Wall clock time and date at job start Wed Apr 1 2020 05:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30827 * 125.95797 * 2 1 4 4 C 1.33249 * 109.82844 * 180.02562 * 3 2 1 5 5 C 1.50694 * 125.52914 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46927 * 90.00000 * 5 4 3 7 7 O 1.21282 * 120.00082 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99718 * 180.02562 * 6 5 4 9 9 C 1.46922 * 120.63297 * 1.98892 * 8 6 5 10 10 C 1.53190 * 108.77565 * 126.41533 * 9 8 6 11 11 C 1.53043 * 109.31192 * 54.63857 * 10 9 8 12 12 C 1.53049 * 109.53498 * 298.63463 * 11 10 9 13 13 C 1.46922 * 120.62834 * 182.01875 * 8 6 5 14 14 H 1.08999 * 109.59030 * 113.79613 * 13 8 6 15 15 C 1.53002 * 109.70500 * 353.44088 * 13 8 6 16 16 H 1.09003 * 110.63803 * 55.22494 * 15 13 8 17 17 C 1.55159 * 110.72116 * 178.55771 * 15 13 8 18 18 C 1.54907 * 101.58030 * 153.86167 * 17 15 13 19 19 N 1.47422 * 104.83579 * 322.99582 * 18 17 15 20 20 C 1.36940 * 125.64773 * 204.09518 * 19 18 17 21 21 H 1.07998 * 119.99834 * 180.02562 * 20 19 18 22 22 C 1.38806 * 120.00061 * 0.03410 * 20 19 18 23 23 N 1.31620 * 120.00067 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00170 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47391 * 59.99608 * 24 22 20 26 26 H 1.48492 * 109.47448 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46916 * 300.00095 * 24 22 20 28 28 C 1.47019 * 108.70437 * 24.12562 * 19 18 17 29 29 N 1.30708 * 108.94374 * 0.26406 * 4 3 2 30 30 N 1.34426 * 125.96267 * 180.02562 * 2 1 3 31 31 H 0.96998 * 126.81983 * 359.97438 * 30 2 1 32 32 H 1.09000 * 109.47554 * 89.97142 * 1 2 3 33 33 H 1.08999 * 109.47283 * 209.97668 * 1 2 3 34 34 H 1.08998 * 109.47364 * 329.97445 * 1 2 3 35 35 H 1.09000 * 109.46911 * 330.00424 * 5 4 3 36 36 H 1.08995 * 109.47404 * 210.00372 * 5 4 3 37 37 H 1.09005 * 109.58997 * 6.63366 * 9 8 6 38 38 H 1.08996 * 109.59243 * 246.20732 * 9 8 6 39 39 H 1.09002 * 109.50045 * 294.69265 * 10 9 8 40 40 H 1.08998 * 109.50395 * 174.58737 * 10 9 8 41 41 H 1.09001 * 109.46256 * 58.65543 * 11 10 9 42 42 H 1.09001 * 109.46539 * 178.61666 * 11 10 9 43 43 H 1.09005 * 109.49427 * 181.31087 * 12 11 10 44 44 H 1.08993 * 109.49686 * 301.41503 * 12 11 10 45 45 H 1.08995 * 111.00326 * 271.93931 * 17 15 13 46 46 H 1.09003 * 111.00084 * 35.79582 * 17 15 13 47 47 H 1.08993 * 110.36787 * 204.15155 * 18 17 15 48 48 H 1.09008 * 110.45906 * 81.88077 * 18 17 15 49 49 H 0.96999 * 119.99939 * 180.02562 * 23 22 20 50 50 H 1.09007 * 109.88391 * 239.52855 * 28 19 18 51 51 H 1.08999 * 110.01705 * 118.43202 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6236 -0.0002 6 6 5.1315 1.9342 1.4208 7 8 4.5138 1.4443 2.3425 8 7 6.1705 2.7565 1.6674 9 6 6.9010 3.3919 0.5623 10 6 6.9343 4.9051 0.7988 11 6 7.5199 5.1881 2.1842 12 6 6.6313 4.5511 3.2552 13 6 6.5946 3.0339 3.0464 14 1 7.5881 2.6179 3.2140 15 6 5.6032 2.4051 4.0275 16 1 5.4919 1.3387 3.8307 17 6 6.0486 2.6532 5.4929 18 6 4.6953 2.5909 6.2441 19 7 3.7271 3.2248 5.3308 20 6 2.5479 3.8140 5.7017 21 1 1.9044 4.2523 4.9532 22 6 2.1797 3.8481 7.0396 23 7 2.9642 3.3145 7.9519 24 14 0.5708 4.6512 7.5454 25 1 -0.5602 3.9562 6.8797 26 1 0.4121 4.5567 9.0188 27 1 0.5816 6.0797 7.1398 28 6 4.2369 3.1190 3.9559 29 7 3.6194 -0.6167 -0.0066 30 7 2.2964 -1.0880 -0.0005 31 1 2.0093 -2.0146 -0.0006 32 1 -0.3634 0.0005 -1.0276 33 1 -0.3634 -0.8902 0.5135 34 1 -0.3634 0.8897 0.5142 35 1 4.4699 2.5474 -0.5133 36 1 5.5741 1.1514 -0.5146 37 1 6.3949 3.1804 -0.3797 38 1 7.9194 3.0051 0.5271 39 1 5.9215 5.3043 0.7435 40 1 7.5547 5.3788 0.0380 41 1 8.5233 4.7669 2.2473 42 1 7.5675 6.2650 2.3453 43 1 7.0362 4.7728 4.2427 44 1 5.6215 4.9537 3.1767 45 1 6.7219 1.8673 5.8350 46 1 6.5100 3.6350 5.6001 47 1 4.7547 3.1470 7.1796 48 1 4.4136 1.5555 6.4364 49 1 2.7067 3.3380 8.8867 50 1 4.3606 4.1143 3.5288 51 1 3.5461 2.5372 3.3456 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039221790.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:37 Heat of formation + Delta-G solvation = 82.082010 kcal Electronic energy + Delta-G solvation = -32654.301212 eV Core-core repulsion = 28591.306526 eV Total energy + Delta-G solvation = -4062.994686 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.17075 -41.83806 -38.90169 -38.13147 -35.20277 -34.48114 -33.77197 -33.35233 -32.61253 -30.93504 -30.52274 -28.79004 -28.49773 -26.83769 -25.52002 -24.40166 -22.90344 -22.15090 -22.06020 -21.57108 -20.78025 -19.52645 -18.96167 -18.83738 -17.70135 -17.02396 -16.95325 -16.51803 -16.47476 -16.27301 -15.68519 -15.48197 -15.23165 -14.90907 -14.75172 -14.50720 -14.21527 -14.13088 -13.93483 -13.66734 -13.61999 -13.51444 -13.40950 -13.12666 -13.01098 -12.86761 -12.76248 -12.67615 -12.25824 -12.04726 -12.00992 -11.86979 -11.59956 -11.48264 -11.38817 -11.31354 -11.15696 -11.09970 -11.05814 -10.72024 -10.51721 -9.91448 -9.39248 -8.74962 -7.75844 -5.18941 0.56386 1.40213 1.45563 1.52167 1.63614 1.73512 1.74498 2.23649 2.49409 3.02591 3.30769 3.52198 3.57109 3.79554 3.86104 3.93017 3.98398 4.05096 4.11214 4.22767 4.33588 4.35182 4.37971 4.39265 4.44452 4.63057 4.66121 4.72738 4.73456 4.79915 4.83588 4.91344 5.01391 5.03799 5.07057 5.16742 5.20760 5.24433 5.29123 5.33207 5.38297 5.38727 5.41908 5.59038 5.64713 5.69270 5.77959 5.86527 6.19545 6.31287 6.55543 7.08352 7.12316 7.37828 7.82684 8.49478 9.25994 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007534 B = 0.004629 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3715.374641 B = 6046.747225 C = 8679.759731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.283 3.717 3 N -0.572 5.572 4 C 0.238 3.762 5 C -0.041 4.041 6 C 0.497 3.503 7 O -0.546 6.546 8 N -0.605 5.605 9 C 0.101 3.899 10 C -0.133 4.133 11 C -0.112 4.112 12 C -0.136 4.136 13 C 0.169 3.831 14 H 0.093 0.907 15 C -0.075 4.075 16 H 0.078 0.922 17 C -0.134 4.134 18 C 0.160 3.840 19 N -0.626 5.626 20 C -0.237 4.237 21 H 0.068 0.932 22 C -0.071 4.071 23 N -0.951 5.951 24 Si 0.982 3.018 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.274 1.274 28 C 0.153 3.847 29 N -0.335 5.335 30 N -0.476 5.476 31 H 0.454 0.546 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.073 0.927 48 H -0.034 1.034 49 H 0.246 0.754 50 H 0.015 0.985 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.977 -3.206 -23.663 25.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.005 3.995 3 N -0.302 5.302 4 C -0.045 4.045 5 C -0.082 4.082 6 C 0.285 3.715 7 O -0.425 6.425 8 N -0.338 5.338 9 C -0.020 4.020 10 C -0.171 4.171 11 C -0.150 4.150 12 C -0.174 4.174 13 C 0.066 3.934 14 H 0.111 0.889 15 C -0.094 4.094 16 H 0.096 0.904 17 C -0.173 4.173 18 C 0.035 3.965 19 N -0.352 5.352 20 C -0.366 4.366 21 H 0.086 0.914 22 C -0.263 4.263 23 N -0.602 5.602 24 Si 0.809 3.191 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.199 1.199 28 C 0.029 3.971 29 N -0.165 5.165 30 N -0.196 5.196 31 H 0.302 0.698 32 H 0.138 0.862 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.090 0.910 48 H -0.016 1.016 49 H 0.056 0.944 50 H 0.033 0.967 51 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 8.115 -3.453 -23.050 24.680 hybrid contribution -1.633 -0.494 1.063 2.010 sum 6.481 -3.947 -21.987 23.260 Atomic orbital electron populations 1.20613 0.80623 1.05921 1.06249 1.25135 0.98201 0.82238 0.93930 1.70309 1.02088 1.31336 1.26455 1.23772 0.93376 0.90151 0.97231 1.20075 0.93745 0.99225 0.95191 1.20695 0.79832 0.79899 0.91050 1.90808 1.53108 1.52812 1.45724 1.48101 1.31902 1.46249 1.07572 1.22144 0.98177 0.92811 0.88905 1.21934 1.01733 0.95629 0.97757 1.21508 0.98940 1.00718 0.93816 1.22095 1.00528 0.94444 1.00308 1.21085 0.96997 0.95284 0.80067 0.88905 1.22395 0.93445 1.00295 0.93295 0.90390 1.23076 0.97007 1.01327 0.95918 1.21610 0.86826 0.93091 0.94971 1.44902 1.20895 1.66321 1.03077 1.19367 0.96312 1.28674 0.92255 0.91371 1.25655 1.02610 1.02439 0.95551 1.70078 1.38402 1.51485 1.00208 0.85103 0.78828 0.78469 0.76665 1.20805 1.21321 1.19937 1.21877 0.94509 0.95302 0.85400 1.77800 0.98502 1.12456 1.27717 1.47840 1.03431 1.10806 1.57514 0.69799 0.86211 0.87443 0.89356 0.84408 0.83604 0.87342 0.88623 0.93091 0.87533 0.89977 0.91383 0.91383 0.93528 0.90673 0.90967 0.90950 1.01594 0.94394 0.96737 0.96074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.51 71.24 0.75 -0.36 16 2 C 0.28 7.15 8.24 138.23 1.14 8.29 16 3 N -0.57 -18.50 11.19 -179.74 -2.01 -20.51 16 4 C 0.24 7.32 6.63 138.63 0.92 8.24 16 5 C -0.04 -0.94 4.69 29.10 0.14 -0.81 16 6 C 0.50 15.47 7.25 87.66 0.64 16.10 16 7 O -0.55 -23.49 9.01 -3.04 -0.03 -23.52 16 8 N -0.60 -15.12 2.95 -795.03 -2.35 -17.47 16 9 C 0.10 1.38 6.34 86.36 0.55 1.93 16 10 C -0.13 -1.88 6.08 30.67 0.19 -1.69 16 11 C -0.11 -2.01 5.88 30.63 0.18 -1.83 16 12 C -0.14 -3.79 4.78 30.67 0.15 -3.65 16 13 C 0.17 4.97 2.77 44.98 0.12 5.10 16 14 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 15 C -0.08 -3.12 2.08 -9.60 -0.02 -3.14 16 16 H 0.08 3.64 5.99 -4.84 -0.03 3.61 16 17 C -0.13 -5.79 6.43 31.99 0.21 -5.58 16 18 C 0.16 9.17 5.89 86.85 0.51 9.68 16 19 N -0.63 -37.62 3.39 -692.00 -2.35 -39.97 16 20 C -0.24 -15.08 10.27 84.03 0.86 -14.21 16 21 H 0.07 4.25 7.83 -2.91 -0.02 4.23 16 22 C -0.07 -4.40 5.49 84.86 0.47 -3.94 16 23 N -0.95 -61.65 10.09 21.65 0.22 -61.43 16 24 Si 0.98 49.49 29.55 68.60 2.03 51.52 16 25 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 26 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 27 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 28 C 0.15 7.79 5.54 86.73 0.48 8.27 16 29 N -0.34 -10.16 12.80 -51.34 -0.66 -10.82 16 30 N -0.48 -11.35 7.45 -50.71 -0.38 -11.73 16 31 H 0.45 6.99 8.96 -213.10 -1.91 5.08 16 32 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.14 2.53 7.61 -2.39 -0.02 2.51 16 36 H 0.15 2.28 8.02 -2.39 -0.02 2.26 16 37 H 0.11 0.95 5.94 -2.38 -0.01 0.94 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 2.00 6.49 -2.38 -0.02 1.98 16 44 H 0.05 1.64 5.58 -2.39 -0.01 1.63 16 45 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 46 H 0.07 2.90 6.14 -2.39 -0.01 2.88 16 47 H 0.07 4.54 5.87 -2.39 -0.01 4.52 16 48 H -0.03 -2.14 8.14 -2.38 -0.02 -2.16 16 49 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 50 H 0.02 0.75 5.22 -2.38 -0.01 0.74 16 51 H 0.02 1.24 5.58 -7.68 -0.04 1.20 16 Total: -1.00 -93.66 383.72 0.76 -92.90 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -0.99 Total: 18.63 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 7.27 Total: 22.39 kcal Atomic # 7 Polarization: -154.39 SS G_CDS: -7.53 Total: -161.92 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.03 Total: -23.52 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.03 Total: 51.52 kcal Total: -93.66 0.76 -92.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039221790.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.983 kcal (2) G-P(sol) polarization free energy of solvation -93.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds