Wall clock time and date at job start Wed Apr 1 2020 05:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36598 * 126.58306 * 2 1 4 4 C 1.47530 * 125.76765 * 359.97438 * 3 2 1 5 5 O 1.21591 * 119.99750 * 354.71694 * 4 3 2 6 6 N 1.34770 * 119.99861 * 174.72406 * 4 3 2 7 7 C 1.47155 * 121.22298 * 5.55233 * 6 4 3 8 8 C 1.52828 * 107.98329 * 237.29632 * 7 6 4 9 9 C 1.53091 * 110.58220 * 302.65754 * 8 7 6 10 10 H 1.09004 * 112.48670 * 289.43612 * 9 8 7 11 11 C 1.56027 * 106.39595 * 164.56575 * 9 8 7 12 12 C 1.54509 * 102.60750 * 281.61951 * 11 9 8 13 13 N 1.47432 * 107.14698 * 337.15387 * 12 11 9 14 14 C 1.36936 * 126.05821 * 178.37827 * 13 12 11 15 15 H 1.08000 * 120.00274 * 179.97438 * 14 13 12 16 16 C 1.38822 * 120.00031 * 359.97438 * 14 13 12 17 17 N 1.31616 * 119.99541 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99964 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47385 * 59.99635 * 18 16 14 20 20 H 1.48498 * 109.46756 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46822 * 299.99526 * 18 16 14 22 22 C 1.46463 * 107.88351 * 358.37356 * 13 12 11 23 23 H 1.09001 * 108.42424 * 270.10867 * 22 13 12 24 24 C 1.46763 * 121.21687 * 185.28188 * 6 4 3 25 25 N 1.34400 * 108.46221 * 179.83434 * 3 2 1 26 26 N 1.28760 * 109.52147 * 0.43904 * 25 3 2 27 27 N 1.34813 * 126.58019 * 180.31427 * 2 1 3 28 28 C 1.46499 * 126.59561 * 359.97438 * 27 2 1 29 29 C 1.53001 * 109.46850 * 119.99853 * 28 27 2 30 30 C 1.52994 * 109.47407 * 240.00129 * 28 27 2 31 31 H 1.09002 * 109.47135 * 269.69034 * 1 2 3 32 32 H 1.08999 * 109.46850 * 29.68315 * 1 2 3 33 33 H 1.08992 * 109.47087 * 149.68801 * 1 2 3 34 34 H 1.09000 * 109.75445 * 356.91911 * 7 6 4 35 35 H 1.08998 * 109.75828 * 117.62025 * 7 6 4 36 36 H 1.09002 * 109.25560 * 62.93843 * 8 7 6 37 37 H 1.09002 * 109.25465 * 182.40629 * 8 7 6 38 38 H 1.09000 * 110.78220 * 39.89363 * 11 9 8 39 39 H 1.08996 * 110.78646 * 163.34398 * 11 9 8 40 40 H 1.09000 * 109.90279 * 217.76860 * 12 11 9 41 41 H 1.09000 * 110.04966 * 96.61495 * 12 11 9 42 42 H 0.97006 * 119.99697 * 179.97438 * 17 16 14 43 43 H 1.09008 * 109.22353 * 247.78050 * 24 6 4 44 44 H 1.09000 * 109.22841 * 7.13750 * 24 6 4 45 45 H 1.09003 * 109.46691 * 0.02562 * 28 27 2 46 46 H 1.09003 * 109.46884 * 60.00841 * 29 28 27 47 47 H 1.09001 * 109.46700 * 180.02562 * 29 28 27 48 48 H 1.08993 * 109.47519 * 300.00546 * 29 28 27 49 49 H 1.09002 * 109.47237 * 60.00062 * 30 28 27 50 50 H 1.09001 * 109.47442 * 179.97438 * 30 28 27 51 51 H 1.09003 * 109.47559 * 299.99914 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 -0.0005 5 8 0.6903 2.7641 -0.0980 6 7 2.7770 3.4972 0.1068 7 6 4.2220 3.2189 0.1045 8 6 4.8134 3.7840 1.3955 9 6 4.5223 5.2826 1.5099 10 1 5.0914 5.8739 0.7925 11 6 4.7979 5.6726 2.9953 12 6 3.5275 5.1703 3.7172 13 7 2.4575 5.0871 2.7064 14 6 1.1762 4.6549 2.9227 15 1 0.4683 4.6345 2.1074 16 6 0.7873 4.2429 4.1901 17 7 1.6503 4.2673 5.1835 18 14 -0.9602 3.6525 4.4849 19 1 -1.2367 2.4745 3.6241 20 1 -1.1201 3.2724 5.9115 21 1 -1.9132 4.7422 4.1538 22 6 3.0076 5.5489 1.4300 23 1 2.8504 6.6250 1.3562 24 6 2.3555 4.8981 0.2245 25 7 3.5984 0.6789 0.0037 26 7 3.6299 -0.6083 -0.0033 27 7 2.3104 -1.0826 -0.0059 28 6 1.8864 -2.4848 -0.0131 29 6 2.4287 -3.1752 -1.2662 30 6 2.4295 -3.1883 1.2322 31 1 -0.3633 -0.0056 1.0277 32 1 -0.3633 0.8928 -0.5089 33 1 -0.3633 -0.8871 -0.5186 34 1 4.3898 2.1427 0.0624 35 1 4.6882 3.6984 -0.7562 36 1 4.3746 3.2665 2.2486 37 1 5.8920 3.6268 1.3957 38 1 5.6841 5.1613 3.3714 39 1 4.9001 6.7528 3.0991 40 1 3.2439 5.8727 4.5010 41 1 3.7076 4.1858 4.1489 42 1 1.3784 3.9797 6.0692 43 1 2.6440 5.4367 -0.6782 44 1 1.2719 4.9389 0.3351 45 1 0.7975 -2.5351 -0.0134 46 1 3.5176 -3.1249 -1.2662 47 1 2.1128 -4.2184 -1.2717 48 1 2.0418 -2.6740 -2.1534 49 1 2.0431 -2.6965 2.1250 50 1 2.1136 -4.2315 1.2271 51 1 3.5184 -3.1380 1.2322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042292372.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:15 Heat of formation + Delta-G solvation = 101.356276 kcal Electronic energy + Delta-G solvation = -33189.459984 eV Core-core repulsion = 29127.301094 eV Total energy + Delta-G solvation = -4062.158891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.20620 -39.61144 -37.84760 -36.53931 -34.88143 -32.99069 -32.65748 -31.37628 -30.68569 -29.10858 -28.23411 -27.71327 -27.56800 -24.65403 -24.13992 -24.02513 -22.28904 -22.13831 -20.31177 -19.87127 -19.60075 -18.21818 -17.24084 -16.46404 -16.15500 -16.05569 -15.48893 -14.88764 -14.76449 -14.53028 -14.19662 -14.01031 -13.79518 -13.60646 -13.49284 -13.31338 -13.02115 -12.84955 -12.77236 -12.63674 -12.57311 -12.41398 -11.89892 -11.86576 -11.83224 -11.64770 -11.37469 -11.28234 -11.19840 -10.81459 -10.69884 -10.68601 -10.32973 -10.14225 -10.04862 -9.73680 -9.66700 -9.54433 -9.43419 -9.10020 -8.92324 -8.45775 -7.93236 -6.67906 -5.57203 -2.88333 1.26486 1.98350 2.01519 3.47675 3.49737 3.52382 3.56125 3.84024 4.08086 4.27591 4.43280 4.54852 4.62514 4.66483 4.85465 5.03578 5.11936 5.18069 5.26135 5.31212 5.39027 5.42186 5.52467 5.53460 5.59947 5.66081 5.72015 5.75526 5.76547 5.86410 5.90256 5.97617 6.03023 6.11779 6.16185 6.29656 6.39602 6.42518 6.52636 6.56839 6.69423 6.72556 6.77438 6.87690 7.14804 7.29178 7.71793 7.73689 7.96286 7.98381 8.17189 8.38358 8.74236 9.36294 9.97618 10.63625 11.55223 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010569 B = 0.004539 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.693773 B = 6167.501458 C = 7402.291773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.121 3.879 3 C -0.086 4.086 4 C 0.610 3.390 5 O -0.540 6.540 6 N -0.576 5.576 7 C 0.073 3.927 8 C -0.117 4.117 9 C -0.102 4.102 10 H 0.074 0.926 11 C -0.143 4.143 12 C 0.180 3.820 13 N -0.588 5.588 14 C -0.210 4.210 15 H 0.081 0.919 16 C -0.010 4.010 17 N -0.926 5.926 18 Si 0.904 3.096 19 H -0.286 1.286 20 H -0.294 1.294 21 H -0.286 1.286 22 C 0.155 3.845 23 H 0.026 0.974 24 C 0.114 3.886 25 N -0.204 5.204 26 N -0.073 5.073 27 N -0.357 5.357 28 C 0.144 3.856 29 C -0.161 4.161 30 C -0.163 4.163 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.039 0.961 41 H 0.044 0.956 42 H 0.249 0.751 43 H 0.055 0.945 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.066 0.934 50 H 0.080 0.920 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.619 -12.605 -12.694 18.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.016 4.016 3 C -0.225 4.225 4 C 0.396 3.604 5 O -0.417 6.417 6 N -0.306 5.306 7 C -0.051 4.051 8 C -0.155 4.155 9 C -0.122 4.122 10 H 0.092 0.908 11 C -0.182 4.182 12 C 0.055 3.945 13 N -0.313 5.313 14 C -0.339 4.339 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.574 5.574 18 Si 0.736 3.264 19 H -0.212 1.212 20 H -0.220 1.220 21 H -0.213 1.213 22 C 0.046 3.954 23 H 0.043 0.957 24 C -0.010 4.010 25 N -0.076 5.076 26 N -0.051 5.051 27 N -0.145 5.145 28 C 0.043 3.957 29 C -0.219 4.219 30 C -0.221 4.221 31 H 0.110 0.890 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.153 0.847 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.112 0.888 45 H 0.126 0.874 46 H 0.093 0.907 47 H 0.099 0.901 48 H 0.082 0.918 49 H 0.085 0.915 50 H 0.099 0.901 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.319 -12.999 -12.538 18.569 hybrid contribution -1.743 -0.130 0.505 1.819 sum 2.576 -13.129 -12.033 17.995 Atomic orbital electron populations 1.20738 0.84937 1.05088 1.04846 1.21863 0.96182 0.86252 0.97298 1.21297 0.88624 0.95683 1.16914 1.16556 0.85171 0.82135 0.76528 1.90709 1.16074 1.83100 1.51797 1.47532 1.06488 1.06374 1.70254 1.22689 0.79437 1.05789 0.97195 1.21758 0.99291 0.95751 0.98718 1.22395 0.96893 0.95978 0.96933 0.90779 1.23148 0.99890 0.99649 0.95474 1.21197 0.83686 0.99379 0.90240 1.44267 1.08414 1.76084 1.02571 1.18998 0.85631 1.34821 0.94405 0.90174 1.24699 0.97673 1.02166 0.95968 1.69959 1.32970 1.54081 1.00434 0.86286 0.84815 0.78912 0.76424 1.21239 1.21984 1.21257 1.20778 0.91216 0.95749 0.87628 0.95689 1.21555 1.02296 0.79994 0.97112 1.74069 1.18818 1.03446 1.11249 1.81862 0.96545 1.03849 1.22890 1.50511 1.06283 1.07015 1.50712 1.21600 1.00448 0.75535 0.98146 1.22149 1.03180 1.00758 0.95822 1.22156 1.03197 1.00648 0.96097 0.88987 0.86672 0.91126 0.84735 0.92627 0.90501 0.92328 0.92364 0.92861 0.94243 0.93773 0.94113 0.92637 0.88759 0.87408 0.90721 0.90092 0.91802 0.91528 0.90087 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 9.48 36.00 0.34 -0.89 16 2 C 0.12 1.83 7.02 -81.88 -0.57 1.26 16 3 C -0.09 -1.56 6.79 -83.55 -0.57 -2.13 16 4 C 0.61 12.48 7.70 -12.48 -0.10 12.39 16 5 O -0.54 -11.96 14.17 5.29 0.07 -11.89 16 6 N -0.58 -11.23 2.96 -175.05 -0.52 -11.74 16 7 C 0.07 1.24 6.33 -3.77 -0.02 1.21 16 8 C -0.12 -2.09 5.04 -26.77 -0.13 -2.22 16 9 C -0.10 -1.83 3.68 -88.43 -0.33 -2.16 16 10 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 11 C -0.14 -2.75 6.33 -24.32 -0.15 -2.91 16 12 C 0.18 4.45 4.61 -2.74 -0.01 4.44 16 13 N -0.59 -15.03 3.20 -164.16 -0.52 -15.56 16 14 C -0.21 -5.96 9.71 -15.06 -0.15 -6.11 16 15 H 0.08 2.30 6.53 -52.49 -0.34 1.96 16 16 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 17 N -0.93 -27.96 10.38 55.49 0.58 -27.39 16 18 Si 0.90 23.29 29.55 -169.99 -5.02 18.27 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 C 0.15 3.24 2.97 -68.08 -0.20 3.03 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 24 C 0.11 2.24 5.70 -4.55 -0.03 2.21 16 25 N -0.20 -3.55 8.67 32.85 0.28 -3.27 16 26 N -0.07 -1.14 13.67 60.35 0.82 -0.32 16 27 N -0.36 -4.69 3.28 -50.41 -0.17 -4.85 16 28 C 0.14 1.23 3.68 -67.93 -0.25 0.98 16 29 C -0.16 -1.09 9.47 37.16 0.35 -0.74 16 30 C -0.16 -1.30 9.47 37.15 0.35 -0.94 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.11 1.65 6.31 -51.93 -0.33 1.32 16 33 H 0.07 0.60 7.18 -51.93 -0.37 0.23 16 34 H 0.14 2.34 3.68 -120.42 -0.44 1.90 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.69 6.86 -51.93 -0.36 1.33 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.03 7.97 -51.93 -0.41 0.61 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.04 1.09 7.57 -51.93 -0.39 0.69 16 41 H 0.04 1.23 7.04 -51.93 -0.37 0.86 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 44 H 0.09 2.09 5.60 -51.93 -0.29 1.80 16 45 H 0.11 0.70 6.79 -51.93 -0.35 0.35 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -34.11 390.35 -8.44 -42.55 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.29 Total: 1.27 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -1.56 Total: 7.04 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: 0.48 Total: -63.13 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.07 Total: -11.89 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.27 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.11 -8.44 -42.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042292372.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.910 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds