Wall clock time and date at job start Wed Apr 1 2020 04:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.45748 * 2 1 4 4 C 1.34780 * 119.99433 * 60.31278 * 3 2 1 5 5 O 1.21285 * 120.00151 * 359.71645 * 4 3 2 6 6 C 1.50706 * 120.00088 * 179.72101 * 4 3 2 7 7 H 1.08994 * 107.87629 * 303.45043 * 6 4 3 8 8 C 1.50961 * 108.02466 * 59.99616 * 6 4 3 9 9 C 1.53677 * 110.96001 * 194.29823 * 8 6 4 10 10 C 1.51886 * 106.89444 * 280.90860 * 9 8 6 11 11 N 1.29902 * 127.80763 * 245.11903 * 10 9 8 12 12 N 1.29037 * 109.22329 * 179.75312 * 11 10 9 13 13 C 1.30974 * 109.70472 * 0.06108 * 12 11 10 14 14 N 1.34595 * 124.57783 * 65.07881 * 10 9 8 15 15 C 1.47508 * 125.03088 * 0.52507 * 14 10 9 16 16 C 1.50860 * 108.03036 * 186.92800 * 6 4 3 17 17 C 1.53032 * 109.45479 * 119.97461 * 2 1 3 18 18 C 1.53184 * 109.31540 * 181.38029 * 17 2 1 19 19 N 1.46930 * 108.77676 * 305.36347 * 18 17 2 20 20 C 1.36939 * 120.62725 * 233.63382 * 19 18 17 21 21 H 1.08005 * 119.99708 * 152.60590 * 20 19 18 22 22 C 1.38807 * 120.00410 * 332.59840 * 20 19 18 23 23 N 1.31621 * 120.00013 * 159.37284 * 22 20 19 24 24 Si 1.86805 * 119.99931 * 339.37997 * 22 20 19 25 25 H 1.48499 * 109.47036 * 92.92510 * 24 22 20 26 26 H 1.48501 * 109.46836 * 212.92361 * 24 22 20 27 27 H 1.48494 * 109.46976 * 332.92263 * 24 22 20 28 28 C 1.46918 * 118.73776 * 53.60671 * 19 18 17 29 29 C 1.53045 * 109.45941 * 240.03746 * 2 1 3 30 30 H 1.08998 * 109.47577 * 59.99572 * 1 2 3 31 31 H 1.09005 * 109.46607 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46903 * 299.99001 * 1 2 3 33 33 H 0.96999 * 120.00990 * 240.02821 * 3 2 1 34 34 H 1.09000 * 109.18305 * 314.67484 * 8 6 4 35 35 H 1.08994 * 109.17878 * 73.96958 * 8 6 4 36 36 H 1.09006 * 109.96471 * 40.24987 * 9 8 6 37 37 H 1.08990 * 109.96754 * 161.46976 * 9 8 6 38 38 H 1.08003 * 126.60952 * 180.13497 * 13 12 11 39 39 H 1.08994 * 109.93354 * 53.42553 * 15 14 10 40 40 H 1.09001 * 109.92754 * 174.55308 * 15 14 10 41 41 H 1.09000 * 109.14909 * 285.99330 * 16 6 4 42 42 H 1.09005 * 109.14552 * 45.14398 * 16 6 4 43 43 H 1.09004 * 109.49722 * 301.32961 * 17 2 1 44 44 H 1.08999 * 109.50225 * 61.42260 * 17 2 1 45 45 H 1.09006 * 109.59051 * 185.57552 * 18 17 2 46 46 H 1.09000 * 109.58968 * 65.15203 * 18 17 2 47 47 H 0.97001 * 119.99665 * 180.02562 * 23 22 20 48 48 H 1.09004 * 109.58862 * 186.60814 * 28 19 18 49 49 H 1.08998 * 109.58792 * 66.18107 * 28 19 18 50 50 H 1.09004 * 109.49670 * 298.57873 * 29 2 1 51 51 H 1.08999 * 109.49934 * 58.63991 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6974 2.2092 1.0141 5 8 1.0006 1.8121 1.9240 6 6 2.2045 3.6284 1.0174 7 1 3.2920 3.5952 0.9526 8 6 1.6832 4.3136 -0.2227 9 6 2.4304 5.6321 -0.4774 10 6 1.8360 6.6653 0.4638 11 7 1.1679 7.7350 0.1526 12 7 0.8276 8.3527 1.2332 13 6 1.2703 7.6953 2.2758 14 7 1.9211 6.6144 1.8061 15 6 2.6109 5.5587 2.5713 16 6 1.8350 4.2532 2.3399 17 6 2.0397 -0.7209 1.2499 18 6 3.5712 -0.6890 1.2642 19 7 4.0677 -1.2492 -0.0001 20 6 4.9754 -2.2745 0.0000 21 1 5.0113 -2.9639 -0.8306 22 6 5.8494 -2.4278 1.0674 23 7 6.4255 -3.5911 1.2845 24 14 6.2079 -0.9829 2.1959 25 1 5.2789 -1.0169 3.3540 26 1 7.6083 -1.0701 2.6821 27 1 6.0214 0.2868 1.4488 28 6 3.5714 -0.6888 -1.2642 29 6 2.0399 -0.7207 -1.2502 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.5753 1.6990 -0.7276 34 1 1.8184 3.6540 -1.0799 35 1 0.6212 4.5234 -0.0962 36 1 3.4924 5.5046 -0.2674 37 1 2.2908 5.9451 -1.5120 38 1 1.1384 7.9676 3.3126 39 1 3.6352 5.4503 2.2148 40 1 2.6115 5.8090 3.6322 41 1 0.7661 4.4662 2.3485 42 1 2.0656 3.5530 3.1429 43 1 1.6571 -0.2209 2.1398 44 1 1.6975 -1.7557 1.2382 45 1 3.9414 -1.2850 2.0984 46 1 3.9143 0.3405 1.3675 47 1 7.0359 -3.6983 2.0307 48 1 3.9416 -1.2847 -2.0985 49 1 3.9144 0.3407 -1.3672 50 1 1.6976 -1.7555 -1.2386 51 1 1.6569 -0.2209 -2.1399 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045506362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:40 Heat of formation + Delta-G solvation = 67.459439 kcal Electronic energy + Delta-G solvation = -32591.098412 eV Core-core repulsion = 28527.469644 eV Total energy + Delta-G solvation = -4063.628768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.56217 -40.71643 -38.43075 -36.89151 -34.79514 -34.60537 -32.52266 -32.04741 -31.14768 -30.53499 -30.05467 -27.80629 -27.28899 -24.71370 -24.02899 -22.91255 -22.75256 -22.59279 -21.17783 -20.57532 -20.14971 -19.00738 -17.92755 -17.52970 -16.91307 -16.27853 -15.52989 -15.47215 -15.31112 -15.20816 -15.04737 -14.46156 -14.32211 -14.17155 -13.82826 -13.75846 -13.38351 -13.27191 -13.09404 -12.82268 -12.49514 -12.41617 -12.16959 -12.08646 -12.05403 -11.79746 -11.69648 -11.45367 -11.39967 -11.36605 -11.19626 -10.89786 -10.64404 -10.59118 -10.45731 -10.32111 -10.06185 -9.83061 -9.57689 -9.47486 -9.29338 -8.93605 -8.63477 -7.04434 -6.01612 -3.37586 1.59822 2.18076 2.60261 2.66406 3.12058 3.25956 3.38611 3.42184 3.81088 4.04911 4.14717 4.19438 4.37304 4.44544 4.45899 4.59251 4.68323 4.84933 4.88642 4.91559 5.01778 5.02698 5.13535 5.18937 5.23891 5.32622 5.38571 5.43531 5.48798 5.67130 5.68992 5.69685 5.75371 5.80092 5.90506 5.90867 5.94434 6.01719 6.08328 6.22766 6.42275 6.45168 6.47594 6.55789 6.55957 6.62426 6.74124 6.89946 7.60803 7.89556 8.26010 8.27267 8.48405 8.87185 9.65354 10.02780 11.14403 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015386 B = 0.003156 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.429022 B = 8869.813587 C = 9648.196578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.184 3.816 3 N -0.712 5.712 4 C 0.517 3.483 5 O -0.536 6.536 6 C -0.113 4.113 7 H 0.097 0.903 8 C -0.110 4.110 9 C -0.031 4.031 10 C 0.177 3.823 11 N -0.296 5.296 12 N -0.305 5.305 13 C 0.148 3.852 14 N -0.468 5.468 15 C 0.104 3.896 16 C -0.117 4.117 17 C -0.144 4.144 18 C 0.133 3.867 19 N -0.604 5.604 20 C -0.261 4.261 21 H 0.085 0.915 22 C 0.024 3.976 23 N -0.907 5.907 24 Si 0.885 3.115 25 H -0.289 1.289 26 H -0.304 1.304 27 H -0.273 1.273 28 C 0.149 3.851 29 C -0.139 4.139 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.398 0.602 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.218 0.782 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.020 0.980 47 H 0.263 0.737 48 H 0.066 0.934 49 H 0.018 0.982 50 H 0.079 0.921 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 17.278 -0.587 19.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.098 3.902 3 N -0.363 5.363 4 C 0.302 3.698 5 O -0.414 6.414 6 C -0.135 4.135 7 H 0.115 0.885 8 C -0.149 4.149 9 C -0.071 4.071 10 C -0.091 4.091 11 N -0.136 5.136 12 N -0.145 5.145 13 C -0.139 4.139 14 N -0.159 5.159 15 C -0.018 4.018 16 C -0.155 4.155 17 C -0.184 4.184 18 C 0.008 3.992 19 N -0.328 5.328 20 C -0.389 4.389 21 H 0.103 0.897 22 C -0.175 4.175 23 N -0.550 5.550 24 Si 0.715 3.285 25 H -0.217 1.217 26 H -0.232 1.232 27 H -0.199 1.199 28 C 0.023 3.977 29 C -0.178 4.178 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.233 0.767 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.234 0.766 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.120 0.880 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.038 0.962 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.035 0.965 50 H 0.098 0.902 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.865 17.919 -0.664 20.466 hybrid contribution 1.252 -0.124 1.368 1.859 sum -8.613 17.795 0.704 19.782 Atomic orbital electron populations 1.22205 0.94924 1.02186 1.02439 1.20281 0.93007 0.79994 0.96874 1.46181 1.53094 1.12308 1.24698 1.20380 0.80390 0.86956 0.82033 1.90642 1.37965 1.76973 1.35780 1.20728 1.02887 0.93534 0.96320 0.88529 1.21336 1.01156 0.95671 0.96730 1.20564 0.99112 0.89648 0.97750 1.24849 1.02271 0.98789 0.83226 1.74238 1.14148 1.04665 1.20552 1.74531 1.20896 1.24507 0.94535 1.26341 0.98434 0.87023 1.02133 1.46363 1.40942 1.20992 1.07592 1.22557 0.96768 0.85310 0.97188 1.21476 1.01433 0.95178 0.97433 1.22408 0.98397 1.00273 0.97296 1.21228 0.91668 0.96376 0.89937 1.44352 1.48847 1.40303 0.99326 1.18914 1.09728 1.02750 1.07508 0.89702 1.25274 0.97443 0.96617 0.98176 1.69836 1.32600 1.21958 1.30616 0.86920 0.76159 0.84730 0.80654 1.21729 1.23235 1.19859 1.20882 0.90662 0.96249 0.89893 1.22342 0.99227 1.01038 0.95233 0.93239 0.92009 0.90819 0.76692 0.89433 0.90648 0.89038 0.87368 0.76594 0.88272 0.87390 0.90174 0.87964 0.90664 0.91154 0.91259 0.96188 0.92745 0.91595 0.96452 0.90205 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.40 37.16 0.31 -1.76 16 2 C 0.18 2.60 0.66 -131.78 -0.09 2.51 16 3 N -0.71 -8.60 3.81 -47.57 -0.18 -8.78 16 4 C 0.52 6.28 6.42 -10.98 -0.07 6.21 16 5 O -0.54 -8.21 11.85 5.55 0.07 -8.15 16 6 C -0.11 -0.95 1.94 -93.87 -0.18 -1.13 16 7 H 0.10 0.70 7.67 -51.93 -0.40 0.31 16 8 C -0.11 -0.80 4.89 -27.40 -0.13 -0.93 16 9 C -0.03 -0.21 6.02 -26.95 -0.16 -0.38 16 10 C 0.18 1.77 7.02 -155.74 -1.09 0.68 16 11 N -0.30 -3.96 12.23 32.84 0.40 -3.56 16 12 N -0.31 -3.99 12.25 29.60 0.36 -3.63 16 13 C 0.15 1.34 12.83 -90.35 -1.16 0.18 16 14 N -0.47 -3.89 2.72 -114.24 -0.31 -4.20 16 15 C 0.10 0.58 6.53 -3.17 -0.02 0.56 16 16 C -0.12 -0.92 4.42 -27.48 -0.12 -1.04 16 17 C -0.14 -2.54 4.66 -26.62 -0.12 -2.67 16 18 C 0.13 2.79 3.94 -3.71 -0.01 2.77 16 19 N -0.60 -13.31 2.77 -172.32 -0.48 -13.79 16 20 C -0.26 -6.97 10.03 -15.06 -0.15 -7.12 16 21 H 0.09 2.42 8.06 -52.48 -0.42 2.00 16 22 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 23 N -0.91 -27.24 13.97 55.49 0.78 -26.47 16 24 Si 0.88 21.77 24.35 -169.99 -4.14 17.63 16 25 H -0.29 -7.02 6.62 56.52 0.37 -6.65 16 26 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 27 H -0.27 -6.46 6.63 56.52 0.37 -6.08 16 28 C 0.15 2.55 6.24 -3.71 -0.02 2.53 16 29 C -0.14 -1.94 4.96 -26.61 -0.13 -2.07 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.08 6.18 -51.93 -0.32 0.75 16 33 H 0.40 4.03 6.48 -40.82 -0.26 3.77 16 34 H 0.09 0.53 6.99 -51.93 -0.36 0.17 16 35 H 0.07 0.68 7.91 -51.93 -0.41 0.27 16 36 H 0.09 0.48 7.89 -51.93 -0.41 0.07 16 37 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.22 1.02 8.06 -52.48 -0.42 0.59 16 39 H 0.10 0.45 7.87 -51.93 -0.41 0.04 16 40 H 0.11 0.36 8.13 -51.93 -0.42 -0.06 16 41 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 42 H 0.10 0.90 7.53 -51.93 -0.39 0.51 16 43 H 0.07 1.37 6.19 -51.93 -0.32 1.05 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.07 1.65 4.49 -51.93 -0.23 1.42 16 46 H 0.02 0.42 6.67 -51.93 -0.35 0.07 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 49 H 0.02 0.27 6.94 -51.93 -0.36 -0.09 16 50 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -35.40 378.76 -9.10 -44.50 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -8.05 Total: 1.81 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -3.25 Total: -1.08 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.57 Total: -60.43 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.07 Total: -8.15 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.40 -9.10 -44.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045506362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.964 kcal (2) G-P(sol) polarization free energy of solvation -35.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds