Wall clock time and date at job start Wed Apr 1 2020 05:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30837 * 125.95807 * 2 1 4 4 C 1.33244 * 109.82469 * 180.02562 * 3 2 1 5 5 C 1.50695 * 125.52311 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.47321 * 90.00200 * 5 4 3 7 7 O 1.21276 * 119.99632 * 359.97438 * 6 5 4 8 8 N 1.34768 * 119.99887 * 180.27765 * 6 5 4 9 9 C 1.46933 * 120.63520 * 355.02202 * 8 6 5 10 10 C 1.53197 * 108.77366 * 126.37161 * 9 8 6 11 11 C 1.53039 * 109.31288 * 54.64136 * 10 9 8 12 12 C 1.53044 * 109.53562 * 298.63340 * 11 10 9 13 13 C 1.46923 * 120.63131 * 174.74889 * 8 6 5 14 14 H 1.09006 * 109.59360 * 113.83675 * 13 8 6 15 15 C 1.53004 * 109.58394 * 353.41658 * 13 8 6 16 16 H 1.09002 * 110.88547 * 319.48373 * 15 13 8 17 17 C 1.55161 * 111.00235 * 195.56501 * 15 13 8 18 18 C 1.54324 * 102.94021 * 206.42086 * 17 15 13 19 19 N 1.47028 * 107.26983 * 22.19174 * 18 17 15 20 20 C 1.36933 * 125.64553 * 181.09253 * 19 18 17 21 21 H 1.07999 * 119.99784 * 179.97438 * 20 19 18 22 22 C 1.38816 * 120.00428 * 359.96139 * 20 19 18 23 23 N 1.31615 * 119.99671 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00262 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47572 * 59.99727 * 24 22 20 26 26 H 1.48494 * 109.47221 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46993 * 299.99512 * 24 22 20 28 28 C 1.47415 * 108.70480 * 1.05850 * 19 18 17 29 29 N 1.30706 * 108.94636 * 0.26516 * 4 3 2 30 30 N 1.34427 * 125.96199 * 180.02562 * 2 1 3 31 31 H 0.96992 * 126.82256 * 359.97438 * 30 2 1 32 32 H 1.09005 * 109.46970 * 89.97815 * 1 2 3 33 33 H 1.08994 * 109.47281 * 209.97400 * 1 2 3 34 34 H 1.08999 * 109.47385 * 329.97757 * 1 2 3 35 35 H 1.09003 * 109.47337 * 330.00133 * 5 4 3 36 36 H 1.09002 * 109.47254 * 210.00175 * 5 4 3 37 37 H 1.08998 * 109.58898 * 246.16177 * 9 8 6 38 38 H 1.09003 * 109.57978 * 6.58668 * 9 8 6 39 39 H 1.09003 * 109.49249 * 174.59276 * 10 9 8 40 40 H 1.08993 * 109.49817 * 294.68448 * 10 9 8 41 41 H 1.09003 * 109.45825 * 58.64773 * 11 10 9 42 42 H 1.08997 * 109.46035 * 178.61498 * 11 10 9 43 43 H 1.08999 * 109.49514 * 181.31709 * 12 11 10 44 44 H 1.09005 * 109.49875 * 301.37857 * 12 11 10 45 45 H 1.08998 * 110.72295 * 324.78177 * 17 15 13 46 46 H 1.08996 * 110.72298 * 88.06250 * 17 15 13 47 47 H 1.08998 * 109.88353 * 262.77674 * 18 17 15 48 48 H 1.09006 * 109.88247 * 141.60669 * 18 17 15 49 49 H 0.97004 * 120.00082 * 179.97438 * 23 22 20 50 50 H 1.08994 * 110.37348 * 217.02863 * 28 19 18 51 51 H 1.09009 * 110.45961 * 94.75469 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0591 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7371 1.6237 -0.0002 6 6 5.1315 1.9343 1.4208 7 8 4.5134 1.4451 2.3424 8 7 6.1673 2.7606 1.6673 9 6 6.9894 3.2799 0.5658 10 6 7.0369 4.8080 0.6640 11 6 7.5260 5.2107 2.0571 12 6 6.5489 4.6889 3.1132 13 6 6.4923 3.1640 3.0422 14 1 7.4609 2.7517 3.3248 15 6 5.4137 2.6477 3.9967 16 1 4.4218 2.7581 3.5584 17 6 5.4983 3.3633 5.3708 18 6 4.8923 2.3254 6.3389 19 7 5.0124 1.0079 5.6973 20 6 4.5729 -0.1781 6.2219 21 1 4.7085 -1.0961 5.6694 22 6 3.9532 -0.2007 7.4638 23 7 3.7886 0.9180 8.1374 24 14 3.3543 -1.8187 8.1796 25 1 4.5031 -2.7468 8.3351 26 1 2.7325 -1.5734 9.5056 27 1 2.3503 -2.4223 7.2669 28 6 5.6837 1.1754 4.3956 29 7 3.6194 -0.6167 -0.0066 30 7 2.2964 -1.0881 -0.0005 31 1 2.0094 -2.0145 -0.0006 32 1 -0.3633 0.0004 -1.0277 33 1 -0.3633 -0.8902 0.5134 34 1 -0.3634 0.8898 0.5142 35 1 4.4699 2.5475 -0.5133 36 1 5.5741 1.1514 -0.5146 37 1 7.9994 2.8772 0.6422 38 1 6.5488 2.9885 -0.3877 39 1 7.7208 5.1998 -0.0890 40 1 6.0395 5.2145 0.4970 41 1 8.5131 4.7831 2.2330 42 1 7.5842 6.2972 2.1215 43 1 6.8853 4.9960 4.1034 44 1 5.5561 5.0970 2.9235 45 1 6.5350 3.5751 5.6322 46 1 4.9059 4.2782 5.3663 47 1 3.8423 2.5555 6.5192 48 1 5.4423 2.3309 7.2800 49 1 3.3553 0.9024 9.0052 50 1 5.2548 0.4977 3.6575 51 1 6.7550 0.9994 4.4938 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039221791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:43 Heat of formation + Delta-G solvation = 101.007885 kcal Electronic energy + Delta-G solvation = -32450.877019 eV Core-core repulsion = 28388.703021 eV Total energy + Delta-G solvation = -4062.173998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.13498 -40.52079 -37.38455 -36.80268 -33.84308 -32.97901 -32.72995 -32.35255 -31.03255 -29.83892 -28.65893 -27.84606 -27.12675 -25.12877 -23.96939 -23.03469 -21.81809 -21.16344 -20.36285 -19.58382 -19.55075 -18.89513 -17.87365 -17.13417 -16.28596 -16.00883 -15.47177 -15.23607 -14.82348 -14.53630 -14.40954 -14.10960 -13.98435 -13.74818 -13.64990 -13.25153 -13.20238 -13.13016 -12.84576 -12.76950 -12.28665 -12.13685 -11.93601 -11.83312 -11.62568 -11.57125 -11.21237 -11.03465 -10.83423 -10.73811 -10.63469 -10.43303 -10.09962 -10.00355 -9.94499 -9.82261 -9.67137 -9.46796 -9.40618 -9.36234 -8.67004 -8.34310 -8.25180 -6.51450 -5.48796 -2.78372 1.60067 2.60294 2.74419 2.87581 3.25289 3.51934 3.54784 3.57109 3.91370 4.47429 4.57111 4.66578 4.69872 4.73959 4.79183 4.92641 5.08010 5.10644 5.19628 5.24074 5.29579 5.32881 5.47403 5.56497 5.62723 5.64339 5.66527 5.72299 5.79536 5.87579 5.95083 5.99582 6.04876 6.10638 6.23330 6.27347 6.36409 6.41416 6.45184 6.61276 6.74269 6.83103 7.03451 7.03850 7.28227 7.50370 7.60428 7.79081 7.88793 8.04474 8.11020 8.49895 8.58375 9.47103 10.08973 10.78032 11.63523 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007057 B = 0.004848 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3966.508645 B = 5773.736495 C = 9021.665127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.284 3.716 3 N -0.531 5.531 4 C 0.251 3.749 5 C -0.047 4.047 6 C 0.502 3.498 7 O -0.479 6.479 8 N -0.610 5.610 9 C 0.107 3.893 10 C -0.135 4.135 11 C -0.120 4.120 12 C -0.129 4.129 13 C 0.161 3.839 14 H 0.068 0.932 15 C -0.092 4.092 16 H 0.101 0.899 17 C -0.145 4.145 18 C 0.181 3.819 19 N -0.604 5.604 20 C -0.211 4.211 21 H 0.072 0.928 22 C -0.015 4.015 23 N -0.927 5.927 24 Si 0.908 3.092 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.288 1.288 28 C 0.149 3.851 29 N -0.303 5.303 30 N -0.481 5.481 31 H 0.439 0.561 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.040 0.960 48 H 0.036 0.964 49 H 0.249 0.751 50 H 0.066 0.934 51 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 6.563 -22.674 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.006 3.994 3 N -0.260 5.260 4 C -0.032 4.032 5 C -0.090 4.090 6 C 0.288 3.712 7 O -0.353 6.353 8 N -0.346 5.346 9 C -0.016 4.016 10 C -0.173 4.173 11 C -0.158 4.158 12 C -0.167 4.167 13 C 0.059 3.941 14 H 0.086 0.914 15 C -0.111 4.111 16 H 0.119 0.881 17 C -0.183 4.183 18 C 0.057 3.943 19 N -0.329 5.329 20 C -0.340 4.340 21 H 0.090 0.910 22 C -0.210 4.210 23 N -0.576 5.576 24 Si 0.739 3.261 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.215 1.215 28 C 0.023 3.977 29 N -0.132 5.132 30 N -0.199 5.199 31 H 0.284 0.716 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.055 0.945 49 H 0.059 0.941 50 H 0.084 0.916 51 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 2.039 6.180 -21.974 22.918 hybrid contribution -0.555 -1.451 0.486 1.628 sum 1.485 4.729 -21.488 22.053 Atomic orbital electron populations 1.20383 0.83774 1.05318 1.04142 1.24314 0.96553 0.82796 0.95765 1.70273 1.01255 1.29532 1.24959 1.23222 0.92600 0.89716 0.97662 1.19962 0.93421 0.98349 0.97252 1.20149 0.81144 0.79569 0.90308 1.90917 1.52130 1.48736 1.43489 1.47996 1.31016 1.48027 1.07542 1.21727 0.95777 0.94196 0.89927 1.21924 1.02132 0.95463 0.97812 1.21537 0.99150 1.00610 0.94480 1.21934 1.00019 0.95289 0.99506 1.21199 0.99069 0.93668 0.80202 0.91445 1.22755 0.98715 0.96899 0.92742 0.88078 1.23029 0.99636 0.98834 0.96842 1.21056 0.98544 0.82437 0.92304 1.44444 1.68239 1.03670 1.16562 1.19011 1.30254 0.85069 0.99643 0.91019 1.24741 1.01872 0.96928 0.97483 1.69967 1.49141 1.24252 1.14238 0.86246 0.78499 0.83216 0.78144 1.21417 1.21709 1.21538 1.21910 0.93343 0.94056 0.88358 1.77952 0.96750 1.12202 1.26300 1.47893 1.04251 1.09987 1.57746 0.71571 0.89209 0.89829 0.88258 0.86607 0.87146 0.91331 0.89976 0.90999 0.91378 0.91891 0.91872 0.90313 0.91507 0.93091 0.92738 0.94136 0.94548 0.94088 0.91599 0.98654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.51 36.01 0.38 -0.21 16 2 C 0.28 3.61 8.24 -155.69 -1.28 2.33 16 3 N -0.53 -8.28 11.19 -8.16 -0.09 -8.37 16 4 C 0.25 3.90 6.63 -156.86 -1.04 2.86 16 5 C -0.05 -0.58 4.68 -29.03 -0.14 -0.72 16 6 C 0.50 7.87 7.44 -10.99 -0.08 7.79 16 7 O -0.48 -10.04 9.04 5.56 0.05 -9.99 16 8 N -0.61 -8.03 2.98 -165.46 -0.49 -8.53 16 9 C 0.11 0.92 6.35 -3.70 -0.02 0.89 16 10 C -0.14 -1.04 6.08 -26.61 -0.16 -1.20 16 11 C -0.12 -1.09 5.89 -26.69 -0.16 -1.24 16 12 C -0.13 -1.58 4.71 -26.83 -0.13 -1.70 16 13 C 0.16 2.43 2.65 -67.82 -0.18 2.25 16 14 H 0.07 1.04 7.75 -51.93 -0.40 0.64 16 15 C -0.09 -1.85 1.96 -88.47 -0.17 -2.02 16 16 H 0.10 2.30 5.89 -51.99 -0.31 2.00 16 17 C -0.14 -2.99 5.03 -24.89 -0.13 -3.12 16 18 C 0.18 4.92 5.37 -3.06 -0.02 4.90 16 19 N -0.60 -17.48 3.39 -170.07 -0.58 -18.05 16 20 C -0.21 -6.56 10.28 -15.06 -0.15 -6.72 16 21 H 0.07 2.20 7.83 -52.49 -0.41 1.78 16 22 C -0.02 -0.47 5.49 -17.43 -0.10 -0.56 16 23 N -0.93 -29.44 10.31 55.49 0.57 -28.87 16 24 Si 0.91 23.93 29.55 -169.99 -5.02 18.90 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 28 C 0.15 3.65 6.03 -2.54 -0.02 3.63 16 29 N -0.30 -4.82 12.80 32.42 0.41 -4.40 16 30 N -0.48 -6.09 7.45 32.62 0.24 -5.85 16 31 H 0.44 3.89 8.96 -182.34 -1.63 2.26 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.12 1.12 7.88 -51.93 -0.41 0.71 16 36 H 0.11 1.06 7.75 -51.93 -0.40 0.65 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.52 5.93 -51.93 -0.31 0.22 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.97 6.88 -51.93 -0.36 0.62 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.05 0.97 7.49 -51.93 -0.39 0.58 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 48 H 0.04 1.07 7.51 -51.93 -0.39 0.68 16 49 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 50 H 0.07 1.74 5.52 -52.09 -0.29 1.46 16 51 H 0.00 -0.10 7.77 -51.92 -0.40 -0.50 16 LS Contribution 389.64 15.07 5.87 5.87 Total: -1.00 -40.37 389.64 -11.87 -52.24 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -9.45 Total: -0.11 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -3.39 Total: 7.16 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: 0.07 Total: -74.07 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.05 Total: -9.99 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.02 Total: 18.90 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -40.37 -11.87 -52.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039221791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.249 kcal (2) G-P(sol) polarization free energy of solvation -40.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds