Wall clock time and date at job start Wed Apr 1 2020 05:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30837 * 125.95807 * 2 1 4 4 C 1.33244 * 109.82469 * 180.02562 * 3 2 1 5 5 C 1.50695 * 125.52311 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.47321 * 90.00200 * 5 4 3 7 7 O 1.21276 * 119.99632 * 359.97438 * 6 5 4 8 8 N 1.34768 * 119.99887 * 180.27765 * 6 5 4 9 9 C 1.46933 * 120.63520 * 355.02202 * 8 6 5 10 10 C 1.53197 * 108.77366 * 126.37161 * 9 8 6 11 11 C 1.53039 * 109.31288 * 54.64136 * 10 9 8 12 12 C 1.53044 * 109.53562 * 298.63340 * 11 10 9 13 13 C 1.46923 * 120.63131 * 174.74889 * 8 6 5 14 14 H 1.09006 * 109.59360 * 113.83675 * 13 8 6 15 15 C 1.53004 * 109.58394 * 353.41658 * 13 8 6 16 16 H 1.09002 * 110.88547 * 319.48373 * 15 13 8 17 17 C 1.55161 * 111.00235 * 195.56501 * 15 13 8 18 18 C 1.54324 * 102.94021 * 206.42086 * 17 15 13 19 19 N 1.47028 * 107.26983 * 22.19174 * 18 17 15 20 20 C 1.36933 * 125.64553 * 181.09253 * 19 18 17 21 21 H 1.07999 * 119.99784 * 179.97438 * 20 19 18 22 22 C 1.38816 * 120.00428 * 359.96139 * 20 19 18 23 23 N 1.31615 * 119.99671 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00262 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47572 * 59.99727 * 24 22 20 26 26 H 1.48494 * 109.47221 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46993 * 299.99512 * 24 22 20 28 28 C 1.47415 * 108.70480 * 1.05850 * 19 18 17 29 29 N 1.30706 * 108.94636 * 0.26516 * 4 3 2 30 30 N 1.34427 * 125.96199 * 180.02562 * 2 1 3 31 31 H 0.96992 * 126.82256 * 359.97438 * 30 2 1 32 32 H 1.09005 * 109.46970 * 89.97815 * 1 2 3 33 33 H 1.08994 * 109.47281 * 209.97400 * 1 2 3 34 34 H 1.08999 * 109.47385 * 329.97757 * 1 2 3 35 35 H 1.09003 * 109.47337 * 330.00133 * 5 4 3 36 36 H 1.09002 * 109.47254 * 210.00175 * 5 4 3 37 37 H 1.08998 * 109.58898 * 246.16177 * 9 8 6 38 38 H 1.09003 * 109.57978 * 6.58668 * 9 8 6 39 39 H 1.09003 * 109.49249 * 174.59276 * 10 9 8 40 40 H 1.08993 * 109.49817 * 294.68448 * 10 9 8 41 41 H 1.09003 * 109.45825 * 58.64773 * 11 10 9 42 42 H 1.08997 * 109.46035 * 178.61498 * 11 10 9 43 43 H 1.08999 * 109.49514 * 181.31709 * 12 11 10 44 44 H 1.09005 * 109.49875 * 301.37857 * 12 11 10 45 45 H 1.08998 * 110.72295 * 324.78177 * 17 15 13 46 46 H 1.08996 * 110.72298 * 88.06250 * 17 15 13 47 47 H 1.08998 * 109.88353 * 262.77674 * 18 17 15 48 48 H 1.09006 * 109.88247 * 141.60669 * 18 17 15 49 49 H 0.97004 * 120.00082 * 179.97438 * 23 22 20 50 50 H 1.08994 * 110.37348 * 217.02863 * 28 19 18 51 51 H 1.09009 * 110.45961 * 94.75469 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0591 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7371 1.6237 -0.0002 6 6 5.1315 1.9343 1.4208 7 8 4.5134 1.4451 2.3424 8 7 6.1673 2.7606 1.6673 9 6 6.9894 3.2799 0.5658 10 6 7.0369 4.8080 0.6640 11 6 7.5260 5.2107 2.0571 12 6 6.5489 4.6889 3.1132 13 6 6.4923 3.1640 3.0422 14 1 7.4609 2.7517 3.3248 15 6 5.4137 2.6477 3.9967 16 1 4.4218 2.7581 3.5584 17 6 5.4983 3.3633 5.3708 18 6 4.8923 2.3254 6.3389 19 7 5.0124 1.0079 5.6973 20 6 4.5729 -0.1781 6.2219 21 1 4.7085 -1.0961 5.6694 22 6 3.9532 -0.2007 7.4638 23 7 3.7886 0.9180 8.1374 24 14 3.3543 -1.8187 8.1796 25 1 4.5031 -2.7468 8.3351 26 1 2.7325 -1.5734 9.5056 27 1 2.3503 -2.4223 7.2669 28 6 5.6837 1.1754 4.3956 29 7 3.6194 -0.6167 -0.0066 30 7 2.2964 -1.0881 -0.0005 31 1 2.0094 -2.0145 -0.0006 32 1 -0.3633 0.0004 -1.0277 33 1 -0.3633 -0.8902 0.5134 34 1 -0.3634 0.8898 0.5142 35 1 4.4699 2.5475 -0.5133 36 1 5.5741 1.1514 -0.5146 37 1 7.9994 2.8772 0.6422 38 1 6.5488 2.9885 -0.3877 39 1 7.7208 5.1998 -0.0890 40 1 6.0395 5.2145 0.4970 41 1 8.5131 4.7831 2.2330 42 1 7.5842 6.2972 2.1215 43 1 6.8853 4.9960 4.1034 44 1 5.5561 5.0970 2.9235 45 1 6.5350 3.5751 5.6322 46 1 4.9059 4.2782 5.3663 47 1 3.8423 2.5555 6.5192 48 1 5.4423 2.3309 7.2800 49 1 3.3553 0.9024 9.0052 50 1 5.2548 0.4977 3.6575 51 1 6.7550 0.9994 4.4938 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039221791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:41 Heat of formation + Delta-G solvation = 72.574455 kcal Electronic energy + Delta-G solvation = -32452.109985 eV Core-core repulsion = 28388.703021 eV Total energy + Delta-G solvation = -4063.406964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.15945 -41.72502 -38.86518 -38.22228 -35.19400 -34.49267 -33.77661 -33.34530 -32.69305 -30.97986 -30.35968 -29.04030 -28.55653 -26.73030 -25.49746 -24.18700 -22.95531 -22.29142 -21.73439 -21.14848 -21.05257 -19.99973 -19.00705 -18.87296 -17.78563 -17.21055 -16.67608 -16.56269 -16.31914 -16.09977 -15.64657 -15.46989 -15.07416 -14.93752 -14.77406 -14.38642 -14.27849 -14.06833 -14.03088 -13.68974 -13.65262 -13.59519 -13.53737 -13.19452 -13.10201 -12.81757 -12.77079 -12.70117 -12.27473 -12.13476 -11.99550 -11.83767 -11.66302 -11.46844 -11.36458 -11.34767 -11.16570 -11.08912 -11.03650 -10.74015 -10.51931 -9.96751 -9.41171 -8.82942 -7.86233 -5.20196 0.58346 1.35764 1.41570 1.48234 1.64383 1.72931 1.75070 2.23462 2.46442 3.02509 3.28889 3.51969 3.55891 3.80146 3.82164 3.87747 3.98977 4.08142 4.19165 4.22015 4.29369 4.36912 4.38813 4.41921 4.48717 4.60743 4.67382 4.67857 4.74090 4.78029 4.84240 4.97848 5.01399 5.02277 5.06554 5.13778 5.19296 5.25011 5.26538 5.31475 5.35313 5.37609 5.39956 5.56970 5.63440 5.68709 5.71489 5.87586 6.19200 6.19599 6.54753 7.07740 7.09756 7.39506 7.79650 8.46198 9.24392 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007057 B = 0.004848 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3966.508645 B = 5773.736495 C = 9021.665127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.283 3.717 3 N -0.567 5.567 4 C 0.238 3.762 5 C -0.040 4.040 6 C 0.497 3.503 7 O -0.544 6.544 8 N -0.605 5.605 9 C 0.098 3.902 10 C -0.130 4.130 11 C -0.116 4.116 12 C -0.124 4.124 13 C 0.167 3.833 14 H 0.068 0.932 15 C -0.069 4.069 16 H 0.075 0.925 17 C -0.128 4.128 18 C 0.189 3.811 19 N -0.627 5.627 20 C -0.241 4.241 21 H 0.066 0.934 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.981 3.019 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.281 1.281 28 C 0.151 3.849 29 N -0.341 5.341 30 N -0.478 5.478 31 H 0.452 0.548 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.075 0.925 47 H -0.001 1.001 48 H 0.004 0.996 49 H 0.247 0.753 50 H 0.047 0.953 51 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 7.497 -25.207 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.005 3.995 3 N -0.297 5.297 4 C -0.046 4.046 5 C -0.082 4.082 6 C 0.285 3.715 7 O -0.423 6.423 8 N -0.339 5.339 9 C -0.023 4.023 10 C -0.168 4.168 11 C -0.154 4.154 12 C -0.162 4.162 13 C 0.063 3.937 14 H 0.086 0.914 15 C -0.089 4.089 16 H 0.093 0.907 17 C -0.166 4.166 18 C 0.064 3.936 19 N -0.353 5.353 20 C -0.370 4.370 21 H 0.083 0.917 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.808 3.192 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.208 1.208 28 C 0.026 3.974 29 N -0.170 5.170 30 N -0.198 5.198 31 H 0.300 0.700 32 H 0.138 0.862 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.017 0.983 48 H 0.022 0.978 49 H 0.056 0.944 50 H 0.064 0.936 51 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 3.036 7.127 -24.569 25.762 hybrid contribution -0.886 -1.780 1.250 2.348 sum 2.150 5.347 -23.320 24.021 Atomic orbital electron populations 1.20620 0.80408 1.05998 1.06283 1.25203 0.98283 0.82197 0.93845 1.70282 1.01782 1.31053 1.26608 1.23799 0.93538 0.90058 0.97165 1.20082 0.93494 0.99393 0.95202 1.20766 0.80748 0.78883 0.91127 1.90890 1.54385 1.51379 1.45607 1.48103 1.30704 1.47088 1.07965 1.22152 0.95864 0.95044 0.89257 1.21925 1.02747 0.94391 0.97736 1.21534 0.98327 1.01510 0.93997 1.21883 1.00774 0.92549 1.01033 1.21010 0.96596 0.95718 0.80380 0.91416 1.22435 0.99412 0.93666 0.93338 0.90732 1.22893 1.00720 0.97562 0.95473 1.20849 0.96081 0.83836 0.92864 1.44808 1.68458 1.03666 1.18339 1.19329 1.31285 0.85998 1.00382 0.91654 1.25673 1.01904 1.00952 0.97649 1.70211 1.49347 1.26431 1.14224 0.85128 0.78149 0.78709 0.77212 1.20109 1.21086 1.20751 1.22013 0.92332 0.96914 0.86120 1.77834 0.98657 1.12816 1.27707 1.47856 1.03496 1.10903 1.57535 0.69967 0.86183 0.87776 0.88831 0.83712 0.84210 0.89882 0.87225 0.87851 0.91753 0.91121 0.90292 0.90388 0.92374 0.90734 0.90647 0.98275 0.97774 0.94392 0.93555 0.98781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.51 71.24 0.75 -0.29 16 2 C 0.28 7.13 8.24 138.22 1.14 8.27 16 3 N -0.57 -17.78 11.19 -179.73 -2.01 -19.80 16 4 C 0.24 7.39 6.63 138.63 0.92 8.31 16 5 C -0.04 -0.92 4.68 29.10 0.14 -0.79 16 6 C 0.50 15.45 7.44 87.66 0.65 16.10 16 7 O -0.54 -23.84 9.04 -3.02 -0.03 -23.87 16 8 N -0.60 -14.91 2.98 -795.80 -2.37 -17.28 16 9 C 0.10 1.30 6.35 86.36 0.55 1.85 16 10 C -0.13 -1.41 6.08 30.67 0.19 -1.23 16 11 C -0.12 -1.65 5.89 30.62 0.18 -1.46 16 12 C -0.12 -2.75 4.71 30.53 0.14 -2.60 16 13 C 0.17 4.84 2.65 44.83 0.12 4.96 16 14 H 0.07 2.00 7.75 -2.38 -0.02 1.98 16 15 C -0.07 -2.85 1.96 -9.40 -0.02 -2.87 16 16 H 0.07 3.55 5.89 -3.73 -0.02 3.53 16 17 C -0.13 -5.39 5.03 31.78 0.16 -5.23 16 18 C 0.19 10.81 5.37 86.73 0.47 11.28 16 19 N -0.63 -38.31 3.39 -691.99 -2.35 -40.66 16 20 C -0.24 -15.71 10.28 84.03 0.86 -14.84 16 21 H 0.07 4.21 7.83 -2.91 -0.02 4.18 16 22 C -0.07 -4.42 5.49 84.86 0.47 -3.96 16 23 N -0.95 -63.06 10.31 21.65 0.22 -62.84 16 24 Si 0.98 50.54 29.55 68.60 2.03 52.57 16 25 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 27 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 28 C 0.15 7.74 6.03 86.86 0.52 8.26 16 29 N -0.34 -10.99 12.80 -51.34 -0.66 -11.64 16 30 N -0.48 -12.19 7.45 -50.71 -0.38 -12.57 16 31 H 0.45 8.01 8.96 -213.11 -1.91 6.10 16 32 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.15 2.42 7.88 -2.39 -0.02 2.40 16 36 H 0.14 2.32 7.75 -2.39 -0.02 2.31 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.11 0.89 5.93 -2.39 -0.01 0.87 16 39 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 1.74 6.88 -2.39 -0.02 1.72 16 44 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.07 2.79 7.49 -2.39 -0.02 2.77 16 46 H 0.07 2.85 8.14 -2.39 -0.02 2.84 16 47 H 0.00 -0.07 7.38 -2.39 -0.02 -0.08 16 48 H 0.00 0.25 7.51 -2.38 -0.02 0.24 16 49 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 50 H 0.05 2.61 5.52 -5.23 -0.03 2.58 16 51 H -0.01 -0.27 7.77 -2.38 -0.02 -0.29 16 Total: -1.00 -95.95 389.64 0.71 -95.25 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -0.99 Total: 15.08 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 7.23 Total: 25.75 kcal Atomic # 7 Polarization: -157.24 SS G_CDS: -7.54 Total: -164.79 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.03 Total: -23.87 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.03 Total: 52.57 kcal Total: -95.95 0.71 -95.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039221791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.820 kcal (2) G-P(sol) polarization free energy of solvation -95.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds