Wall clock time and date at job start Wed Apr 1 2020 05:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36592 * 126.58117 * 2 1 4 4 C 1.47529 * 125.77167 * 359.95181 * 3 2 1 5 5 O 1.21598 * 119.99664 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00125 * 179.97438 * 4 3 2 7 7 C 1.48273 * 127.72227 * 359.97438 * 6 4 3 8 8 C 1.54746 * 104.67486 * 141.28279 * 7 6 4 9 9 C 1.52878 * 104.41284 * 23.63511 * 8 7 6 10 10 C 1.53702 * 111.75147 * 237.42916 * 9 8 7 11 11 C 1.54584 * 102.94906 * 273.44084 * 10 9 8 12 12 N 1.47137 * 107.33067 * 339.03854 * 11 10 9 13 13 C 1.36938 * 125.60519 * 179.08826 * 12 11 10 14 14 H 1.07995 * 119.99830 * 174.74755 * 13 12 11 15 15 C 1.38813 * 120.00009 * 354.74352 * 13 12 11 16 16 N 1.31617 * 120.00079 * 7.05072 * 15 13 12 17 17 Si 1.86802 * 119.99845 * 187.05403 * 15 13 12 18 18 H 1.48501 * 109.47053 * 94.98608 * 17 15 13 19 19 H 1.48495 * 109.46886 * 214.98627 * 17 15 13 20 20 H 1.48503 * 109.47010 * 334.98594 * 17 15 13 21 21 C 1.47700 * 108.78612 * 359.06605 * 12 11 10 22 22 C 1.48489 * 127.72282 * 179.97438 * 6 4 3 23 23 N 1.34401 * 108.46163 * 180.21646 * 3 2 1 24 24 N 1.28766 * 109.51721 * 359.58557 * 23 3 2 25 25 N 1.34813 * 126.58009 * 179.97438 * 2 1 3 26 26 C 1.46505 * 126.59102 * 359.97438 * 25 2 1 27 27 C 1.53008 * 109.46742 * 119.99949 * 26 25 2 28 28 C 1.52996 * 109.47183 * 239.99605 * 26 25 2 29 29 H 1.09005 * 109.46891 * 90.02596 * 1 2 3 30 30 H 1.08993 * 109.47331 * 210.02556 * 1 2 3 31 31 H 1.09002 * 109.46778 * 330.02802 * 1 2 3 32 32 H 1.09005 * 110.39687 * 22.48264 * 7 6 4 33 33 H 1.09001 * 110.49229 * 260.13440 * 7 6 4 34 34 H 1.08998 * 110.44922 * 264.90204 * 8 7 6 35 35 H 1.09004 * 110.55368 * 142.42054 * 8 7 6 36 36 H 1.09002 * 110.75136 * 155.02623 * 10 9 8 37 37 H 1.09003 * 110.75036 * 31.85761 * 10 9 8 38 38 H 1.09002 * 109.86944 * 98.47170 * 11 10 9 39 39 H 1.09002 * 109.87588 * 219.45432 * 11 10 9 40 40 H 0.96998 * 120.00138 * 180.02562 * 16 15 13 41 41 H 1.09002 * 110.39379 * 141.39564 * 21 12 11 42 42 H 1.09008 * 110.38829 * 263.78032 * 21 12 11 43 43 H 1.08996 * 110.47138 * 99.56607 * 22 6 4 44 44 H 1.09003 * 110.47224 * 336.96400 * 22 6 4 45 45 H 1.08998 * 109.47361 * 0.02562 * 26 25 2 46 46 H 1.08998 * 109.46804 * 60.00135 * 27 26 25 47 47 H 1.09000 * 109.46900 * 179.97438 * 27 26 25 48 48 H 1.08990 * 109.46972 * 299.99872 * 27 26 25 49 49 H 1.09007 * 109.47039 * 60.00109 * 28 26 25 50 50 H 1.09000 * 109.47298 * 180.02562 * 28 26 25 51 51 H 1.08998 * 109.47641 * 300.00648 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0010 5 8 0.6860 2.7628 -0.0015 6 7 2.7818 3.4988 -0.0004 7 6 4.2597 3.3791 0.0018 8 6 4.7461 4.5110 -0.9346 9 6 3.6090 5.5328 -0.9189 10 6 3.0699 5.8068 -2.3320 11 6 4.0060 6.9229 -2.8494 12 7 4.6146 7.5647 -1.6735 13 6 5.5202 8.5913 -1.7049 14 1 5.8459 9.0525 -0.7843 15 6 6.0197 9.0393 -2.9202 16 7 5.5228 8.5753 -4.0472 17 14 7.3972 10.3005 -2.9559 18 1 8.7030 9.6040 -3.0790 19 1 7.2083 11.2069 -4.1169 20 1 7.3753 11.0931 -1.7003 21 6 4.0876 6.9199 -0.4536 22 6 2.5259 4.9614 -0.0017 23 7 3.5984 0.6789 -0.0048 24 7 3.6299 -0.6084 0.0010 25 7 2.3105 -1.0826 0.0005 26 6 1.8863 -2.4849 0.0016 27 6 2.4286 -3.1827 -1.2474 28 6 2.4295 -3.1810 1.2511 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 4.5627 2.4072 -0.3878 33 1 4.6527 3.5233 1.0082 34 1 4.9016 4.1299 -1.9438 35 1 5.6639 4.9569 -0.5513 36 1 2.0383 6.1563 -2.2907 37 1 3.1497 4.9161 -2.9552 38 1 4.7835 6.4916 -3.4800 39 1 3.4316 7.6544 -3.4177 40 1 5.8721 8.8880 -4.8963 41 1 4.8753 6.8185 0.2930 42 1 3.2530 7.4940 -0.0509 43 1 2.6259 5.3668 1.0051 44 1 1.5350 5.1747 -0.4029 45 1 0.7975 -2.5352 0.0016 46 1 3.5174 -3.1324 -1.2477 47 1 2.1134 -4.2261 -1.2463 48 1 2.0417 -2.6868 -2.1375 49 1 2.0432 -2.6838 2.1409 50 1 2.1143 -4.2244 1.2517 51 1 3.5183 -3.1307 1.2507 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041761460.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:27 Heat of formation + Delta-G solvation = 72.497335 kcal Electronic energy + Delta-G solvation = -31313.422694 eV Core-core repulsion = 27250.012386 eV Total energy + Delta-G solvation = -4063.410309 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.35451 -41.26864 -39.57776 -37.40457 -37.15401 -34.48044 -33.98954 -32.37140 -31.60151 -30.77894 -29.95340 -28.87177 -28.27334 -27.24397 -25.78803 -25.01197 -23.90792 -23.28184 -22.10631 -21.29705 -20.45571 -20.08691 -18.80109 -18.28686 -17.39278 -17.24544 -16.93037 -16.70946 -16.53997 -15.79661 -15.65115 -15.40544 -15.21873 -15.16536 -14.48823 -14.35342 -14.19725 -14.06540 -13.97527 -13.86629 -13.82324 -13.45682 -13.21689 -13.18886 -13.14394 -12.97041 -12.82324 -12.75371 -12.57150 -12.52705 -12.38631 -12.18291 -11.99408 -11.88122 -11.82605 -11.52699 -11.31250 -11.24373 -11.16550 -11.05747 -10.65532 -10.24861 -9.68795 -8.85427 -7.82917 -5.16708 0.11779 0.60574 1.04720 1.47171 1.49207 1.57904 1.87822 2.19561 2.51945 3.09580 3.26552 3.34918 3.46283 3.55071 3.65485 3.69931 3.78788 3.81510 3.89519 3.98099 4.10706 4.26485 4.31540 4.38917 4.43669 4.60556 4.61288 4.62535 4.63795 4.69793 4.71947 4.73522 4.75838 4.84430 4.89112 4.91335 4.99462 5.04946 5.07802 5.15584 5.18696 5.21024 5.24386 5.39867 5.42578 5.50098 5.57964 5.67918 5.78793 6.21699 6.46619 6.82261 7.09158 7.12558 7.80404 8.46378 9.28309 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023677 B = 0.002214 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.313979 B =12645.829882 C =13061.084930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.132 3.868 3 C -0.128 4.128 4 C 0.620 3.380 5 O -0.563 6.563 6 N -0.608 5.608 7 C 0.106 3.894 8 C -0.106 4.106 9 C -0.074 4.074 10 C -0.116 4.116 11 C 0.191 3.809 12 N -0.624 5.624 13 C -0.236 4.236 14 H 0.085 0.915 15 C -0.069 4.069 16 N -0.952 5.952 17 Si 0.977 3.023 18 H -0.288 1.288 19 H -0.298 1.298 20 H -0.266 1.266 21 C 0.149 3.851 22 C 0.132 3.868 23 N -0.222 5.222 24 N -0.086 5.086 25 N -0.345 5.345 26 C 0.132 3.868 27 C -0.160 4.160 28 C -0.159 4.159 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.011 0.989 39 H 0.001 0.999 40 H 0.245 0.755 41 H 0.053 0.947 42 H 0.029 0.971 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.055 0.945 47 H 0.113 0.887 48 H 0.056 0.944 49 H 0.059 0.941 50 H 0.112 0.888 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.379 -28.259 11.333 32.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.007 4.007 3 C -0.268 4.268 4 C 0.408 3.592 5 O -0.443 6.443 6 N -0.340 5.340 7 C -0.017 4.017 8 C -0.144 4.144 9 C -0.076 4.076 10 C -0.155 4.155 11 C 0.066 3.934 12 N -0.350 5.350 13 C -0.365 4.365 14 H 0.103 0.897 15 C -0.262 4.262 16 N -0.602 5.602 17 Si 0.805 3.195 18 H -0.215 1.215 19 H -0.225 1.225 20 H -0.190 1.190 21 C 0.023 3.977 22 C 0.009 3.991 23 N -0.094 5.094 24 N -0.065 5.065 25 N -0.132 5.132 26 C 0.033 3.967 27 C -0.218 4.218 28 C -0.217 4.217 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.029 0.971 39 H 0.019 0.981 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.160 0.840 46 H 0.074 0.926 47 H 0.131 0.869 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.131 0.869 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.474 -28.546 11.210 32.407 hybrid contribution 0.165 1.405 -0.731 1.592 sum -10.309 -27.141 10.478 30.866 Atomic orbital electron populations 1.20836 0.82408 1.06283 1.05636 1.22315 0.97432 0.85731 0.95261 1.21120 0.89739 0.95029 1.20886 1.16486 0.84267 0.82421 0.75979 1.90731 1.16039 1.83815 1.53665 1.48836 1.07877 1.06204 1.71038 1.22791 0.77993 1.00525 1.00382 1.22245 0.97671 0.94657 0.99844 1.21577 0.95502 0.95224 0.95261 1.22654 0.98757 0.98282 0.95771 1.20878 0.92584 0.91260 0.88650 1.44812 1.49598 1.38836 1.01754 1.19468 1.15150 1.08624 0.93268 0.89671 1.25668 1.02459 1.02873 0.95158 1.70213 1.44722 1.48430 0.96795 0.85078 0.79094 0.78160 0.77149 1.21511 1.22481 1.19027 1.21627 0.96391 0.90354 0.89284 1.22119 0.98539 0.78318 1.00076 1.74569 1.19494 1.04589 1.10796 1.81843 0.98196 1.03042 1.23431 1.50966 1.05151 1.08498 1.48557 1.22204 1.02454 0.73065 0.98999 1.22167 1.02018 1.02512 0.95078 1.22165 1.02040 1.02497 0.94985 0.87905 0.87011 0.88613 0.87993 0.89699 0.92301 0.90298 0.91453 0.91647 0.97109 0.98117 0.94572 0.92867 0.95327 0.88992 0.90115 0.83955 0.92552 0.86857 0.92462 0.92167 0.86901 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.41 71.24 0.67 -0.48 16 2 C 0.13 2.59 7.02 41.72 0.29 2.88 16 3 C -0.13 -3.44 6.87 40.82 0.28 -3.16 16 4 C 0.62 18.82 7.91 86.69 0.69 19.51 16 5 O -0.56 -18.48 15.00 -4.02 -0.06 -18.54 16 6 N -0.61 -18.11 3.33 -812.45 -2.71 -20.81 16 7 C 0.11 2.96 6.68 86.63 0.58 3.53 16 8 C -0.11 -3.46 6.28 31.15 0.20 -3.26 16 9 C -0.07 -2.56 0.82 -51.67 -0.04 -2.60 16 10 C -0.12 -4.60 5.83 31.37 0.18 -4.42 16 11 C 0.19 9.85 5.34 86.80 0.46 10.31 16 12 N -0.62 -32.38 3.41 -692.38 -2.36 -34.74 16 13 C -0.24 -13.35 10.27 84.03 0.86 -12.48 16 14 H 0.09 4.56 7.84 -2.91 -0.02 4.54 16 15 C -0.07 -4.00 5.48 84.86 0.46 -3.53 16 16 N -0.95 -58.89 10.35 21.65 0.22 -58.66 16 17 Si 0.98 46.62 29.56 68.60 2.03 48.65 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 C 0.15 5.97 6.07 86.47 0.52 6.50 16 22 C 0.13 3.93 6.19 85.99 0.53 4.46 16 23 N -0.22 -6.21 9.35 -49.99 -0.47 -6.68 16 24 N -0.09 -2.12 13.67 37.02 0.51 -1.62 16 25 N -0.34 -5.97 3.28 -313.37 -1.03 -7.00 16 26 C 0.13 1.01 3.68 44.99 0.17 1.18 16 27 C -0.16 -1.13 9.47 71.98 0.68 -0.45 16 28 C -0.16 -0.99 9.47 71.98 0.68 -0.30 16 29 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.11 0.49 7.18 -2.39 -0.02 0.47 16 31 H 0.10 1.62 6.43 -2.39 -0.02 1.61 16 32 H 0.10 2.94 5.47 -2.38 -0.01 2.93 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 2.07 7.51 -2.39 -0.02 2.05 16 35 H 0.08 2.66 7.55 -2.38 -0.02 2.64 16 36 H 0.07 2.52 7.73 -2.39 -0.02 2.50 16 37 H 0.06 2.49 7.71 -2.39 -0.02 2.47 16 38 H 0.01 0.62 7.30 -2.39 -0.02 0.60 16 39 H 0.00 0.03 7.60 -2.39 -0.02 0.02 16 40 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 41 H 0.05 2.03 7.76 -2.39 -0.02 2.01 16 42 H 0.03 1.12 8.06 -2.38 -0.02 1.11 16 43 H 0.09 2.42 7.95 -2.39 -0.02 2.41 16 44 H 0.08 2.50 7.36 -2.39 -0.02 2.48 16 45 H 0.14 0.18 6.79 -2.39 -0.02 0.16 16 46 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 50 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 51 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -76.37 399.74 4.28 -72.09 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.93 Total: 9.64 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 7.22 Total: 17.68 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -5.83 Total: -129.51 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.06 Total: -18.54 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -76.37 4.28 -72.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041761460.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.587 kcal (2) G-P(sol) polarization free energy of solvation -76.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds