Wall clock time and date at job start Wed Apr 1 2020 05:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30827 * 125.95797 * 2 1 4 4 C 1.33249 * 109.82844 * 180.02562 * 3 2 1 5 5 C 1.50694 * 125.52914 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46927 * 90.00000 * 5 4 3 7 7 O 1.21282 * 120.00082 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99718 * 180.02562 * 6 5 4 9 9 C 1.46922 * 120.63297 * 1.98892 * 8 6 5 10 10 C 1.53190 * 108.77565 * 126.41533 * 9 8 6 11 11 C 1.53043 * 109.31192 * 54.63857 * 10 9 8 12 12 C 1.53049 * 109.53498 * 298.63463 * 11 10 9 13 13 C 1.46922 * 120.62834 * 182.01875 * 8 6 5 14 14 H 1.08999 * 109.59030 * 113.79613 * 13 8 6 15 15 C 1.53002 * 109.70500 * 353.44088 * 13 8 6 16 16 H 1.09003 * 110.63803 * 55.22494 * 15 13 8 17 17 C 1.55159 * 110.72116 * 178.55771 * 15 13 8 18 18 C 1.54907 * 101.58030 * 153.86167 * 17 15 13 19 19 N 1.47422 * 104.83579 * 322.99582 * 18 17 15 20 20 C 1.36940 * 125.64773 * 204.09518 * 19 18 17 21 21 H 1.07998 * 119.99834 * 180.02562 * 20 19 18 22 22 C 1.38806 * 120.00061 * 0.03410 * 20 19 18 23 23 N 1.31620 * 120.00067 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00170 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47391 * 59.99608 * 24 22 20 26 26 H 1.48492 * 109.47448 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46916 * 300.00095 * 24 22 20 28 28 C 1.47019 * 108.70437 * 24.12562 * 19 18 17 29 29 N 1.30708 * 108.94374 * 0.26406 * 4 3 2 30 30 N 1.34426 * 125.96267 * 180.02562 * 2 1 3 31 31 H 0.96998 * 126.81983 * 359.97438 * 30 2 1 32 32 H 1.09000 * 109.47554 * 89.97142 * 1 2 3 33 33 H 1.08999 * 109.47283 * 209.97668 * 1 2 3 34 34 H 1.08998 * 109.47364 * 329.97445 * 1 2 3 35 35 H 1.09000 * 109.46911 * 330.00424 * 5 4 3 36 36 H 1.08995 * 109.47404 * 210.00372 * 5 4 3 37 37 H 1.09005 * 109.58997 * 6.63366 * 9 8 6 38 38 H 1.08996 * 109.59243 * 246.20732 * 9 8 6 39 39 H 1.09002 * 109.50045 * 294.69265 * 10 9 8 40 40 H 1.08998 * 109.50395 * 174.58737 * 10 9 8 41 41 H 1.09001 * 109.46256 * 58.65543 * 11 10 9 42 42 H 1.09001 * 109.46539 * 178.61666 * 11 10 9 43 43 H 1.09005 * 109.49427 * 181.31087 * 12 11 10 44 44 H 1.08993 * 109.49686 * 301.41503 * 12 11 10 45 45 H 1.08995 * 111.00326 * 271.93931 * 17 15 13 46 46 H 1.09003 * 111.00084 * 35.79582 * 17 15 13 47 47 H 1.08993 * 110.36787 * 204.15155 * 18 17 15 48 48 H 1.09008 * 110.45906 * 81.88077 * 18 17 15 49 49 H 0.96999 * 119.99939 * 180.02562 * 23 22 20 50 50 H 1.09007 * 109.88391 * 239.52855 * 28 19 18 51 51 H 1.08999 * 110.01705 * 118.43202 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6236 -0.0002 6 6 5.1315 1.9342 1.4208 7 8 4.5138 1.4443 2.3425 8 7 6.1705 2.7565 1.6674 9 6 6.9010 3.3919 0.5623 10 6 6.9343 4.9051 0.7988 11 6 7.5199 5.1881 2.1842 12 6 6.6313 4.5511 3.2552 13 6 6.5946 3.0339 3.0464 14 1 7.5881 2.6179 3.2140 15 6 5.6032 2.4051 4.0275 16 1 5.4919 1.3387 3.8307 17 6 6.0486 2.6532 5.4929 18 6 4.6953 2.5909 6.2441 19 7 3.7271 3.2248 5.3308 20 6 2.5479 3.8140 5.7017 21 1 1.9044 4.2523 4.9532 22 6 2.1797 3.8481 7.0396 23 7 2.9642 3.3145 7.9519 24 14 0.5708 4.6512 7.5454 25 1 -0.5602 3.9562 6.8797 26 1 0.4121 4.5567 9.0188 27 1 0.5816 6.0797 7.1398 28 6 4.2369 3.1190 3.9559 29 7 3.6194 -0.6167 -0.0066 30 7 2.2964 -1.0880 -0.0005 31 1 2.0093 -2.0146 -0.0006 32 1 -0.3634 0.0005 -1.0276 33 1 -0.3634 -0.8902 0.5135 34 1 -0.3634 0.8897 0.5142 35 1 4.4699 2.5474 -0.5133 36 1 5.5741 1.1514 -0.5146 37 1 6.3949 3.1804 -0.3797 38 1 7.9194 3.0051 0.5271 39 1 5.9215 5.3043 0.7435 40 1 7.5547 5.3788 0.0380 41 1 8.5233 4.7669 2.2473 42 1 7.5675 6.2650 2.3453 43 1 7.0362 4.7728 4.2427 44 1 5.6215 4.9537 3.1767 45 1 6.7219 1.8673 5.8350 46 1 6.5100 3.6350 5.6001 47 1 4.7547 3.1470 7.1796 48 1 4.4136 1.5555 6.4364 49 1 2.7067 3.3380 8.8867 50 1 4.3606 4.1143 3.5288 51 1 3.5461 2.5372 3.3456 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039221790.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:38 Heat of formation + Delta-G solvation = 109.583143 kcal Electronic energy + Delta-G solvation = -32653.108673 eV Core-core repulsion = 28591.306526 eV Total energy + Delta-G solvation = -4061.802147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.15885 -40.59538 -37.41349 -36.70762 -33.85086 -32.94797 -32.68848 -32.36888 -30.93762 -29.76900 -28.82142 -27.80688 -26.89010 -25.07716 -24.17055 -23.08121 -21.78313 -21.11212 -20.55945 -20.00515 -19.42737 -18.26057 -17.89670 -16.95633 -16.36160 -15.79019 -15.48792 -15.35774 -15.01477 -14.53742 -14.43921 -14.36371 -13.89178 -13.79090 -13.57195 -13.27136 -13.15638 -12.94839 -12.81096 -12.76336 -12.50149 -12.06788 -11.85414 -11.65229 -11.52411 -11.49939 -11.12257 -10.93847 -10.76189 -10.67325 -10.60634 -10.34121 -10.11774 -10.00902 -9.97180 -9.83218 -9.68089 -9.47712 -9.44436 -9.28284 -8.64526 -8.37265 -8.15831 -6.49473 -5.43702 -2.81865 1.56666 2.57106 2.74080 2.88216 3.26645 3.51458 3.54662 3.56787 3.91309 4.45918 4.60131 4.67886 4.69799 4.77216 4.88083 5.00603 5.10412 5.19964 5.21006 5.24679 5.36211 5.37534 5.52127 5.55430 5.62372 5.66113 5.69944 5.75952 5.91687 5.94390 5.96664 6.00872 6.16862 6.19939 6.22695 6.32185 6.38704 6.49438 6.56314 6.65886 6.80200 6.98323 7.00618 7.07082 7.29683 7.55156 7.62711 7.77739 7.85900 8.08310 8.09826 8.52784 8.62306 9.45767 10.08438 10.76852 11.60145 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007534 B = 0.004629 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3715.374641 B = 6046.747225 C = 8679.759731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.286 3.714 3 N -0.527 5.527 4 C 0.254 3.746 5 C -0.047 4.047 6 C 0.503 3.497 7 O -0.485 6.485 8 N -0.609 5.609 9 C 0.108 3.892 10 C -0.136 4.136 11 C -0.118 4.118 12 C -0.140 4.140 13 C 0.163 3.837 14 H 0.067 0.933 15 C -0.093 4.093 16 H 0.100 0.900 17 C -0.150 4.150 18 C 0.157 3.843 19 N -0.605 5.605 20 C -0.208 4.208 21 H 0.072 0.928 22 C -0.018 4.018 23 N -0.926 5.926 24 Si 0.910 3.090 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.287 1.287 28 C 0.144 3.856 29 N -0.308 5.308 30 N -0.483 5.483 31 H 0.438 0.562 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.101 0.899 48 H 0.005 0.995 49 H 0.249 0.751 50 H 0.014 0.986 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.570 -3.939 -21.058 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.007 3.993 3 N -0.256 5.256 4 C -0.030 4.030 5 C -0.090 4.090 6 C 0.289 3.711 7 O -0.359 6.359 8 N -0.344 5.344 9 C -0.015 4.015 10 C -0.174 4.174 11 C -0.156 4.156 12 C -0.178 4.178 13 C 0.061 3.939 14 H 0.085 0.915 15 C -0.112 4.112 16 H 0.118 0.882 17 C -0.189 4.189 18 C 0.032 3.968 19 N -0.330 5.330 20 C -0.337 4.337 21 H 0.090 0.910 22 C -0.212 4.212 23 N -0.576 5.576 24 Si 0.741 3.259 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.214 1.214 28 C 0.019 3.981 29 N -0.137 5.137 30 N -0.201 5.201 31 H 0.283 0.717 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.119 0.881 48 H 0.023 0.977 49 H 0.059 0.941 50 H 0.031 0.969 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.674 -4.188 -20.386 21.856 hybrid contribution -1.140 -0.221 0.269 1.192 sum 5.534 -4.408 -20.117 21.325 Atomic orbital electron populations 1.20397 0.83719 1.05399 1.04196 1.24343 0.96597 0.82723 0.95617 1.70315 1.01248 1.29480 1.24604 1.23240 0.92656 0.89657 0.97414 1.19958 0.93417 0.98370 0.97246 1.20057 0.80193 0.80642 0.90175 1.90827 1.51070 1.50296 1.43737 1.47986 1.32327 1.46914 1.07199 1.21716 0.96952 0.93182 0.89651 1.21924 1.02148 0.95482 0.97833 1.21525 0.98898 1.00662 0.94504 1.22189 1.01673 0.95027 0.98924 1.21239 0.97743 0.95053 0.79883 0.91547 1.22653 0.94445 1.01554 0.92519 0.88213 1.23221 1.00021 0.99625 0.96028 1.21806 0.83740 0.96090 0.95118 1.44548 1.20901 1.66523 1.01047 1.19039 0.95082 1.27825 0.91731 0.90979 1.24732 0.98835 1.01855 0.95801 1.69810 1.36807 1.50796 1.00217 0.86209 0.83440 0.79065 0.77186 1.21487 1.21734 1.21384 1.21876 0.92944 0.95320 0.87929 1.77919 0.96769 1.12225 1.26781 1.47900 1.04264 1.09922 1.58056 0.71670 0.89170 0.89880 0.88087 0.86593 0.87072 0.90033 0.91461 0.91244 0.91067 0.92223 0.91899 0.90474 0.89884 0.93082 0.92410 0.88100 0.97712 0.94059 0.96867 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.51 36.01 0.38 -0.24 16 2 C 0.29 3.62 8.24 -155.70 -1.28 2.33 16 3 N -0.53 -8.40 11.19 -8.16 -0.09 -8.49 16 4 C 0.25 3.90 6.63 -156.85 -1.04 2.86 16 5 C -0.05 -0.59 4.69 -29.03 -0.14 -0.72 16 6 C 0.50 7.92 7.25 -10.98 -0.08 7.84 16 7 O -0.49 -10.00 9.01 5.56 0.05 -9.95 16 8 N -0.61 -8.20 2.95 -165.22 -0.49 -8.69 16 9 C 0.11 0.98 6.34 -3.71 -0.02 0.95 16 10 C -0.14 -1.23 6.08 -26.61 -0.16 -1.39 16 11 C -0.12 -1.26 5.88 -26.68 -0.16 -1.41 16 12 C -0.14 -2.04 4.78 -26.61 -0.13 -2.17 16 13 C 0.16 2.52 2.77 -67.60 -0.19 2.33 16 14 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 15 C -0.09 -1.88 2.08 -88.78 -0.18 -2.06 16 16 H 0.10 2.23 5.99 -52.01 -0.31 1.92 16 17 C -0.15 -3.16 6.43 -24.58 -0.16 -3.32 16 18 C 0.16 4.25 5.89 -2.53 -0.01 4.24 16 19 N -0.60 -17.18 3.39 -170.08 -0.58 -17.76 16 20 C -0.21 -6.32 10.27 -15.06 -0.15 -6.47 16 21 H 0.07 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.02 -0.54 5.49 -17.43 -0.10 -0.63 16 23 N -0.93 -28.84 10.09 55.49 0.56 -28.28 16 24 Si 0.91 23.49 29.55 -169.99 -5.02 18.47 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 C 0.14 3.47 5.54 -3.07 -0.02 3.46 16 29 N -0.31 -4.66 12.80 32.42 0.41 -4.25 16 30 N -0.48 -5.80 7.45 32.62 0.24 -5.56 16 31 H 0.44 3.48 8.96 -182.34 -1.63 1.85 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.12 1.19 7.61 -51.93 -0.39 0.79 16 36 H 0.11 1.04 8.02 -51.93 -0.42 0.62 16 37 H 0.08 0.56 5.94 -51.93 -0.31 0.25 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.17 6.49 -51.93 -0.34 0.83 16 44 H 0.08 1.45 5.58 -51.93 -0.29 1.16 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.06 1.16 6.14 -51.93 -0.32 0.84 16 47 H 0.10 2.99 5.87 -51.93 -0.30 2.68 16 48 H 0.00 0.14 8.14 -51.92 -0.42 -0.28 16 49 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 50 H 0.01 0.33 5.22 -51.92 -0.27 0.06 16 51 H 0.05 1.33 5.58 -52.20 -0.29 1.04 16 LS Contribution 383.72 15.07 5.78 5.78 Total: -1.00 -39.25 383.72 -11.65 -50.90 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -9.07 Total: 2.23 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -3.44 Total: 5.59 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: 0.06 Total: -73.02 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.05 Total: -9.95 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.47 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.25 -11.65 -50.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039221790.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.481 kcal (2) G-P(sol) polarization free energy of solvation -39.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds