105 1.11774 1.81868 0.97885 1.03580 1.23695 1.50532 1.05189 1.09199 1.48858 1.22699 1.04127 0.73278 1.06520 0.87949 0.87232 0.89065 0.91496 0.84470 0.88696 0.92635 0.91220 0.90285 0.90520 0.92333 0.94240 0.88695 1.00619 0.91538 0.94471 0.95100 0.97043 0.87476 0.85848 0.86761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 9.45 71.24 0.67 -0.87 16 2 C 0.13 2.65 7.02 41.72 0.29 2.95 16 3 C -0.12 -3.26 6.75 40.82 0.28 -2.98 16 4 C 0.58 18.09 7.42 86.69 0.64 18.73 16 5 O -0.53 -18.94 7.64 -4.02 -0.03 -18.97 16 6 N -0.59 -17.04 2.98 -798.68 -2.38 -19.42 16 7 C 0.07 1.56 6.31 86.36 0.54 2.11 16 8 C -0.12 -2.38 6.08 30.67 0.19 -2.19 16 9 C -0.12 -2.33 5.88 30.62 0.18 -2.15 16 10 C -0.13 -3.43 4.71 30.67 0.14 -3.29 16 11 C 0.17 5.26 2.60 44.97 0.12 5.38 16 12 H 0.07 2.20 7.76 -2.38 -0.02 2.18 16 13 C -0.07 -2.81 1.92 -9.60 -0.02 -2.83 16 14 H 0.08 3.63 5.92 -2.66 -0.02 3.61 16 15 C -0.11 -4.94 5.79 32.06 0.19 -4.75 16 16 C 0.16 9.03 5.91 86.93 0.51 9.54 16 17 N -0.63 -35.68 3.39 -691.57 -2.35 -38.03 16 18 C -0.24 -14.47 10.27 84.03 0.86 -13.61 16 19 H 0.08 4.55 7.83 -2.91 -0.02 4.52 16 20 C -0.07 -4.28 5.49 84.86 0.47 -3.81 16 21 N -0.95 -60.05 10.08 21.65 0.22 -59.83 16 22 Si 0.98 47.81 29.55 68.60 2.03 49.84 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 26 C 0.14 6.23 5.85 86.73 0.51 6.74 16 27 N -0.22 -5.51 8.70 -49.99 -0.43 -5.95 16 28 N -0.09 -2.08 13.78 37.02 0.51 -1.57 16 29 N -0.35 -5.80 4.03 -355.09 -1.43 -7.24 16 30 C 0.07 0.34 11.17 127.77 1.43 1.77 16 31 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.11 0.93 7.84 -2.39 -0.02 0.91 16 33 H 0.09 2.09 6.32 -2.39 -0.02 2.08 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.14 3.29 3.67 -91.87 -0.34 2.95 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 2.13 6.45 -2.39 -0.02 2.11 16 41 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.04 1.74 7.78 -2.39 -0.02 1.72 16 43 H 0.10 4.12 5.47 -11.49 -0.06 4.05 16 44 H -0.02 -1.47 8.14 -2.39 -0.02 -1.49 16 45 H 0.07 4.14 5.86 -2.39 -0.01 4.13 16 46 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 47 H 0.03 1.36 6.48 -2.39 -0.02 1.34 16 48 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 50 H 0.12 -0.02 7.78 -2.39 -0.02 -0.04 16 51 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -79.09 381.15 3.70 -75.39 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.56 Total: 15.03 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 7.00 Total: 10.73 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -5.87 Total: -132.02 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.03 Total: -18.97 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -79.09 3.70 -75.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039208112.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.585 kcal (2) G-P(sol) polarization free energy of solvation -79.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds