Wall clock time and date at job start Wed Apr 1 2020 05:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36596 * 126.58237 * 2 1 4 4 C 1.47523 * 125.76820 * 0.03700 * 3 2 1 5 5 O 1.21593 * 120.00316 * 353.27645 * 4 3 2 6 6 N 1.34785 * 120.00066 * 173.55942 * 4 3 2 7 7 C 1.46589 * 119.75265 * 172.50051 * 6 4 3 8 8 C 1.53889 * 110.70960 * 132.26063 * 7 6 4 9 9 C 1.51972 * 107.28835 * 51.81125 * 8 7 6 10 10 H 1.09002 * 111.01862 * 57.32959 * 9 8 7 11 11 C 1.53701 * 115.00354 * 184.55278 * 9 8 7 12 12 C 1.55306 * 101.81451 * 153.45592 * 11 9 8 13 13 N 1.48154 * 107.04393 * 337.55658 * 12 11 9 14 14 C 1.36932 * 126.39882 * 175.00078 * 13 12 11 15 15 H 1.08003 * 120.00078 * 180.02562 * 14 13 12 16 16 C 1.38813 * 119.99754 * 0.02562 * 14 13 12 17 17 N 1.31615 * 120.00140 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99845 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47334 * 60.00120 * 18 16 14 20 20 H 1.48500 * 109.47127 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47238 * 300.00117 * 18 16 14 22 22 C 1.45514 * 107.20443 * 354.99925 * 13 12 11 23 23 H 1.08996 * 109.56360 * 273.37040 * 22 13 12 24 24 C 1.47795 * 119.74953 * 352.22723 * 6 4 3 25 25 N 1.34403 * 108.46289 * 179.76746 * 3 2 1 26 26 N 1.28763 * 109.52156 * 0.22870 * 25 3 2 27 27 N 1.34816 * 126.58146 * 180.15914 * 2 1 3 28 28 C 1.46503 * 126.59166 * 359.97438 * 27 2 1 29 29 C 1.53001 * 109.46849 * 120.26892 * 28 27 2 30 30 C 1.53000 * 109.46808 * 240.26648 * 28 27 2 31 31 H 1.09003 * 109.47092 * 90.02382 * 1 2 3 32 32 H 1.08997 * 109.47206 * 210.02222 * 1 2 3 33 33 H 1.09000 * 109.47389 * 330.02618 * 1 2 3 34 34 H 1.09001 * 109.22819 * 252.58189 * 7 6 4 35 35 H 1.09003 * 109.22890 * 11.94478 * 7 6 4 36 36 H 1.09000 * 109.88694 * 171.25254 * 8 7 6 37 37 H 1.08998 * 109.89158 * 292.28380 * 8 7 6 38 38 H 1.09000 * 110.95745 * 271.58493 * 11 9 8 39 39 H 1.08999 * 110.96308 * 35.29377 * 11 9 8 40 40 H 1.09005 * 109.91514 * 96.90550 * 12 11 9 41 41 H 1.08998 * 109.92144 * 218.00466 * 12 11 9 42 42 H 0.97002 * 120.00058 * 180.02562 * 17 16 14 43 43 H 1.09004 * 110.06255 * 350.47558 * 24 6 4 44 44 H 1.09005 * 110.06300 * 112.03206 * 24 6 4 45 45 H 1.08992 * 109.47072 * 0.26836 * 28 27 2 46 46 H 1.08998 * 109.47370 * 299.99622 * 29 28 27 47 47 H 1.09006 * 109.46884 * 60.00287 * 29 28 27 48 48 H 1.09008 * 109.46714 * 179.97438 * 29 28 27 49 49 H 1.09007 * 109.47080 * 60.00401 * 30 28 27 50 50 H 1.09004 * 109.47034 * 179.97438 * 30 28 27 51 51 H 1.08992 * 109.47457 * 299.99952 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0008 5 8 0.6928 2.7650 -0.1218 6 7 2.7748 3.4965 0.1316 7 6 2.3500 4.8898 -0.0328 8 6 2.8833 5.7608 1.1184 9 6 4.3797 5.5136 1.2159 10 1 4.8753 5.7374 0.2712 11 6 5.0795 6.2186 2.3888 12 6 6.2979 5.2882 2.6377 13 7 5.9512 3.9601 2.0801 14 6 6.7778 2.8714 2.0003 15 1 6.4157 1.9487 1.5712 16 6 8.0811 2.9536 2.4709 17 7 8.5222 4.0778 2.9942 18 14 9.2091 1.4685 2.3614 19 1 9.3655 1.0695 0.9396 20 1 10.5376 1.8131 2.9284 21 1 8.6206 0.3422 3.1297 22 6 4.5681 4.0288 1.6330 23 1 3.9036 3.7967 2.4652 24 6 4.1824 3.1736 0.4458 25 7 3.5984 0.6789 0.0052 26 7 3.6299 -0.6084 0.0035 27 7 2.3104 -1.0826 -0.0030 28 6 1.8863 -2.4849 -0.0064 29 6 2.4342 -3.1803 -1.2542 30 6 2.4240 -3.1832 1.2443 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 2.7322 5.2723 -0.9792 35 1 1.2609 4.9344 -0.0419 36 1 2.6943 6.8130 0.9055 37 1 2.3979 5.4785 2.0526 38 1 5.4048 7.2192 2.1041 39 1 4.4313 6.2557 3.2643 40 1 7.1778 5.6853 2.1316 41 1 6.4902 5.2064 3.7075 42 1 9.4331 4.1354 3.3227 43 1 4.2760 2.1179 0.7005 44 1 4.8197 3.4118 -0.4059 45 1 0.7976 -2.5352 -0.0109 46 1 2.0512 -2.6829 -2.1452 47 1 3.5231 -3.1301 -1.2496 48 1 2.1190 -4.2239 -1.2564 49 1 2.0336 -2.6877 2.1333 50 1 2.1080 -4.2265 1.2420 51 1 3.5127 -3.1330 1.2488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042292373.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:18 Heat of formation + Delta-G solvation = 78.507746 kcal Electronic energy + Delta-G solvation = -32412.770465 eV Core-core repulsion = 28349.620787 eV Total energy + Delta-G solvation = -4063.149678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.40530 -41.26483 -39.62398 -37.42535 -36.71377 -34.75880 -33.98920 -33.20282 -31.90166 -30.82839 -30.10282 -28.78088 -28.29799 -26.55969 -25.68234 -24.89894 -24.19154 -22.78066 -21.80113 -21.37502 -21.19561 -20.21558 -18.59138 -18.37844 -17.37997 -17.25484 -17.09012 -16.71944 -16.18088 -15.81955 -15.71017 -15.49330 -15.31966 -15.09973 -14.76112 -14.65311 -14.28398 -14.00788 -13.95283 -13.80318 -13.73747 -13.49200 -13.23060 -13.21543 -13.12177 -13.08760 -12.84702 -12.71188 -12.54724 -12.48670 -12.36660 -12.09737 -12.03692 -11.92763 -11.66861 -11.50741 -11.31632 -11.24732 -11.12137 -10.71186 -10.56115 -10.23638 -9.63859 -8.87812 -7.82859 -5.17003 0.12718 0.58342 1.08001 1.42996 1.46071 1.52517 1.90444 2.17968 2.50973 3.07995 3.26053 3.35391 3.46890 3.57629 3.65932 3.79469 3.85442 3.96155 3.97752 4.03630 4.10545 4.26238 4.30981 4.38119 4.46977 4.56656 4.60316 4.62244 4.63181 4.65237 4.71530 4.73238 4.79467 4.83768 4.90322 4.95962 5.05661 5.10680 5.15176 5.16480 5.16954 5.20951 5.32321 5.46993 5.55018 5.58461 5.65408 5.69877 5.80090 6.20155 6.25987 6.84995 7.10606 7.11698 7.79809 8.47099 9.28340 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009100 B = 0.004380 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.306638 B = 6391.011782 C = 9092.074220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.133 3.867 3 C -0.137 4.137 4 C 0.603 3.397 5 O -0.555 6.555 6 N -0.593 5.593 7 C 0.109 3.891 8 C -0.106 4.106 9 C -0.099 4.099 10 H 0.074 0.926 11 C -0.122 4.122 12 C 0.182 3.818 13 N -0.610 5.610 14 C -0.228 4.228 15 H 0.076 0.924 16 C -0.062 4.062 17 N -0.950 5.950 18 Si 0.967 3.033 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.150 3.850 23 H 0.005 0.995 24 C 0.106 3.894 25 N -0.227 5.227 26 N -0.095 5.095 27 N -0.345 5.345 28 C 0.132 3.868 29 C -0.158 4.158 30 C -0.162 4.162 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.023 0.977 41 H 0.001 0.999 42 H 0.246 0.754 43 H 0.114 0.886 44 H 0.055 0.945 45 H 0.149 0.851 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.115 0.885 49 H 0.057 0.943 50 H 0.116 0.884 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.239 -10.270 -7.916 24.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.007 4.007 3 C -0.277 4.277 4 C 0.390 3.610 5 O -0.435 6.435 6 N -0.325 5.325 7 C -0.012 4.012 8 C -0.144 4.144 9 C -0.119 4.119 10 H 0.093 0.907 11 C -0.160 4.160 12 C 0.058 3.942 13 N -0.335 5.335 14 C -0.357 4.357 15 H 0.094 0.906 16 C -0.254 4.254 17 N -0.599 5.599 18 Si 0.796 3.204 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.042 3.958 23 H 0.022 0.978 24 C -0.018 4.018 25 N -0.099 5.099 26 N -0.073 5.073 27 N -0.132 5.132 28 C 0.033 3.967 29 C -0.216 4.216 30 C -0.220 4.220 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.019 0.981 42 H 0.055 0.945 43 H 0.131 0.869 44 H 0.073 0.927 45 H 0.166 0.834 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.134 0.866 49 H 0.076 0.924 50 H 0.135 0.865 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.133 -10.654 -7.931 24.119 hybrid contribution 0.818 -0.422 0.350 0.985 sum -19.315 -11.076 -7.581 23.520 Atomic orbital electron populations 1.20823 0.81740 1.06147 1.05912 1.22415 0.97599 0.85466 0.95198 1.21420 0.89439 0.96040 1.20771 1.16935 0.84960 0.83050 0.76066 1.90679 1.15859 1.83771 1.53176 1.48072 1.09101 1.06966 1.68316 1.21807 1.01524 0.78849 0.98996 1.21752 0.93061 1.01183 0.98421 1.22198 0.96368 0.94921 0.98380 0.90743 1.22609 0.96840 0.98623 0.97950 1.21340 0.94220 0.83650 0.95039 1.44411 1.08620 1.09994 1.70502 1.19275 0.92554 0.90697 1.33197 0.90602 1.25490 0.98643 0.99782 1.01525 1.70140 1.16347 1.26097 1.47343 0.85316 0.78090 0.79151 0.77842 1.20485 1.21606 1.20904 1.21000 0.85936 0.95499 0.93412 0.97807 1.22125 0.79679 1.03036 0.96996 1.74600 1.19815 1.04415 1.11047 1.81933 0.98482 1.03386 1.23537 1.51043 1.05096 1.08666 1.48381 1.22222 1.02592 0.73057 0.98829 1.22159 1.01762 1.02599 0.95098 1.22187 1.01805 1.02699 0.95284 0.87242 0.87133 0.88668 0.90426 0.88166 0.87163 0.91837 0.89622 0.91281 0.95892 0.98118 0.94475 0.86876 0.92694 0.83368 0.91983 0.93067 0.86649 0.92432 0.86535 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 9.34 71.23 0.67 -0.64 16 2 C 0.13 3.27 7.02 41.71 0.29 3.56 16 3 C -0.14 -4.57 6.68 40.82 0.27 -4.30 16 4 C 0.60 20.59 7.65 86.69 0.66 21.25 16 5 O -0.56 -18.49 14.15 -4.01 -0.06 -18.55 16 6 N -0.59 -20.48 3.02 -823.43 -2.48 -22.96 16 7 C 0.11 3.03 6.36 86.66 0.55 3.58 16 8 C -0.11 -2.84 5.72 30.56 0.17 -2.66 16 9 C -0.10 -3.50 2.61 -10.08 -0.03 -3.53 16 10 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 11 C -0.12 -4.57 6.54 31.62 0.21 -4.36 16 12 C 0.18 9.35 5.45 86.85 0.47 9.82 16 13 N -0.61 -32.97 3.35 -670.12 -2.24 -35.21 16 14 C -0.23 -13.48 9.88 84.03 0.83 -12.65 16 15 H 0.08 4.46 7.41 -2.91 -0.02 4.44 16 16 C -0.06 -3.67 5.49 84.86 0.47 -3.21 16 17 N -0.95 -59.08 10.43 21.65 0.23 -58.85 16 18 Si 0.97 48.57 29.55 68.60 2.03 50.60 16 19 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 20 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 21 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 22 C 0.15 6.60 2.74 45.44 0.12 6.73 16 23 H 0.00 0.21 7.93 -2.39 -0.02 0.19 16 24 C 0.11 4.36 5.21 85.58 0.45 4.80 16 25 N -0.23 -8.67 8.73 -49.99 -0.44 -9.11 16 26 N -0.09 -3.24 13.67 37.02 0.51 -2.73 16 27 N -0.34 -8.18 3.28 -313.39 -1.03 -9.21 16 28 C 0.13 1.70 3.68 44.99 0.17 1.87 16 29 C -0.16 -1.81 9.47 71.98 0.68 -1.13 16 30 C -0.16 -2.10 9.47 71.98 0.68 -1.42 16 31 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.11 0.79 7.19 -2.39 -0.02 0.77 16 33 H 0.09 1.79 6.59 -2.39 -0.02 1.77 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.10 2.59 6.92 -2.39 -0.02 2.58 16 36 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.06 1.78 7.99 -2.39 -0.02 1.76 16 38 H 0.09 2.76 8.14 -2.39 -0.02 2.75 16 39 H 0.07 2.40 8.12 -2.39 -0.02 2.39 16 40 H 0.02 1.30 7.21 -2.38 -0.02 1.28 16 41 H 0.00 0.03 7.77 -2.39 -0.02 0.01 16 42 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.11 5.10 3.96 -34.79 -0.14 4.97 16 44 H 0.05 2.37 8.14 -2.38 -0.02 2.36 16 45 H 0.15 0.74 6.79 -2.39 -0.02 0.73 16 46 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 48 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 49 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 50 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -79.42 394.70 3.98 -75.44 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.80 Total: 12.87 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 6.67 Total: 17.71 kcal Atomic # 7 Polarization: -132.61 SS G_CDS: -5.46 Total: -138.07 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.06 Total: -18.55 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -79.42 3.98 -75.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042292373.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.952 kcal (2) G-P(sol) polarization free energy of solvation -79.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds