Wall clock time and date at job start Wed Apr 1 2020 05:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36600 * 126.57604 * 2 1 4 4 C 1.47522 * 125.77284 * 0.02562 * 3 2 1 5 5 O 1.21595 * 119.99784 * 6.66277 * 4 3 2 6 6 N 1.34772 * 120.00404 * 186.65611 * 4 3 2 7 7 C 1.46948 * 120.43838 * 7.35760 * 6 4 3 8 8 C 1.53587 * 108.53310 * 125.75339 * 7 6 4 9 9 H 1.08996 * 110.60205 * 172.15956 * 8 7 6 10 10 C 1.53368 * 108.68506 * 294.35700 * 8 7 6 11 11 C 1.53013 * 109.27187 * 60.29278 * 10 8 7 12 12 C 1.53009 * 109.79379 * 60.57040 * 11 10 8 13 13 C 1.53375 * 109.25713 * 299.42321 * 12 11 10 14 14 H 1.09001 * 111.08355 * 177.83322 * 13 12 11 15 15 C 1.46943 * 120.44418 * 187.08144 * 6 4 3 16 16 N 1.47564 * 107.98464 * 56.37681 * 13 12 11 17 17 C 1.36941 * 121.61009 * 122.23874 * 16 13 12 18 18 H 1.08001 * 119.99945 * 40.04256 * 17 16 13 19 19 C 1.38818 * 119.99720 * 220.04483 * 17 16 13 20 20 N 1.31617 * 120.00323 * 4.11749 * 19 17 16 21 21 Si 1.86803 * 119.99573 * 184.11691 * 19 17 16 22 22 H 1.48497 * 109.47266 * 59.99796 * 21 19 17 23 23 H 1.48497 * 109.47000 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46986 * 299.99703 * 21 19 17 25 25 N 1.34401 * 108.45723 * 180.23565 * 3 2 1 26 26 N 1.28764 * 109.52434 * 359.77639 * 25 3 2 27 27 N 1.34809 * 126.58601 * 179.85222 * 2 1 3 28 28 C 1.46504 * 126.58996 * 0.03199 * 27 2 1 29 29 C 1.53009 * 109.46971 * 239.71643 * 28 27 2 30 30 C 1.52995 * 109.47178 * 119.71646 * 28 27 2 31 31 H 1.09000 * 109.47109 * 270.14844 * 1 2 3 32 32 H 1.09003 * 109.47775 * 30.15309 * 1 2 3 33 33 H 1.09008 * 109.46981 * 150.15551 * 1 2 3 34 34 H 1.09009 * 109.62585 * 245.46415 * 7 6 4 35 35 H 1.09002 * 109.62860 * 6.03869 * 7 6 4 36 36 H 1.09003 * 109.50508 * 180.23104 * 10 8 7 37 37 H 1.08999 * 109.50857 * 300.35286 * 10 8 7 38 38 H 1.08991 * 109.41619 * 300.47282 * 11 10 8 39 39 H 1.09001 * 109.36450 * 180.63132 * 11 10 8 40 40 H 1.09001 * 109.50822 * 179.49289 * 12 11 10 41 41 H 1.08997 * 109.54546 * 59.37635 * 12 11 10 42 42 H 1.08996 * 109.62761 * 353.95229 * 15 6 4 43 43 H 1.09003 * 109.62337 * 114.52374 * 15 6 4 44 44 H 0.97000 * 119.99862 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.47180 * 359.70985 * 28 27 2 46 46 H 1.08994 * 109.47006 * 59.99991 * 29 28 27 47 47 H 1.09006 * 109.46782 * 299.99674 * 29 28 27 48 48 H 1.08993 * 109.46874 * 180.02562 * 29 28 27 49 49 H 1.09004 * 109.47040 * 59.99898 * 30 28 27 50 50 H 1.09001 * 109.47360 * 179.97438 * 30 28 27 51 51 H 1.09002 * 109.47113 * 299.99846 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8736 2.5028 0.0005 5 8 0.6926 2.7649 0.1232 6 7 2.7739 3.4965 -0.1348 7 6 4.1779 3.1921 -0.4441 8 6 4.5846 3.9835 -1.6960 9 1 5.6556 3.8919 -1.8765 10 6 3.7771 3.4618 -2.8909 11 6 2.2847 3.6599 -2.6171 12 6 1.9859 5.1485 -2.4276 13 6 2.7863 5.6767 -1.2306 14 1 2.6245 6.7457 -1.0917 15 6 2.3635 4.8990 0.0190 16 7 4.2137 5.3949 -1.4768 17 6 5.1489 6.3949 -1.5012 18 1 5.0938 7.2033 -0.7871 19 6 6.1676 6.3696 -2.4439 20 7 6.1888 5.4296 -3.3649 21 14 7.5084 7.6698 -2.4051 22 1 8.2216 7.6067 -1.1042 23 1 8.4702 7.4219 -3.5090 24 1 6.8993 9.0139 -2.5711 25 7 3.5983 0.6790 -0.0052 26 7 3.6299 -0.6082 -0.0038 27 7 2.3105 -1.0825 0.0028 28 6 1.8864 -2.4848 0.0058 29 6 2.4346 -3.1807 1.2533 30 6 2.4238 -3.1827 -1.2452 31 1 -0.3633 0.0027 1.0277 32 1 -0.3635 0.8886 -0.5162 33 1 -0.3633 -0.8914 -0.5115 34 1 4.8093 3.4845 0.3950 35 1 4.2878 2.1245 -0.6341 36 1 4.0586 4.0122 -3.7887 37 1 3.9831 2.4010 -3.0342 38 1 2.0068 3.1167 -1.7141 39 1 1.7088 3.2793 -3.4607 40 1 0.9206 5.2852 -2.2418 41 1 2.2718 5.6952 -3.3262 42 1 1.2809 4.9533 0.1332 43 1 2.8488 5.3285 0.8954 44 1 6.9005 5.4121 -4.0237 45 1 0.7977 -2.5351 0.0106 46 1 2.0518 -2.6835 2.1445 47 1 3.5235 -3.1304 1.2485 48 1 2.1195 -4.2241 1.2553 49 1 3.5127 -3.1324 -1.2499 50 1 2.1087 -4.2262 -1.2428 51 1 2.0333 -2.6870 -2.1339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039956712.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:43 Heat of formation + Delta-G solvation = 117.343461 kcal Electronic energy + Delta-G solvation = -33368.923957 eV Core-core repulsion = 29307.458322 eV Total energy + Delta-G solvation = -4061.465635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.31902 -40.22331 -37.53882 -36.60261 -33.92133 -32.99910 -32.66167 -31.87072 -30.78230 -30.24159 -28.06434 -27.76921 -26.55874 -25.41298 -24.14513 -23.71251 -22.51119 -21.29617 -20.95076 -20.33855 -19.39534 -18.17687 -17.49683 -16.66056 -16.13314 -15.77244 -15.62993 -14.78958 -14.70293 -14.59881 -14.21673 -13.82598 -13.67662 -13.49899 -13.32316 -13.28701 -13.15016 -12.92576 -12.75031 -12.67632 -12.61124 -12.27681 -12.10495 -11.94904 -11.89524 -11.81136 -11.47244 -11.24652 -11.10306 -10.88616 -10.68886 -10.45508 -10.23719 -10.22803 -9.95820 -9.89362 -9.81279 -9.61826 -9.24085 -9.10879 -9.02867 -8.39362 -7.71064 -6.33082 -5.75141 -3.32765 1.17681 1.90266 1.95613 3.40084 3.45263 3.45782 3.48502 3.59954 4.01667 4.19324 4.37117 4.47570 4.49608 4.58794 4.78268 4.96728 5.07354 5.14158 5.26078 5.27834 5.33580 5.37317 5.42838 5.53585 5.64612 5.69157 5.80915 5.85675 5.89547 5.92557 6.01148 6.09957 6.14852 6.25847 6.38489 6.44618 6.50940 6.60967 6.66330 6.75470 6.81952 6.91547 7.05713 7.15638 7.25598 7.29537 7.61765 7.72471 7.83401 7.97244 8.13616 8.55380 8.59060 9.24962 9.81437 10.52005 11.30712 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.003410 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.300621 B = 8208.247953 C = 8956.632035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.115 3.885 3 C -0.094 4.094 4 C 0.600 3.400 5 O -0.557 6.557 6 N -0.570 5.570 7 C 0.063 3.937 8 C 0.185 3.815 9 H 0.106 0.894 10 C -0.112 4.112 11 C -0.137 4.137 12 C -0.118 4.118 13 C 0.153 3.847 14 H 0.078 0.922 15 C 0.101 3.899 16 N -0.579 5.579 17 C -0.257 4.257 18 H 0.060 0.940 19 C 0.017 3.983 20 N -0.894 5.894 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.283 1.283 25 N -0.194 5.194 26 N -0.071 5.071 27 N -0.359 5.359 28 C 0.145 3.855 29 C -0.162 4.162 30 C -0.164 4.164 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.029 0.971 38 H 0.077 0.923 39 H 0.026 0.974 40 H 0.040 0.960 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.255 0.745 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.219 -17.377 6.390 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.022 4.022 3 C -0.233 4.233 4 C 0.387 3.613 5 O -0.437 6.437 6 N -0.300 5.300 7 C -0.062 4.062 8 C 0.078 3.922 9 H 0.124 0.876 10 C -0.151 4.151 11 C -0.175 4.175 12 C -0.158 4.158 13 C 0.045 3.955 14 H 0.096 0.904 15 C -0.023 4.023 16 N -0.300 5.300 17 C -0.387 4.387 18 H 0.078 0.922 19 C -0.183 4.183 20 N -0.536 5.536 21 Si 0.731 3.269 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.209 1.209 25 N -0.066 5.066 26 N -0.049 5.049 27 N -0.146 5.146 28 C 0.043 3.957 29 C -0.220 4.220 30 C -0.221 4.221 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.095 0.905 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.125 0.875 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.094 0.906 50 H 0.099 0.901 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.164 -17.671 6.321 21.343 hybrid contribution -0.085 0.805 -0.248 0.846 sum -10.249 -16.866 6.073 20.649 Atomic orbital electron populations 1.20652 0.85015 1.04968 1.04383 1.21837 0.96068 0.86393 0.97898 1.21311 0.88859 0.95564 1.17534 1.16541 0.85367 0.82561 0.76804 1.90714 1.16078 1.83363 1.53503 1.47954 1.10218 1.05817 1.65991 1.23448 0.79218 1.03379 1.00144 1.21011 0.99596 0.82860 0.88756 0.87644 1.21800 0.93896 0.97886 1.01516 1.22085 0.97398 0.97093 1.00918 1.21883 0.97431 0.96551 0.99900 1.21168 0.86559 0.96671 0.91130 0.90442 1.22206 1.00082 0.80226 0.99807 1.44272 1.00247 1.02081 1.83445 1.18987 1.05618 1.03596 1.10485 0.92233 1.25390 1.00316 0.97588 0.95040 1.69894 1.33244 1.33671 1.16816 0.86409 0.81558 0.81818 0.77084 1.20928 1.21700 1.20909 1.74546 1.18663 1.03280 1.10116 1.81956 0.96279 1.03975 1.22718 1.50584 1.06419 1.06982 1.50624 1.21595 1.00309 0.75584 0.98205 1.22148 1.03278 1.00689 0.95849 1.22164 1.03409 1.00680 0.95884 0.89256 0.87131 0.91084 0.92341 0.86593 0.90598 0.95191 0.90479 0.95509 0.94113 0.92525 0.90005 0.91963 0.93535 0.87486 0.91782 0.90639 0.90078 0.90588 0.90084 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 9.34 36.00 0.34 -0.55 16 2 C 0.12 1.52 7.02 -81.88 -0.57 0.94 16 3 C -0.09 -1.57 6.70 -83.55 -0.56 -2.13 16 4 C 0.60 11.13 5.05 -12.48 -0.06 11.07 16 5 O -0.56 -10.62 14.13 5.28 0.07 -10.54 16 6 N -0.57 -11.12 1.66 -173.76 -0.29 -11.41 16 7 C 0.06 1.29 5.55 -3.49 -0.02 1.27 16 8 C 0.18 4.34 2.60 -66.85 -0.17 4.17 16 9 H 0.11 2.80 6.39 -51.93 -0.33 2.47 16 10 C -0.11 -2.54 5.51 -26.53 -0.15 -2.69 16 11 C -0.14 -2.86 5.55 -26.72 -0.15 -3.01 16 12 C -0.12 -2.46 5.57 -26.53 -0.15 -2.61 16 13 C 0.15 3.25 3.62 -67.09 -0.24 3.01 16 14 H 0.08 1.61 8.01 -51.93 -0.42 1.20 16 15 C 0.10 1.94 5.85 -3.73 -0.02 1.92 16 16 N -0.58 -14.18 2.48 -155.70 -0.39 -14.56 16 17 C -0.26 -6.87 9.64 -15.06 -0.15 -7.02 16 18 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 19 C 0.02 0.46 5.21 -17.43 -0.09 0.37 16 20 N -0.89 -24.99 10.64 55.49 0.59 -24.40 16 21 Si 0.90 21.39 29.56 -169.99 -5.02 16.36 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 N -0.19 -3.37 8.76 32.85 0.29 -3.08 16 26 N -0.07 -1.08 13.67 60.35 0.82 -0.25 16 27 N -0.36 -4.24 3.28 -50.40 -0.17 -4.41 16 28 C 0.14 1.05 3.68 -67.93 -0.25 0.80 16 29 C -0.16 -1.00 9.47 37.16 0.35 -0.65 16 30 C -0.16 -1.07 9.47 37.16 0.35 -0.72 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.11 1.29 6.60 -51.93 -0.34 0.95 16 33 H 0.07 0.46 7.19 -51.92 -0.37 0.09 16 34 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 35 H 0.12 2.33 4.06 -86.15 -0.35 1.99 16 36 H 0.08 1.95 7.55 -51.93 -0.39 1.56 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.58 2.45 -52.45 -0.13 1.45 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.08 1.50 6.98 -51.93 -0.36 1.14 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 45 H 0.11 0.52 6.79 -51.93 -0.35 0.16 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 383.31 15.07 5.78 5.78 Total: -1.00 -31.13 383.31 -7.94 -39.08 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.09 Total: 3.27 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -1.54 Total: 4.17 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.86 Total: -58.11 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.13 -7.94 -39.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039956712.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.422 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds