Wall clock time and date at job start Wed Apr 1 2020 05:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36592 * 126.58117 * 2 1 4 4 C 1.47529 * 125.77167 * 359.95181 * 3 2 1 5 5 O 1.21598 * 119.99664 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00125 * 179.97438 * 4 3 2 7 7 C 1.48273 * 127.72227 * 359.97438 * 6 4 3 8 8 C 1.54746 * 104.67486 * 141.28279 * 7 6 4 9 9 C 1.52878 * 104.41284 * 23.63511 * 8 7 6 10 10 C 1.53702 * 111.75147 * 237.42916 * 9 8 7 11 11 C 1.54584 * 102.94906 * 273.44084 * 10 9 8 12 12 N 1.47137 * 107.33067 * 339.03854 * 11 10 9 13 13 C 1.36938 * 125.60519 * 179.08826 * 12 11 10 14 14 H 1.07995 * 119.99830 * 174.74755 * 13 12 11 15 15 C 1.38813 * 120.00009 * 354.74352 * 13 12 11 16 16 N 1.31617 * 120.00079 * 7.05072 * 15 13 12 17 17 Si 1.86802 * 119.99845 * 187.05403 * 15 13 12 18 18 H 1.48501 * 109.47053 * 94.98608 * 17 15 13 19 19 H 1.48495 * 109.46886 * 214.98627 * 17 15 13 20 20 H 1.48503 * 109.47010 * 334.98594 * 17 15 13 21 21 C 1.47700 * 108.78612 * 359.06605 * 12 11 10 22 22 C 1.48489 * 127.72282 * 179.97438 * 6 4 3 23 23 N 1.34401 * 108.46163 * 180.21646 * 3 2 1 24 24 N 1.28766 * 109.51721 * 359.58557 * 23 3 2 25 25 N 1.34813 * 126.58009 * 179.97438 * 2 1 3 26 26 C 1.46505 * 126.59102 * 359.97438 * 25 2 1 27 27 C 1.53008 * 109.46742 * 119.99949 * 26 25 2 28 28 C 1.52996 * 109.47183 * 239.99605 * 26 25 2 29 29 H 1.09005 * 109.46891 * 90.02596 * 1 2 3 30 30 H 1.08993 * 109.47331 * 210.02556 * 1 2 3 31 31 H 1.09002 * 109.46778 * 330.02802 * 1 2 3 32 32 H 1.09005 * 110.39687 * 22.48264 * 7 6 4 33 33 H 1.09001 * 110.49229 * 260.13440 * 7 6 4 34 34 H 1.08998 * 110.44922 * 264.90204 * 8 7 6 35 35 H 1.09004 * 110.55368 * 142.42054 * 8 7 6 36 36 H 1.09002 * 110.75136 * 155.02623 * 10 9 8 37 37 H 1.09003 * 110.75036 * 31.85761 * 10 9 8 38 38 H 1.09002 * 109.86944 * 98.47170 * 11 10 9 39 39 H 1.09002 * 109.87588 * 219.45432 * 11 10 9 40 40 H 0.96998 * 120.00138 * 180.02562 * 16 15 13 41 41 H 1.09002 * 110.39379 * 141.39564 * 21 12 11 42 42 H 1.09008 * 110.38829 * 263.78032 * 21 12 11 43 43 H 1.08996 * 110.47138 * 99.56607 * 22 6 4 44 44 H 1.09003 * 110.47224 * 336.96400 * 22 6 4 45 45 H 1.08998 * 109.47361 * 0.02562 * 26 25 2 46 46 H 1.08998 * 109.46804 * 60.00135 * 27 26 25 47 47 H 1.09000 * 109.46900 * 179.97438 * 27 26 25 48 48 H 1.08990 * 109.46972 * 299.99872 * 27 26 25 49 49 H 1.09007 * 109.47039 * 60.00109 * 28 26 25 50 50 H 1.09000 * 109.47298 * 180.02562 * 28 26 25 51 51 H 1.08998 * 109.47641 * 300.00648 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0010 5 8 0.6860 2.7628 -0.0015 6 7 2.7818 3.4988 -0.0004 7 6 4.2597 3.3791 0.0018 8 6 4.7461 4.5110 -0.9346 9 6 3.6090 5.5328 -0.9189 10 6 3.0699 5.8068 -2.3320 11 6 4.0060 6.9229 -2.8494 12 7 4.6146 7.5647 -1.6735 13 6 5.5202 8.5913 -1.7049 14 1 5.8459 9.0525 -0.7843 15 6 6.0197 9.0393 -2.9202 16 7 5.5228 8.5753 -4.0472 17 14 7.3972 10.3005 -2.9559 18 1 8.7030 9.6040 -3.0790 19 1 7.2083 11.2069 -4.1169 20 1 7.3753 11.0931 -1.7003 21 6 4.0876 6.9199 -0.4536 22 6 2.5259 4.9614 -0.0017 23 7 3.5984 0.6789 -0.0048 24 7 3.6299 -0.6084 0.0010 25 7 2.3105 -1.0826 0.0005 26 6 1.8863 -2.4849 0.0016 27 6 2.4286 -3.1827 -1.2474 28 6 2.4295 -3.1810 1.2511 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 4.5627 2.4072 -0.3878 33 1 4.6527 3.5233 1.0082 34 1 4.9016 4.1299 -1.9438 35 1 5.6639 4.9569 -0.5513 36 1 2.0383 6.1563 -2.2907 37 1 3.1497 4.9161 -2.9552 38 1 4.7835 6.4916 -3.4800 39 1 3.4316 7.6544 -3.4177 40 1 5.8721 8.8880 -4.8963 41 1 4.8753 6.8185 0.2930 42 1 3.2530 7.4940 -0.0509 43 1 2.6259 5.3668 1.0051 44 1 1.5350 5.1747 -0.4029 45 1 0.7975 -2.5352 0.0016 46 1 3.5174 -3.1324 -1.2477 47 1 2.1134 -4.2261 -1.2463 48 1 2.0417 -2.6868 -2.1375 49 1 2.0432 -2.6838 2.1409 50 1 2.1143 -4.2244 1.2517 51 1 3.5183 -3.1307 1.2507 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041761460.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:29 Heat of formation + Delta-G solvation = 93.686403 kcal Electronic energy + Delta-G solvation = -31312.503867 eV Core-core repulsion = 27250.012386 eV Total energy + Delta-G solvation = -4062.491482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.48873 -39.92619 -38.20825 -36.78104 -35.60553 -33.29585 -32.60152 -31.29187 -30.17104 -29.17921 -28.53723 -27.93168 -27.88322 -25.57362 -24.37392 -24.10162 -22.47344 -22.26902 -20.57597 -20.15447 -19.39442 -18.65318 -17.50533 -16.79335 -16.47211 -16.25177 -15.80904 -15.39451 -14.90923 -14.65187 -14.45074 -14.08981 -14.00597 -13.80240 -13.65167 -13.50017 -13.36221 -13.16805 -12.85092 -12.76317 -12.62709 -12.41767 -12.33547 -12.10890 -11.97160 -11.95070 -11.64657 -11.45492 -11.24564 -11.06003 -10.87154 -10.79638 -10.61081 -10.43636 -10.10280 -9.99731 -9.92310 -9.76028 -9.61315 -9.59154 -9.30744 -8.51874 -8.47922 -6.75780 -5.66485 -2.98332 0.93457 1.63392 1.72320 3.01888 3.30233 3.43975 3.49144 3.51115 3.82110 3.95785 4.19832 4.29662 4.30856 4.48970 4.54720 4.75909 4.92312 4.93137 5.00863 5.06104 5.09870 5.12977 5.16398 5.19936 5.34972 5.39358 5.52934 5.54519 5.58835 5.59586 5.63586 5.69646 5.88138 5.95727 6.01108 6.05902 6.16310 6.20578 6.28595 6.38500 6.52981 6.55820 6.60873 6.76455 6.82520 6.94770 7.62524 7.64755 7.71787 7.79772 7.89657 8.21584 8.31737 9.27724 9.88355 10.55625 11.45501 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023677 B = 0.002214 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.313979 B =12645.829882 C =13061.084930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.121 3.879 3 C -0.097 4.097 4 C 0.622 3.378 5 O -0.546 6.546 6 N -0.604 5.604 7 C 0.092 3.908 8 C -0.109 4.109 9 C -0.086 4.086 10 C -0.130 4.130 11 C 0.179 3.821 12 N -0.604 5.604 13 C -0.226 4.226 14 H 0.078 0.922 15 C -0.008 4.008 16 N -0.920 5.920 17 Si 0.909 3.091 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.281 1.281 21 C 0.151 3.849 22 C 0.124 3.876 23 N -0.200 5.200 24 N -0.067 5.067 25 N -0.358 5.358 26 C 0.144 3.856 27 C -0.163 4.163 28 C -0.163 4.163 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.039 0.961 40 H 0.251 0.749 41 H 0.042 0.958 42 H 0.020 0.980 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.064 0.936 50 H 0.082 0.918 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 -25.956 9.490 29.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.017 4.017 3 C -0.236 4.236 4 C 0.409 3.591 5 O -0.424 6.424 6 N -0.335 5.335 7 C -0.031 4.031 8 C -0.147 4.147 9 C -0.088 4.088 10 C -0.168 4.168 11 C 0.055 3.945 12 N -0.330 5.330 13 C -0.354 4.354 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.567 5.567 17 Si 0.740 3.260 18 H -0.217 1.217 19 H -0.219 1.219 20 H -0.207 1.207 21 C 0.025 3.975 22 C 0.002 3.998 23 N -0.073 5.073 24 N -0.046 5.046 25 N -0.145 5.145 26 C 0.043 3.957 27 C -0.221 4.221 28 C -0.221 4.221 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.127 0.873 46 H 0.094 0.906 47 H 0.101 0.899 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.101 0.899 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.315 -26.203 9.323 29.331 hybrid contribution -0.132 0.795 -0.169 0.824 sum -9.447 -25.408 9.154 28.612 Atomic orbital electron populations 1.20718 0.84821 1.05225 1.04662 1.21882 0.96183 0.86339 0.97310 1.21143 0.89005 0.95147 1.18320 1.16234 0.84522 0.81751 0.76603 1.90749 1.15467 1.83343 1.52829 1.48805 1.07572 1.06365 1.70763 1.22886 0.78439 1.01562 1.00169 1.22316 0.98205 0.94270 0.99953 1.21720 0.94473 0.96200 0.96396 1.22814 0.99501 1.00015 0.94499 1.21191 0.93305 0.90993 0.89028 1.44530 1.49724 1.38927 0.99844 1.19048 1.15155 1.08244 0.92994 0.90462 1.24812 0.99953 1.00315 0.95367 1.69988 1.43392 1.46815 0.96533 0.86141 0.82325 0.80584 0.76997 1.21684 1.21882 1.20673 1.21447 0.95983 0.89293 0.90807 1.22246 0.99839 0.77929 0.99772 1.74625 1.18924 1.03807 1.09972 1.81937 0.96316 1.03522 1.22830 1.50623 1.06347 1.07162 1.50349 1.21642 1.00442 0.75326 0.98336 1.22159 1.03305 1.00825 0.95788 1.22161 1.03301 1.00851 0.95760 0.89047 0.90886 0.86894 0.87980 0.91353 0.90992 0.89808 0.92479 0.92349 0.93549 0.94298 0.93843 0.94012 0.96268 0.90927 0.89801 0.87322 0.90626 0.89913 0.91655 0.91737 0.89916 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 9.41 36.01 0.34 -0.39 16 2 C 0.12 1.30 7.02 -81.88 -0.57 0.72 16 3 C -0.10 -1.34 6.87 -83.55 -0.57 -1.92 16 4 C 0.62 9.71 7.91 -12.47 -0.10 9.61 16 5 O -0.55 -9.22 15.00 5.28 0.08 -9.14 16 6 N -0.60 -9.32 3.33 -170.77 -0.57 -9.89 16 7 C 0.09 1.33 6.68 -2.15 -0.01 1.32 16 8 C -0.11 -1.80 6.28 -25.87 -0.16 -1.96 16 9 C -0.09 -1.52 0.82 -153.72 -0.13 -1.64 16 10 C -0.13 -2.54 5.83 -25.53 -0.15 -2.69 16 11 C 0.18 4.43 5.34 -2.86 -0.02 4.41 16 12 N -0.60 -15.41 3.41 -170.20 -0.58 -15.99 16 13 C -0.23 -6.32 10.27 -15.06 -0.15 -6.47 16 14 H 0.08 2.09 7.84 -52.49 -0.41 1.67 16 15 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 16 N -0.92 -27.36 10.35 55.49 0.57 -26.79 16 17 Si 0.91 22.32 29.56 -169.99 -5.02 17.29 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.15 3.09 6.07 -2.90 -0.02 3.08 16 22 C 0.12 1.95 6.19 -2.95 -0.02 1.93 16 23 N -0.20 -2.85 9.35 32.85 0.31 -2.54 16 24 N -0.07 -0.85 13.67 60.35 0.82 -0.02 16 25 N -0.36 -3.43 3.28 -50.40 -0.17 -3.60 16 26 C 0.14 0.77 3.68 -67.93 -0.25 0.52 16 27 C -0.16 -0.77 9.47 37.16 0.35 -0.42 16 28 C -0.16 -0.73 9.47 37.16 0.35 -0.38 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.32 7.18 -51.93 -0.37 -0.05 16 31 H 0.11 1.06 6.43 -51.93 -0.33 0.73 16 32 H 0.10 1.49 5.47 -51.93 -0.28 1.21 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.25 7.51 -51.93 -0.39 0.86 16 35 H 0.08 1.43 7.55 -51.93 -0.39 1.03 16 36 H 0.06 1.07 7.73 -51.93 -0.40 0.67 16 37 H 0.06 1.10 7.71 -51.93 -0.40 0.70 16 38 H 0.05 1.27 7.30 -51.93 -0.38 0.89 16 39 H 0.04 1.07 7.60 -51.93 -0.39 0.67 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.04 0.82 7.76 -51.93 -0.40 0.42 16 42 H 0.02 0.40 8.06 -51.92 -0.42 -0.02 16 43 H 0.07 1.05 7.95 -51.93 -0.41 0.63 16 44 H 0.08 1.36 7.36 -51.93 -0.38 0.98 16 45 H 0.11 0.33 6.79 -51.93 -0.35 -0.02 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 51 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -33.73 399.74 -7.98 -41.72 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -8.25 Total: -2.45 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.21 Total: 5.39 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.39 Total: -58.84 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.73 -7.98 -41.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041761460.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.403 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds